syncmoss 0.2.2__tar.gz → 0.3.0__tar.gz

syncmoss-0.3.0/.github/workflows/Tests.yml

@@ -0,0 +1,50 @@
+name: Tests
+
+# Runs on EVERY push, on any branch, and on every pull request -- so a plain
+# `git push` to main and opening a PR both get checked. The release pipeline
+# (release.yml) only fires when __VERSION__ in syncmoss/main.py changes, which is
+# why the suite needs its own trigger here.
+#
+# Push/PR runs everything EXCEPT the `slow` marker (the real calibration fits,
+# the real simultaneous-fit tests, and the full GUI open-and-fit smoke) -- those
+# are re-run in full by release.yml against the built wheel. To run absolutely
+# everything from any branch, use "Run workflow" -> scope: full.
+on:
+  push:
+    # '**' = every branch, but NOT tags -- otherwise the release tag that
+    # _TagRelease.yml pushes would re-run the whole suite for nothing.
+    branches: ['**']
+  pull_request:
+  workflow_dispatch:
+    inputs:
+      scope:
+        description: 'Which tests to run'
+        type: choice
+        options:
+          - full   # every test, nothing skipped
+          - fast   # skip the `slow` marker
+        default: full
+
+# A push immediately followed by opening a PR fires two events that name the same
+# head branch; collapse them into one run instead of paying for both.
+concurrency:
+  group: tests-${{ github.event.pull_request.head.ref || github.ref_name }}
+  cancel-in-progress: true
+
+# Exactly one lane runs; the other is skipped.
+jobs:
+  # Every push and pull request, and "Run workflow" -> fast.
+  fast:
+    if: github.event_name != 'workflow_dispatch' || inputs.scope == 'fast'
+    uses: ./.github/workflows/_Tests.yml
+    with:
+      install: source
+      selection: 'not slow'
+
+  # "Run workflow" -> full: the whole suite, on demand, from any branch.
+  full:
+    if: github.event_name == 'workflow_dispatch' && inputs.scope == 'full'
+    uses: ./.github/workflows/_Tests.yml
+    with:
+      install: source
+      selection: ''

syncmoss-0.3.0/.github/workflows/_Tests.yml

@@ -0,0 +1,106 @@
+name: _Tests (Linux / Windows / macOS)
+
+# The single definition of "how the test-suite is run". Two callers use it:
+#
+#   * Tests.yml   -- every push / pull request. Tests the SOURCE checkout and
+#                    skips the `slow` marker, so a branch push gets an answer
+#                    quickly.
+#   * release.yml -- before the (expensive) PyInstaller builds. Tests the
+#                    INSTALLED WHEEL, with no marker filter, so nothing is
+#                    skipped in a release.
+#
+# Both always run on all three OSes; the two lanes differ only in WHAT is
+# installed and WHICH tests are selected.
+on:
+  workflow_call:
+    inputs:
+      install:
+        description: "'wheel' = exercise the built wheel artifact; 'source' = exercise the checkout"
+        type: string
+        default: 'wheel'
+      selection:
+        description: "pytest -m marker expression; empty = the whole suite"
+        type: string
+        default: ''
+  workflow_dispatch:
+    inputs:
+      install:
+        description: 'What to test (wheel needs a `wheels` artifact in this run, so pick source)'
+        type: choice
+        options:
+          - source
+          - wheel
+        default: source
+      selection:
+        description: 'pytest -m expression, e.g. "not slow". Empty = every test.'
+        type: string
+        default: ''
+
+jobs:
+  tests:
+    name: tests (${{ matrix.os }})
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, windows-latest, macos-latest]
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/checkout@v6
+
+      - uses: actions/setup-python@v6
+        with:
+          python-version: "3.13"
+          cache: "pip"
+
+      - name: Install Qt/OpenGL runtime libraries (Linux head-less PySide6)
+        if: runner.os == 'Linux'
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y libegl1 libgl1 libxkbcommon0 libdbus-1-3 libglib2.0-0
+
+      - name: Download wheel artifact
+        if: inputs.install == 'wheel'
+        uses: actions/download-artifact@v6
+        with:
+          name: wheels
+          path: wheels
+
+      # These steps run on all three OSes, so they are written in the one shell
+      # present on all three: bash. (Pre-existing choice -- it is also why
+      # `mktemp -d` is used below rather than a Windows temp path.)
+      - name: Install syncmoss from the built wheel (as a library) + pytest
+        if: inputs.install == 'wheel'
+        shell: bash
+        run: |
+          python -m pip install --upgrade pip
+          pip install wheels/*.whl
+          pip install pytest
+
+      - name: Install runtime dependencies + pytest (source checkout)
+        if: inputs.install == 'source'
+        shell: bash
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r requirements.txt
+          pip install pytest
+
+      - name: Run the test-suite
+        shell: bash
+        env:
+          QT_QPA_PLATFORM: offscreen
+          INSTALL: ${{ inputs.install }}
+          SELECTION: ${{ inputs.selection }}
+        run: |
+          args=(-q)
+          if [ -n "$SELECTION" ]; then args+=(-m "$SELECTION"); fi
+
+          # wheel mode: run from a clean directory so the source tree is NOT on
+          # sys.path and the installed wheel is exercised (syncmoss is a namespace
+          # package). mktemp -d works in Git-bash on Windows too, avoiding
+          # backslash-path pitfalls.
+          # source mode: stay in the workspace, so `syncmoss/` is imported from
+          # the checkout -- that is the code the push is about.
+          if [ "$INSTALL" = "wheel" ]; then cd "$(mktemp -d)"; fi
+
+          python -c "import syncmoss.syncmoss_main as m; print('syncmoss from:', m.__file__)"
+          python -m pytest "$GITHUB_WORKSPACE/tests" "${args[@]}"

