synference 0.1.2__tar.gz → 0.1.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (100) hide show
  1. {synference-0.1.2 → synference-0.1.3}/.github/workflows/docs.yml +0 -2
  2. {synference-0.1.2 → synference-0.1.3}/PKG-INFO +1 -1
  3. {synference-0.1.2 → synference-0.1.3}/pyproject.toml +1 -1
  4. {synference-0.1.2 → synference-0.1.3}/src/synference/library.py +3 -1
  5. {synference-0.1.2 → synference-0.1.3}/src/synference/sbi_runner.py +1 -1
  6. {synference-0.1.2 → synference-0.1.3}/.github/workflows/publish_pypi.yml +0 -0
  7. {synference-0.1.2 → synference-0.1.3}/.github/workflows/python-app.yml +0 -0
  8. {synference-0.1.2 → synference-0.1.3}/.gitignore +0 -0
  9. {synference-0.1.2 → synference-0.1.3}/.pre-commit-config.yaml +0 -0
  10. {synference-0.1.2 → synference-0.1.3}/AUTHORS.rst +0 -0
  11. {synference-0.1.2 → synference-0.1.3}/CODE_OF_CONDUCT.md +0 -0
  12. {synference-0.1.2 → synference-0.1.3}/LICENSE.md +0 -0
  13. {synference-0.1.2 → synference-0.1.3}/README.md +0 -0
  14. {synference-0.1.2 → synference-0.1.3}/docs/CONTRIBUTING.md +0 -0
  15. {synference-0.1.2 → synference-0.1.3}/docs/Makefile +0 -0
  16. {synference-0.1.2 → synference-0.1.3}/docs/make.bat +0 -0
  17. {synference-0.1.2 → synference-0.1.3}/docs/source/API.rst +0 -0
  18. {synference-0.1.2 → synference-0.1.3}/docs/source/FAQ/FAQ.rst +0 -0
  19. {synference-0.1.2 → synference-0.1.3}/docs/source/advanced_topics/advanced_topics.rst +0 -0
  20. {synference-0.1.2 → synference-0.1.3}/docs/source/advanced_topics/custom_loop.ipynb +0 -0
  21. {synference-0.1.2 → synference-0.1.3}/docs/source/advanced_topics/simformer.ipynb +0 -0
  22. {synference-0.1.2 → synference-0.1.3}/docs/source/conf.py +0 -0
  23. {synference-0.1.2 → synference-0.1.3}/docs/source/getting_started/contributing.rst +0 -0
  24. {synference-0.1.2 → synference-0.1.3}/docs/source/getting_started/getting_started.rst +0 -0
  25. {synference-0.1.2 → synference-0.1.3}/docs/source/getting_started/installation.rst +0 -0
  26. {synference-0.1.2 → synference-0.1.3}/docs/source/getting_started/overview.rst +0 -0
  27. {synference-0.1.2 → synference-0.1.3}/docs/source/gfx/synference_flow.png +0 -0
  28. {synference-0.1.2 → synference-0.1.3}/docs/source/gfx/synference_logo.png +0 -0
  29. {synference-0.1.2 → synference-0.1.3}/docs/source/index.rst +0 -0
  30. {synference-0.1.2 → synference-0.1.3}/docs/source/library_gen/basic_library_generation.ipynb +0 -0
  31. {synference-0.1.2 → synference-0.1.3}/docs/source/library_gen/bring_your_own_library.ipynb +0 -0
  32. {synference-0.1.2 → synference-0.1.3}/docs/source/library_gen/complex_library_generation.ipynb +0 -0
  33. {synference-0.1.2 → synference-0.1.3}/docs/source/library_gen/library_generation.rst +0 -0
  34. {synference-0.1.2 → synference-0.1.3}/docs/source/library_gen/multithreading_library_generation.ipynb +0 -0
  35. {synference-0.1.2 → synference-0.1.3}/docs/source/library_gen/synthesizer_crash_course.ipynb +0 -0
  36. {synference-0.1.2 → synference-0.1.3}/docs/source/noise_modelling/creating_noise_model.rst +0 -0
  37. {synference-0.1.2 → synference-0.1.3}/docs/source/noise_modelling/noise_models.ipynb +0 -0
  38. {synference-0.1.2 → synference-0.1.3}/docs/source/notebook_examples/cookbook.rst +0 -0
  39. {synference-0.1.2 → synference-0.1.3}/docs/source/posterior_inference/catalogue_fitting.ipynb +0 -0
  40. {synference-0.1.2 → synference-0.1.3}/docs/source/posterior_inference/intro.rst +0 -0
  41. {synference-0.1.2 → synference-0.1.3}/docs/source/posterior_inference/sed_recovery.ipynb +0 -0
  42. {synference-0.1.2 → synference-0.1.3}/docs/source/sbi/SBI.ipynb +0 -0
  43. {synference-0.1.2 → synference-0.1.3}/docs/source/sbi/introduction_to_sbi.rst +0 -0
  44. {synference-0.1.2 → synference-0.1.3}/docs/source/sbi_train/basic_sbi_model.ipynb +0 -0
  45. {synference-0.1.2 → synference-0.1.3}/docs/source/sbi_train/complex_sbi_model.ipynb +0 -0
  46. {synference-0.1.2 → synference-0.1.3}/docs/source/sbi_train/feature_array.ipynb +0 -0
  47. {synference-0.1.2 → synference-0.1.3}/docs/source/sbi_train/intro_sbi.rst +0 -0
  48. {synference-0.1.2 → synference-0.1.3}/docs/source/sbi_train/model_optimization.ipynb +0 -0
  49. {synference-0.1.2 → synference-0.1.3}/docs/source/sbi_train/model_validation.ipynb +0 -0
  50. {synference-0.1.2 → synference-0.1.3}/docs/source/sbi_train/online_training.ipynb +0 -0
