symbolic-data 0.1.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (33) hide show
  1. symbolic_data-0.1.0/LICENSE +21 -0
  2. symbolic_data-0.1.0/PKG-INFO +74 -0
  3. symbolic_data-0.1.0/README.md +49 -0
  4. symbolic_data-0.1.0/pyproject.toml +38 -0
  5. symbolic_data-0.1.0/setup.cfg +4 -0
  6. symbolic_data-0.1.0/src/symbolic_data/__init__.py +19 -0
  7. symbolic_data-0.1.0/src/symbolic_data/benchmarks/__init__.py +4 -0
  8. symbolic_data-0.1.0/src/symbolic_data/benchmarks/fastsrb.py +524 -0
  9. symbolic_data-0.1.0/src/symbolic_data/compilation.py +27 -0
  10. symbolic_data-0.1.0/src/symbolic_data/config_io.py +155 -0
  11. symbolic_data-0.1.0/src/symbolic_data/datasets.py +77 -0
  12. symbolic_data-0.1.0/src/symbolic_data/distributions.py +174 -0
  13. symbolic_data-0.1.0/src/symbolic_data/holdout.py +106 -0
  14. symbolic_data-0.1.0/src/symbolic_data/paths.py +68 -0
  15. symbolic_data-0.1.0/src/symbolic_data/prior_factory.py +31 -0
  16. symbolic_data-0.1.0/src/symbolic_data/registry.py +133 -0
  17. symbolic_data-0.1.0/src/symbolic_data/samples.py +255 -0
  18. symbolic_data-0.1.0/src/symbolic_data/skeleton_pool.py +817 -0
  19. symbolic_data-0.1.0/src/symbolic_data/skeleton_sampling.py +129 -0
  20. symbolic_data-0.1.0/src/symbolic_data/structure.py +24 -0
  21. symbolic_data-0.1.0/src/symbolic_data/support_sampling.py +457 -0
  22. symbolic_data-0.1.0/src/symbolic_data/sympy_timeout.py +89 -0
  23. symbolic_data-0.1.0/src/symbolic_data/tensor_ops.py +55 -0
  24. symbolic_data-0.1.0/src/symbolic_data/token_ops.py +72 -0
  25. symbolic_data-0.1.0/src/symbolic_data.egg-info/PKG-INFO +74 -0
  26. symbolic_data-0.1.0/src/symbolic_data.egg-info/SOURCES.txt +31 -0
  27. symbolic_data-0.1.0/src/symbolic_data.egg-info/dependency_links.txt +1 -0
  28. symbolic_data-0.1.0/src/symbolic_data.egg-info/requires.txt +13 -0
  29. symbolic_data-0.1.0/src/symbolic_data.egg-info/top_level.txt +1 -0
  30. symbolic_data-0.1.0/tests/test_datasets.py +49 -0
  31. symbolic_data-0.1.0/tests/test_holdout_manager.py +95 -0
  32. symbolic_data-0.1.0/tests/test_registry.py +120 -0
  33. symbolic_data-0.1.0/tests/test_samples.py +137 -0
@@ -0,0 +1,21 @@
1
+ MIT License
2
+
3
+ Copyright (c) 2024 Paul Saegert
4
+
5
+ Permission is hereby granted, free of charge, to any person obtaining a copy
6
+ of this software and associated documentation files (the "Software"), to deal
7
+ in the Software without restriction, including without limitation the rights
8
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9
+ copies of the Software, and to permit persons to whom the Software is
10
+ furnished to do so, subject to the following conditions:
11
+
12
+ The above copyright notice and this permission notice shall be included in all
13
+ copies or substantial portions of the Software.
14
+
15
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
21
+ SOFTWARE.
@@ -0,0 +1,74 @@
1
+ Metadata-Version: 2.4
2
+ Name: symbolic-data
3
+ Version: 0.1.0
4
+ Summary: Model-agnostic symbolic-regression data layer: skeleton/expression sampling, priors, holdout, datasets.
5
+ Author: Paul Saegert
6
+ License-Expression: MIT
7
+ Project-URL: Homepage, https://github.com/psaegert/symbolic-data
8
+ Project-URL: Repository, https://github.com/psaegert/symbolic-data
9
+ Keywords: symbolic-regression,dataset,sampling,holdout,expression
10
+ Requires-Python: >=3.11
11
+ Description-Content-Type: text/markdown
12
+ License-File: LICENSE
13
+ Requires-Dist: numpy
14
+ Requires-Dist: scikit-learn
15
+ Requires-Dist: simplipy>=0.3.1
16
+ Requires-Dist: pyyaml
17
+ Requires-Dist: tqdm
18
+ Requires-Dist: huggingface_hub
19
+ Provides-Extra: sympy
20
+ Requires-Dist: sympy; extra == "sympy"
21
+ Provides-Extra: dev
22
+ Requires-Dist: pytest; extra == "dev"
23
+ Requires-Dist: pytest-cov; extra == "dev"
24
+ Dynamic: license-file
25
+
26
+ # symbolic_data
27
+
28
+ The model-agnostic symbolic-regression **data layer**, carved out of
29
+ [flash-ansr](https://github.com/psaegert/flash-ansr): skeleton/expression sampling,
30
+ priors, `(X, y)` support sampling, holdout management, and dataset construction.
