tablassert 7.2.0__tar.gz → 7.2.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (58) hide show
  1. {tablassert-7.2.0 → tablassert-7.2.2}/.github/workflows/autotag.yml +7 -5
  2. {tablassert-7.2.0 → tablassert-7.2.2}/.github/workflows/docker.yml +13 -5
  3. {tablassert-7.2.0 → tablassert-7.2.2}/.github/workflows/docs.yml +2 -1
  4. {tablassert-7.2.0 → tablassert-7.2.2}/.github/workflows/pipy.yml +3 -0
  5. {tablassert-7.2.0 → tablassert-7.2.2}/CHANGELOG.md +13 -0
  6. {tablassert-7.2.0 → tablassert-7.2.2}/CITATION.cff +1 -1
  7. {tablassert-7.2.0 → tablassert-7.2.2}/PKG-INFO +7 -2
  8. {tablassert-7.2.0 → tablassert-7.2.2}/docs/docker.md +2 -2
  9. {tablassert-7.2.0 → tablassert-7.2.2}/pyproject.toml +7 -2
  10. {tablassert-7.2.0 → tablassert-7.2.2}/uv.lock +1 -1
  11. {tablassert-7.2.0 → tablassert-7.2.2}/.gitignore +0 -0
  12. {tablassert-7.2.0 → tablassert-7.2.2}/.pre-commit-config.yaml +0 -0
  13. {tablassert-7.2.0 → tablassert-7.2.2}/AGENTS.md +0 -0
  14. {tablassert-7.2.0 → tablassert-7.2.2}/CONTRIBUTING.md +0 -0
  15. {tablassert-7.2.0 → tablassert-7.2.2}/Dockerfile +0 -0
  16. {tablassert-7.2.0 → tablassert-7.2.2}/LICENSE +0 -0
  17. {tablassert-7.2.0 → tablassert-7.2.2}/README.md +0 -0
  18. {tablassert-7.2.0 → tablassert-7.2.2}/docs/api/fullmap.md +0 -0
  19. {tablassert-7.2.0 → tablassert-7.2.2}/docs/api/qc.md +0 -0
  20. {tablassert-7.2.0 → tablassert-7.2.2}/docs/api/utils.md +0 -0
  21. {tablassert-7.2.0 → tablassert-7.2.2}/docs/cli.md +0 -0
  22. {tablassert-7.2.0 → tablassert-7.2.2}/docs/configuration/advanced-example.md +0 -0
  23. {tablassert-7.2.0 → tablassert-7.2.2}/docs/configuration/graph.md +0 -0
  24. {tablassert-7.2.0 → tablassert-7.2.2}/docs/configuration/table.md +0 -0
  25. {tablassert-7.2.0 → tablassert-7.2.2}/docs/datassert.md +0 -0
  26. {tablassert-7.2.0 → tablassert-7.2.2}/docs/examples/tutorial-data.csv +0 -0
  27. {tablassert-7.2.0 → tablassert-7.2.2}/docs/examples/tutorial-graph.yaml +0 -0
  28. {tablassert-7.2.0 → tablassert-7.2.2}/docs/examples/tutorial-table.yaml +0 -0
  29. {tablassert-7.2.0 → tablassert-7.2.2}/docs/examples.md +0 -0
  30. {tablassert-7.2.0 → tablassert-7.2.2}/docs/index.md +0 -0
  31. {tablassert-7.2.0 → tablassert-7.2.2}/docs/installation.md +0 -0
  32. {tablassert-7.2.0 → tablassert-7.2.2}/docs/tutorial.md +0 -0
  33. {tablassert-7.2.0 → tablassert-7.2.2}/llms.txt +0 -0
  34. {tablassert-7.2.0 → tablassert-7.2.2}/mkdocs.yml +0 -0
  35. {tablassert-7.2.0 → tablassert-7.2.2}/src/tablassert/__init__.py +0 -0
  36. {tablassert-7.2.0 → tablassert-7.2.2}/src/tablassert/cli.py +0 -0
  37. {tablassert-7.2.0 → tablassert-7.2.2}/src/tablassert/downloader.py +0 -0
  38. {tablassert-7.2.0 → tablassert-7.2.2}/src/tablassert/enums.py +0 -0
  39. {tablassert-7.2.0 → tablassert-7.2.2}/src/tablassert/fullmap.py +0 -0
  40. {tablassert-7.2.0 → tablassert-7.2.2}/src/tablassert/ingests.py +0 -0
  41. {tablassert-7.2.0 → tablassert-7.2.2}/src/tablassert/lib.py +0 -0
  42. {tablassert-7.2.0 → tablassert-7.2.2}/src/tablassert/log.py +0 -0
  43. {tablassert-7.2.0 → tablassert-7.2.2}/src/tablassert/models.py +0 -0
  44. {tablassert-7.2.0 → tablassert-7.2.2}/src/tablassert/nlp.py +0 -0
  45. {tablassert-7.2.0 → tablassert-7.2.2}/src/tablassert/qc.py +0 -0
  46. {tablassert-7.2.0 → tablassert-7.2.2}/src/tablassert/utils.py +0 -0
  47. {tablassert-7.2.0 → tablassert-7.2.2}/tests/__init__.py +0 -0
  48. {tablassert-7.2.0 → tablassert-7.2.2}/tests/conftest.py +0 -0
  49. {tablassert-7.2.0 → tablassert-7.2.2}/tests/fixtures/invalid_section_missing_source.yaml +0 -0
  50. {tablassert-7.2.0 → tablassert-7.2.2}/tests/fixtures/minimal_section.yaml +0 -0
  51. {tablassert-7.2.0 → tablassert-7.2.2}/tests/fixtures/minimal_section_with_sections.yaml +0 -0
  52. {tablassert-7.2.0 → tablassert-7.2.2}/tests/test_enums.py +0 -0
  53. {tablassert-7.2.0 → tablassert-7.2.2}/tests/test_fullmap.py +0 -0
  54. {tablassert-7.2.0 → tablassert-7.2.2}/tests/test_ingests.py +0 -0
  55. {tablassert-7.2.0 → tablassert-7.2.2}/tests/test_lib.py +0 -0
  56. {tablassert-7.2.0 → tablassert-7.2.2}/tests/test_models.py +0 -0
  57. {tablassert-7.2.0 → tablassert-7.2.2}/tests/test_nlp.py +0 -0
  58. {tablassert-7.2.0 → tablassert-7.2.2}/tests/test_utils.py +0 -0
@@ -1,5 +1,6 @@
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  name: Auto Tag Versions
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  on:
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+ workflow_dispatch:
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  workflow_run:
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  workflows:
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  - "Deploy to PyPI"
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  with:
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  fetch-depth: 0