{syncmoss-0.2.2 → syncmoss-0.3.0}/.github/workflows/_WindowsExe.yml

@@ -24,7 +24,11 @@ jobs:
         run: |
           python -m pip install --upgrade pip setuptools wheel
           pip install -r requirements.txt
-          pip install wheels/*.whl
+          # PowerShell does NOT expand a glob when calling a native command, so
+          # `pip install wheels/*.whl` handed pip the literal string and failed --
+          # silently, because the step's exit code came from the last line. Resolve
+          # the path in PowerShell instead.
+          pip install (Get-ChildItem wheels/*.whl).FullName
           pip install pyinstaller
 
       - name: Build with PyInstaller

{syncmoss-0.2.2 → syncmoss-0.3.0}/.gitignore

@@ -49,6 +49,7 @@ coverage.xml
 *.py,cover
 .hypothesis/
 .pytest_cache/
+.pytest_tmp/
 
 # Translations
 *.mo
@@ -109,6 +110,9 @@ ENV/
 env.bak/
 venv.bak/
 
+# AI generated docs
+docs/
+
 # Spyder project settings
 .spyderproject
 .spyproject
@@ -129,7 +133,7 @@ dmypy.json
 
 # Project specific
 .vscode/
-for tests/
+for_tests/
 source_code/
 bundle/build/
 bundle/Windows/
@@ -144,8 +148,17 @@ syncmoss/*.svg
 # (the active implementation is now the optimized minimi_lib.py).
 syncmoss/minimi_lib_old.py
 
+# Pre-merge copy of the models module, kept locally for reference only
+# (before the thin + polarized "thick" models were merged into models.py).
+syncmoss/models_full_old.py
+
 # minimi_lib optimization: local-only test tooling and notes (depend on the
 # git-ignored minimi_lib_old.py; kept out of the tracked repo).
 verify_minimi.py
 bench_coldstart.py
 minimi_optimization_notes.txt
+
+# SCDW grid-vs-direct / physics-invariant checks: kept local-only. The tracked
+# suite still covers the model end-to-end via the SCDW golden case, plus its
+# param-count and locked-angle checks (test_model_io / test_thick_gui).
+tests/test_sdw_grid.py