31
+
32
+ Both symbolic-regression methods (for training holdout) and the
33
+ [srbf](https://github.com/psaegert/srbf) eval framework depend on it, so training,
34
+ holdout, and evaluation draw from one source of truth. Depends only on
35
+ [`simplipy`](https://github.com/psaegert/simplipy) + numpy/sklearn.
36
+
37
+ ## Install
38
+
39
+ ```bash
40
+ pip install symbolic-data
41
+ ```
42
+
43
+ ## Quick start
44
+
45
+ ```python
46
+ import symbolic_data
47
+
48
+ # 1. Sample (X, y) problems from a skeleton pool (the model-agnostic seam)
49
+ pool = symbolic_data.SkeletonPool.from_config("skeleton_pool.yaml")
50
+ pool.create(100)
51
+ for sample in symbolic_data.iter_samples(pool, n_support=32, noise_level=0.01, seed=0):
52
+ sample.x_support, sample.y_support, sample.expression # ready to fit / tokenize
53
+
54
+ # 2. Load a benchmark (spec fetched + cached from the psaegert/ansr-data HF dataset)
55
+ fastsrb = symbolic_data.load_benchmark("fastsrb")
56
+ dataset = fastsrb.sample("II.38.3", n_points=100)
57
+ ```
58
+
59
+ ## Extensibility
60
+
61
+ Distributions and benchmarks are pluggable via registries: in-process with
62
+ `@symbolic_data.DISTRIBUTIONS.register("name")` / `@symbolic_data.BENCHMARKS.register("name")`, or
63
+ across packages via `importlib.metadata` entry points (groups `symbolic_data.distributions`,
64
+ `symbolic_data.benchmarks`). A registered name drops into the same config slot as a builtin.
65
+
66
+ ## Versioning / reproducibility
67
+
68
+ v1 guarantees **leak-safety** (a seeded, shipped holdout grid + a robust symbolic/numeric
69
+ matcher), not cross-consumer byte-identical regeneration (the rng-Generator threading is a
70
+ separate, later phase). Benchmark specs are HF-versioned and stamped on `.provenance`.
71
+
72
+ > Status: v0.1.0. Registry, `iter_samples` seam, and `load_benchmark` (FastSRB) are in.
73
+ > Deferred: the MIA matched-control audit, curated benchmark loaders (Feynman/Nguyen), the
74
+ > canonical-v1 holdout grid mint, and cross-consumer byte-identical sampling.
@@ -0,0 +1,49 @@
1
+ # symbolic_data
2
+
3
+ The model-agnostic symbolic-regression **data layer**, carved out of
4
+ [flash-ansr](https://github.com/psaegert/flash-ansr): skeleton/expression sampling,
5
+ priors, `(X, y)` support sampling, holdout management, and dataset construction.
6
+
7
+ Both symbolic-regression methods (for training holdout) and the
8
+ [srbf](https://github.com/psaegert/srbf) eval framework depend on it, so training,
9
+ holdout, and evaluation draw from one source of truth. Depends only on
10
+ [`simplipy`](https://github.com/psaegert/simplipy) + numpy/sklearn.
11
+
12
+ ## Install
13
+
14
+ ```bash
15
+ pip install symbolic-data
16
+ ```
17
+
18
+ ## Quick start
19
+
20
+ ```python
21
+ import symbolic_data
22
+
23
+ # 1. Sample (X, y) problems from a skeleton pool (the model-agnostic seam)
24
+ pool = symbolic_data.SkeletonPool.from_config("skeleton_pool.yaml")
25
+ pool.create(100)
26
+ for sample in symbolic_data.iter_samples(pool, n_support=32, noise_level=0.01, seed=0):
27
+ sample.x_support, sample.y_support, sample.expression # ready to fit / tokenize
28
+
29
+ # 2. Load a benchmark (spec fetched + cached from the psaegert/ansr-data HF dataset)
30
+ fastsrb = symbolic_data.load_benchmark("fastsrb")
31
+ dataset = fastsrb.sample("II.38.3", n_points=100)
32
+ ```
33
+
34
+ ## Extensibility
35
+
36
+ Distributions and benchmarks are pluggable via registries: in-process with
37
+ `@symbolic_data.DISTRIBUTIONS.register("name")` / `@symbolic_data.BENCHMARKS.register("name")`, or
38
+ across packages via `importlib.metadata` entry points (groups `symbolic_data.distributions`,
39
+ `symbolic_data.benchmarks`). A registered name drops into the same config slot as a builtin.