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  - name: Autotag using pyproject.toml
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- uses: butlerlogic/action-autotag@1.0.1
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- with:
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- GITHUB_TOKEN: "${{ secrets.GITHUB_TOKEN }}"
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- tag_prefix: "v"
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- strategy: python
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+ uses: anothrNick/github-tag-action@v1
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+ env:
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+ GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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+ INITIAL_VERSION: 7.1.0
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+ TAG_PREFIX: v
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+ DEFAULT_BUMP: minor
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  name: Publish Docker Image
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  on:
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- push:
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- tags:
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- - "v*"
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+ workflow_dispatch:
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+ workflow_run:
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+ workflows:
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+ - "Auto Tag Versions"
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+ types:
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+ - completed
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+ branches:
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+ - main
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  jobs:
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  runs-on: ubuntu-latest
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  packages: write
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  steps:
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  - uses: actions/checkout@v4
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+ - name: Get version from pyproject.toml
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+ id: version
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+ run: echo "version=v$(grep -m1 'version = "' pyproject.toml | cut -d'"' -f2)" >> "$GITHUB_OUTPUT"
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  - uses: docker/setup-buildx-action@v3
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  - uses: docker/login-action@v3
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  with:
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  file: ./Dockerfile
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  push: true
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  tags: |
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- ghcr.io/${{ github.repository_owner }}/tablassert:latest
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- ghcr.io/${{ github.repository_owner }}/tablassert:${{ github.ref_name }}
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+ ghcr.io/skyeav/tablassert:latest
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+ ghcr.io/skyeav/tablassert:${{ steps.version.outputs.version }}
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  name: Deploy MkDocs
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+ workflow_dispatch:
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  push:
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  branches:
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  github_token: ${{ secrets.GITHUB_TOKEN }}
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  publish_dir: ./site
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  user_name: "github-actions[bot]"
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- user_email: "github-actions[bot]@users.noreply.github.com"
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+ user_email: "github-actions[bot]@users.noreply.github.com"
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  name: Deploy to PyPI
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  on:
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+ workflow_dispatch:
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  push:
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  branches:
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  - main
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+ paths:
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+ - pyproject.toml
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  runs-on: ubuntu-latest
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  All notable changes to this project are documented in this file.