{syncmoss-0.2.2/syncmoss.egg-info → syncmoss-0.3.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: syncmoss
-Version: 0.2.2
+Version: 0.3.0
 Summary: SYNCmoss — Mössbauer spectroscopy analysis application
 Author: Sergey Yaroslavtsev
 License: MIT
@@ -75,20 +75,34 @@ syncmoss
 * Can extract instrumental function from spectrum of standard absorber
 * Sequence (batch) fitting
 * Simultaneous fitting
-* Full Hamiltonian model for single crystal case
+* Full Hamiltonian model for the single crystal, mosaic textured and powder cases (one model, three order parameters)
 * 2-state relaxation model
 * Many-state superparamagnetic relaxation model
 * Anharmonic spin modulation (ASM) model
 * MDGD model (instead of xVBF https://doi.org/10.1016/j.nimb.2025.165669)
+* SCDW: spin- and charge-density-wave model
 * Multi-dimensional distributions with correlations (not reconstruction but functional)
+* Distribution reconstruction with regularization (on testing)
 * Expressions (which could be linked to parameters)
 * Online (along with experiment) fitting
 * Parallel calculations of full-transmission integral
-
-New features:
-* Library with import/export - create your own and share it with others
+* Library with import/export - create your own and share it with others, ~50 reference phases included
 * Interactive spectrum image
 
+
+*Thick samples and proper handling of polarization*
+* Every model builds a 2x2 cross-section matrix,
+  so absorber thickness, polarization and multi-line interference are treated
+  together
+* Works in both source modes: polarized SMS
+  (with a settable linear polarization degree)
+  and unpolarized CMS
+* `Layer` marker: stack layers of different orientation or composition, each with
+  its own transmission matrix
+* Magnetic texture: uniaxial order `A` on every anisotropic component plus the
+  magnetic polar order `Am` on the Faraday-active ones - a random powder,
+  a textured foil and a single crystal are the same model at different values
+
 ## Author
 
 Yaroslavtsev Sergey (ESRF | ADA and ID14)

{syncmoss-0.2.2 → syncmoss-0.3.0}/README.md

@@ -42,20 +42,34 @@ syncmoss
 * Can extract instrumental function from spectrum of standard absorber
 * Sequence (batch) fitting
 * Simultaneous fitting
-* Full Hamiltonian model for single crystal case
+* Full Hamiltonian model for the single crystal, mosaic textured and powder cases (one model, three order parameters)
 * 2-state relaxation model
 * Many-state superparamagnetic relaxation model
 * Anharmonic spin modulation (ASM) model
 * MDGD model (instead of xVBF https://doi.org/10.1016/j.nimb.2025.165669)
+* SCDW: spin- and charge-density-wave model
 * Multi-dimensional distributions with correlations (not reconstruction but functional)
+* Distribution reconstruction with regularization (on testing)
 * Expressions (which could be linked to parameters)
 * Online (along with experiment) fitting
 * Parallel calculations of full-transmission integral
-
-New features:
-* Library with import/export - create your own and share it with others
+* Library with import/export - create your own and share it with others, ~50 reference phases included
 * Interactive spectrum image
 
+
+*Thick samples and proper handling of polarization*
+* Every model builds a 2x2 cross-section matrix,
+  so absorber thickness, polarization and multi-line interference are treated
+  together
+* Works in both source modes: polarized SMS
+  (with a settable linear polarization degree)
+  and unpolarized CMS
+* `Layer` marker: stack layers of different orientation or composition, each with
+  its own transmission matrix
+* Magnetic texture: uniaxial order `A` on every anisotropic component plus the
+  magnetic polar order `Am` on the Faraday-active ones - a random powder,
+  a textured foil and a single crystal are the same model at different values
+
 ## Author
 
 Yaroslavtsev Sergey (ESRF | ADA and ID14)

{syncmoss-0.2.2 → syncmoss-0.3.0}/bundle/bundle.py

@@ -114,6 +114,8 @@ def verify():
         "parameters/GCMS.txt",
         "parameters/INSexp.txt",
         "parameters/INSint.txt",
+        "parameters/models_description.md",
+        "parameters/help.md",
         "theme_dark.json",
         "theme_light.json",
         "parameters/Calibration.dat",

{syncmoss-0.2.2 → syncmoss-0.3.0}/bundle/macos_bundle.py

@@ -112,6 +112,8 @@ def verify(app_dir: str):
         "Contents/MacOS/icons/CheckBox.png",
         "Contents/MacOS/parameters/Be.txt",
         "Contents/MacOS/parameters/KB.txt",
+        "Contents/MacOS/parameters/models_description.md",
+        "Contents/MacOS/parameters/help.md",
         "Contents/MacOS/parameters/Calibration.dat",
         "Contents/MacOS/theme_dark.json",
         "Contents/MacOS/theme_light.json",