40
+
41
+ ## Versioning / reproducibility
42
+
43
+ v1 guarantees **leak-safety** (a seeded, shipped holdout grid + a robust symbolic/numeric
44
+ matcher), not cross-consumer byte-identical regeneration (the rng-Generator threading is a
45
+ separate, later phase). Benchmark specs are HF-versioned and stamped on `.provenance`.
46
+
47
+ > Status: v0.1.0. Registry, `iter_samples` seam, and `load_benchmark` (FastSRB) are in.
48
+ > Deferred: the MIA matched-control audit, curated benchmark loaders (Feynman/Nguyen), the
49
+ > canonical-v1 holdout grid mint, and cross-consumer byte-identical sampling.
@@ -0,0 +1,38 @@
1
+ [build-system]
2
+ requires = ["setuptools>=68"]
3
+ build-backend = "setuptools.build_meta"
4
+
5
+ [project]
6
+ name = "symbolic-data"
7
+ version = "0.1.0"
8
+ description = "Model-agnostic symbolic-regression data layer: skeleton/expression sampling, priors, holdout, datasets."
9
+ readme = "README.md"
10
+ requires-python = ">=3.11"
11
+ license = "MIT"
12
+ authors = [{ name = "Paul Saegert" }]
13
+ keywords = ["symbolic-regression", "dataset", "sampling", "holdout", "expression"]
14
+ dependencies = [
15
+ "numpy",
16
+ "scikit-learn",
17
+ "simplipy>=0.3.1",
18
+ "pyyaml",
19
+ "tqdm",
20
+ "huggingface_hub",
21
+ ]
22
+
23
+ [project.optional-dependencies]
24
+ sympy = ["sympy"]
25
+ dev = ["pytest", "pytest-cov"]
26
+
27
+ [project.urls]
28
+ Homepage = "https://github.com/psaegert/symbolic-data"
29
+ Repository = "https://github.com/psaegert/symbolic-data"
30
+
31
+ [tool.setuptools.packages.find]
32
+ where = ["src"]
33
+
34
+ [tool.flake8]
35
+ max-line-length = 250
36
+ extend-ignore = ["E203", "W503"]
37
+ per-file-ignores = ["__init__.py:F401"]
38
+ exclude = [".git", "__pycache__", "build", "dist", ".venv", "venv"]
@@ -0,0 +1,4 @@
1
+ [egg_info]
2
+ tag_build =
3
+ tag_date = 0
4
+
@@ -0,0 +1,19 @@
1
+ """symbolic_data -- the model-agnostic symbolic-regression data layer.
2
+
3
+ Skeleton/expression sampling, priors, (X, y) support sampling, holdout management, and
4
+ dataset construction -- carved out of flash-ansr so symbolic-regression methods and the
5
+ srbf eval framework share one data substrate. Depends only on simplipy + numpy/sklearn.
6
+ """
7
+ from symbolic_data.skeleton_pool import SkeletonPool, NoValidSampleFoundError
8
+ from symbolic_data.holdout import HoldoutManager
9
+ from symbolic_data.skeleton_sampling import SkeletonSampler
10
+ from symbolic_data.support_sampling import SupportSampler, SupportSamplingError
11
+ from symbolic_data.distributions import get_distribution, DISTRIBUTIONS, BASE_DISTRIBUTIONS
12
+ from symbolic_data.prior_factory import build_prior_callable
13
+ from symbolic_data.registry import Registry
14
+ from symbolic_data.samples import Sample, sample_from_skeleton, iter_samples
15
+ from symbolic_data.tensor_ops import mask_unused_variable_columns
16
+ from symbolic_data.datasets import load_benchmark, BENCHMARKS
17
+ from symbolic_data.benchmarks import FastSRBBenchmark
18
+ from symbolic_data.paths import get_path, get_root, substitute_root_path
19
+ from symbolic_data.config_io import load_config, save_config
@@ -0,0 +1,4 @@
1
+ """Benchmark loaders (model-agnostic equation specs + (X, y) sampling)."""
2
+ from symbolic_data.benchmarks.fastsrb import FastSRBBenchmark
3
+
4
+ __all__ = ["FastSRBBenchmark"]