  51. {synference-0.1.2 → synference-0.1.3}/docs/source/sbi_train/validation_sampling.ipynb +0 -0
  52. {synference-0.1.2 → synference-0.1.3}/docs/source/templates/custom-class-template.rst +0 -0
  53. {synference-0.1.2 → synference-0.1.3}/docs/source/templates/custom-module-template.rst +0 -0
  54. {synference-0.1.2 → synference-0.1.3}/examples/README.rst +0 -0
  55. {synference-0.1.2 → synference-0.1.3}/examples/library_generation/scripts/batch_library_generation.py +0 -0
  56. {synference-0.1.2 → synference-0.1.3}/examples/library_generation/scripts/final_library_generation.py +0 -0
  57. {synference-0.1.2 → synference-0.1.3}/examples/library_generation/scripts/final_library_generation_multinode.py +0 -0
  58. {synference-0.1.2 → synference-0.1.3}/examples/library_generation/scripts/fixed_params.py +0 -0
  59. {synference-0.1.2 → synference-0.1.3}/examples/library_generation/scripts/generate_agn_library.py +0 -0
  60. {synference-0.1.2 → synference-0.1.3}/examples/library_generation/scripts/generate_library_basic.py +0 -0
  61. {synference-0.1.2 → synference-0.1.3}/examples/library_generation/scripts/generate_library_full.py +0 -0
  62. {synference-0.1.2 → synference-0.1.3}/examples/library_generation/scripts/generate_pop3_library.py +0 -0
  63. {synference-0.1.2 → synference-0.1.3}/examples/library_generation/scripts/generate_spectral_library.py +0 -0
  64. {synference-0.1.2 → synference-0.1.3}/examples/library_generation/scripts/grab_filters_for_node.py +0 -0
  65. {synference-0.1.2 → synference-0.1.3}/examples/library_generation/scripts/make_library.slurm +0 -0
  66. {synference-0.1.2 → synference-0.1.3}/examples/library_generation/scripts/min_example.py +0 -0
  67. {synference-0.1.2 → synference-0.1.3}/examples/online/notebooks/online_learning.ipynb +0 -0
  68. {synference-0.1.2 → synference-0.1.3}/examples/online/scripts/online_learning.py +0 -0
  69. {synference-0.1.2 → synference-0.1.3}/examples/paper/bagpipes_comparison.ipynb +0 -0
  70. {synference-0.1.2 → synference-0.1.3}/examples/paper/missing_data.ipynb +0 -0
  71. {synference-0.1.2 → synference-0.1.3}/examples/paper/model_testing.ipynb +0 -0
  72. {synference-0.1.2 → synference-0.1.3}/examples/paper/obs.ipynb +0 -0
  73. {synference-0.1.2 → synference-0.1.3}/examples/paper/redshift_inference.ipynb +0 -0
  74. {synference-0.1.2 → synference-0.1.3}/examples/sbi/configs/best_params.yaml +0 -0
  75. {synference-0.1.2 → synference-0.1.3}/examples/sbi/configs/best_params_2101.yaml +0 -0
  76. {synference-0.1.2 → synference-0.1.3}/examples/sbi/configs/custom_loop.yaml +0 -0
  77. {synference-0.1.2 → synference-0.1.3}/examples/sbi/configs/custom_loop_mdn.yaml +0 -0
  78. {synference-0.1.2 → synference-0.1.3}/examples/sbi/configs/custom_loop_test.yaml +0 -0
  79. {synference-0.1.2 → synference-0.1.3}/examples/sbi/notebooks/optimize_sbi.ipynb +0 -0
  80. {synference-0.1.2 → synference-0.1.3}/examples/sbi/notebooks/train_spectral_model.ipynb +0 -0
  81. {synference-0.1.2 → synference-0.1.3}/examples/sbi/scripts/basic_model.py +0 -0
  82. {synference-0.1.2 → synference-0.1.3}/examples/sbi/scripts/train_model.py +0 -0
  83. {synference-0.1.2 → synference-0.1.3}/examples/sbi/scripts/train_spectral_model.py +0 -0
  84. {synference-0.1.2 → synference-0.1.3}/examples/sbi/scripts/train_sphinx_model.py +0 -0
  85. {synference-0.1.2 → synference-0.1.3}/examples/sbi/scripts/wait_for_gpu.py +0 -0
  86. {synference-0.1.2 → synference-0.1.3}/examples/sbi/slurm/optimize_model.slurm +0 -0
  87. {synference-0.1.2 → synference-0.1.3}/examples/sbi/slurm/train_final_model.slurm +0 -0
  88. {synference-0.1.2 → synference-0.1.3}/examples/simformer/scripts/fit_simformer_model.py +0 -0
  89. {synference-0.1.2 → synference-0.1.3}/examples/simformer/scripts/model_comparison.py +0 -0
  90. {synference-0.1.2 → synference-0.1.3}/src/synference/__init__.py +0 -0
  91. {synference-0.1.2 → synference-0.1.3}/src/synference/custom_runner.py +0 -0
  92. {synference-0.1.2 → synference-0.1.3}/src/synference/noise_models.py +0 -0
  93. {synference-0.1.2 → synference-0.1.3}/src/synference/py.typed +0 -0
  94. {synference-0.1.2 → synference-0.1.3}/src/synference/simformer.py +0 -0
  95. {synference-0.1.2 → synference-0.1.3}/src/synference/utils.py +0 -0
  96. {synference-0.1.2 → synference-0.1.3}/tests/conftest.py +0 -0
  97. {synference-0.1.2 → synference-0.1.3}/tests/test_library.py +0 -0
  98. {synference-0.1.2 → synference-0.1.3}/tests/test_sbi.py +0 -0