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+ ## 7.2.2 - 2026-04-01
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+
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+ ### Bug Fixes
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+ - Fixed Docker publish workflow failing due to mixed-case repository owner in image tags. Hardcoded lowercase `ghcr.io/skyeav/tablassert` and switched trigger to run after autotag completion.
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+
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+ ### Maintenance
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+ - Updated PyPI short description.
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+
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+ ## 7.2.1 - 2026-04-01
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+
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+ ### Maintenance
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+ - Improved PyPI trove classifiers. No API changes.
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+
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  ## 7.2.0 - 2026-03-31
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  ### New Features
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  message: "If you use Tablassert, please cite it as below."
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  type: software
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  title: Tablassert
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- version: 7.2.0
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+ version: 7.2.2
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  license: Apache-2.0
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  repository-code: https://github.com/SkyeAv/Tablassert
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  abstract: Tablassert is a highly performant declarative knowledge graph backend for bioinformatics that extracts knowledge assertions from tabular data, performs entity resolution and data quality control, and exports NCATS Translator-compliant Knowledge Graph Exchange (KGX) NDJSON.
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  Metadata-Version: 2.4
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  Name: tablassert
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- Version: 7.2.0
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- Summary: Tablassert is a highly performant declarative knowledge graph backend designed to extract knowledge assertions from tabular data while exporting NCATS Translator-compliant Knowledge Graph Exchange (KGX) NDJSON.
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+ Version: 7.2.2
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+ Summary: Extract knowledge assertions from tabular data into NCATS Translator-compliant KGX NDJSON declaratively, with entity resolution and quality control built in.
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  Project-URL: Homepage, https://github.com/SkyeAv/Tablassert
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  Project-URL: Source, https://github.com/SkyeAv/Tablassert
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  Project-URL: Documentation, https://skyeav.github.io/Tablassert/
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  License-File: LICENSE
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  Keywords: bioinformatics,data quality control,declarative pipeline,entity resolution,kgx,knowledge graph,ncats translator,ner,tablassert,table mining,yaml configuration
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  Classifier: Development Status :: 5 - Production/Stable
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+ Classifier: Environment :: Console
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  Classifier: Framework :: Pydantic
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+ Classifier: Intended Audience :: Developers
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+ Classifier: Intended Audience :: Healthcare Industry
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  Classifier: Intended Audience :: Science/Research
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  Classifier: License :: OSI Approved :: Apache Software License
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  Classifier: Operating System :: OS Independent
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  Classifier: Programming Language :: Python :: 3.11
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  Classifier: Programming Language :: Python :: 3.12
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  Classifier: Programming Language :: Python :: 3.13
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+ Classifier: Programming Language :: Python :: 3.14
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+ Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
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  Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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  Requires-Python: >=3.11
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  Requires-Dist: duckdb>=1.5.0
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  ```
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- Version-pinned tags match the git tag (e.g., `ghcr.io/skyeav/tablassert:v7.2.0`).
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+ Version-pinned tags match the git tag (e.g., `ghcr.io/skyeav/tablassert:v7.2.2`).
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  ## Quick Start
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  ## CI/CD Integration
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- Images are built by `.github/workflows/docker.yml`, which triggers on tag pushes (after autotag and PyPI publish complete). Tags match the repository version tag (e.g., `v7.2.0`).
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+ Images are built by `.github/workflows/docker.yml`, which triggers on tag pushes (after autotag and PyPI publish complete). Tags match the repository version tag (e.g., `v7.2.2`).
@@ -1,7 +1,7 @@
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  [project]
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  name = "tablassert"
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- version = "7.2.0"
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- description = "Tablassert is a highly performant declarative knowledge graph backend designed to extract knowledge assertions from tabular data while exporting NCATS Translator-compliant Knowledge Graph Exchange (KGX) NDJSON."
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+ version = "7.2.2"
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+ description = "Extract knowledge assertions from tabular data into NCATS Translator-compliant KGX NDJSON declaratively, with entity resolution and quality control built in."
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  authors = [
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  { name = "Skye Lane Goetz", email = "sgoetz@isbscience.org" }
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  "License :: OSI Approved :: Apache Software License",
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  "Development Status :: 5 - Production/Stable",
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  "Intended Audience :: Science/Research",
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+ "Intended Audience :: Healthcare Industry",
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+ "Intended Audience :: Developers",
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  "Topic :: Scientific/Engineering :: Bio-Informatics",
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+ "Topic :: Scientific/Engineering :: Artificial Intelligence",
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  "Programming Language :: Python :: 3.11",
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  "Programming Language :: Python :: 3.12",
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  "Programming Language :: Python :: 3.13",
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  ]
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  dependencies = [
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  source = { editable = "." }
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