tabtk 1.0.0__tar.gz

tabtk-1.0.0/LICENSE

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+MIT License
+
+Copyright (c) 2026 Chrispin Chaguza
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

tabtk-1.0.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: tabtk
+Version: 1.0.0
+Summary: tabtk: A toolkit for sequence similarity analysis based on tabular data
+Author-email: Chrispin Chaguza <chrispin.chaguza@gmail.com>
+Maintainer-email: Chrispin Chaguza <chrispin.chaguza@gmail.com>
+License-Expression: MIT
+Project-URL: Homepage, https://github.com/ChrispinChaguza/tabtk
+Project-URL: Repository, https://github.com/ChrispinChaguza/tabtk.git
+Project-URL: Issues, https://github.com/ChrispinChaguza/tabtk/issues
+Project-URL: Documentation, https://github.com/ChrispinChaguza/tabtk
+Project-URL: Website, https://github.com/ChrispinChaguza/tabtk
+Keywords: Sequence similarity,K-mer,Cluster,Genome
+Classifier: Programming Language :: Python :: 3
+Classifier: Operating System :: OS Independent
+Classifier: Development Status :: 4 - Beta
+Classifier: Environment :: Console
+Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
+Classifier: Intended Audience :: Science/Research
+Requires-Python: >=3.8
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: build
+Dynamic: license-file
+
+# tabtk
+A toolkit for sequence similarity analysis based on tabular data
+
+# Installation
+
+```
+conda env create --name tabtk --file environment.yaml --yes
+pip install tabtk
+```
+
+Upcoming...
+```
+conda install -c bioconda tabtk --yes
+```
+
+# Citation
+```
+Chaguza et al. tabkit: A toolkit for sequence similarity analysis based on tabular data. 2026. [https://github.com/ChrispinChaguza/tabtk](https://github.com/ChrispinChaguza/tabtk)
+```

tabtk-1.0.0/README.md

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+# tabtk
+A toolkit for sequence similarity analysis based on tabular data
+
+# Installation
+
+```
+conda env create --name tabtk --file environment.yaml --yes
+pip install tabtk
+```
+
+Upcoming...
+```
+conda install -c bioconda tabtk --yes
+```
+
+# Citation
+```
+Chaguza et al. tabkit: A toolkit for sequence similarity analysis based on tabular data. 2026. [https://github.com/ChrispinChaguza/tabtk](https://github.com/ChrispinChaguza/tabtk)
+```

tabtk-1.0.0/pyproject.toml

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+[build-system]
+requires = ["setuptools"]
+
+[project]
+name = "tabtk"
+dynamic = ["version"]
+authors = [
+  { name="Chrispin Chaguza", email="chrispin.chaguza@gmail.com" },
+]
+
+maintainers = [
+  {name = "Chrispin Chaguza", email = "chrispin.chaguza@gmail.com"},
+]
+
+description = "tabtk: A toolkit for sequence similarity analysis based on tabular data"
+readme = {file = "README.md", content-type = "text/markdown"}
+license = "MIT"
+requires-python = ">=3.8"
+classifiers = [
+    "Programming Language :: Python :: 3",
+    "Operating System :: OS Independent",
+    "Development Status :: 4 - Beta",
+    "Environment :: Console",
+    "Topic :: Scientific/Engineering :: Bio-Informatics",
+    "Intended Audience :: Science/Research",
+]
+
+keywords = ["Sequence similarity","K-mer","Cluster","Genome"]
+dependencies = [
+    "build"
+]
+
+[tool.setuptools.dynamic]
+version = {attr = "tabtk.__version__"}
+
+[tool.setuptools.packages]
+find = {} 
+
+[tool.setuptools]
+py-modules = ["tabtk.tabtk"]
+
+[project.scripts]
+tabtk = "tabtk.__main__:main"
+
+[project.urls]
+Homepage = "https://github.com/ChrispinChaguza/tabtk"
+Repository = "https://github.com/ChrispinChaguza/tabtk.git"
+Issues = "https://github.com/ChrispinChaguza/tabtk/issues"
+Documentation = "https://github.com/ChrispinChaguza/tabtk"
+Website = "https://github.com/ChrispinChaguza/tabtk"
+

tabtk-1.0.0/setup.cfg

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+[egg_info]
+tag_build = 
+tag_date = 0
+

tabtk-1.0.0/tabtk/__init__.py

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+"""tabkit: A toolkit for sequence similarity analysis based on tabular data"""
+
+__version__ = "1.0.0"
+

tabtk-1.0.0/tabtk/__main__.py

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+"""tabkit: A toolkit for sequence similarity analysis based on tabular data"""
+
+import os
+import sys
+from Bio import SeqIO
+import multiprocessing
+import argparse
+import itertools
+from progress.bar import ChargingBar
+import re
+import subprocess
+from pathlib import Path
+import numpy as np
+import shutil
+import pandas as pd
+import networkx as nx
+import math
+import datetime
+from .tabtk import tabtkMain
+
+def main():
+    try:
+        tabtkMain()            
+    except KeyboardInterrupt:
+        print("Execulted halted")
+
+if __name__=="__main__":
+        main()