  99. {synference-0.1.2 → synference-0.1.3}/tests/test_simulator.py +0 -0
  100. {synference-0.1.2 → synference-0.1.3}/tests/test_uncertainty_models.py +0 -0
@@ -7,8 +7,6 @@ name: Docs
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  on:
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  # Runs on releases to enure docs are in step with PyPI deployment
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  push:
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- tags:
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- - "v*.*.*" # Matches version tags like v1.0.0, v2.1.3, etc.
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  branches:
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  - main # Ensure this matches your main branch name
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@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: synference
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- Version: 0.1.2
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+ Version: 0.1.3
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  Summary: Simulation-based inference for SED-fitting of galaxy photometry and spectroscopy
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  Project-URL: Homepage, https://github.com/synthesizer-project/synference
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  Project-URL: Bug Reports, https://github.com/synthesizer-project/synference/issues
@@ -1,6 +1,6 @@
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  [project]
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  name = "synference"
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- version = "0.1.2"
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+ version = "0.1.3"
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  description = "Simulation-based inference for SED-fitting of galaxy photometry and spectroscopy"
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  license = {file = "LICENSE.md"}
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  readme = "README.md"
@@ -5268,7 +5268,7 @@ class GalaxySimulator(object):
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  f"Library path {library_path} does not exist. Cannot create GalaxySimulator."
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  )
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- with h5py.File(library_path, "r") as f:
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+ with h5py.File(library_path, "r+") as f:
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  if "Model" not in f:
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  raise ValueError(
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  f"""Library file {library_path} does not contain 'Model' group.
@@ -5316,6 +5316,8 @@ class GalaxySimulator(object):
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  grid = Grid(grid_name, grid_dir) # new_lam=lam)
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  # Step 2. Make instrument
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+ if model_group["Instrument"].attrs.get("instrument_type", None) is None:
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+ model_group["Instrument"].attrs["instrument_type"] = "photometric"
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  instrument = Instrument._from_hdf5(model_group["Instrument"])
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  # Step 3 - recreate cosmology
@@ -6437,7 +6437,7 @@ class SBI_Fitter:
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  sampling_kwargs = {}
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  # check if sampler.sample accepts arbitrary keyword arguments,
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  # if so pass them the timeout_seconds_per_test
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- _, _, varkw, _ = inspect.getargspec(sampler.sample)
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+ _, _, varkw, _ = inspect.getfullargspec(sampler.sample)
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  if "kwargs" in varkw:
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  if timeout_seconds_per_test is not None and sample_method == "direct":
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  print(f"{timeout_seconds_per_test}s per sample.")
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