sxs 2025.0.13__tar.gz → 2025.0.14__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (136) hide show
  1. {sxs-2025.0.13 → sxs-2025.0.14}/CITATION.cff +2 -2
  2. {sxs-2025.0.13 → sxs-2025.0.14}/PKG-INFO +34 -7
  3. {sxs-2025.0.13 → sxs-2025.0.14}/README.md +33 -6
  4. sxs-2025.0.14/docs/api/cite.md +10 -0
  5. {sxs-2025.0.13 → sxs-2025.0.14}/docs/api/simulation.md +4 -1
  6. {sxs-2025.0.13 → sxs-2025.0.14}/mkdocs.yml +1 -0
  7. sxs-2025.0.14/sxs/__version__.py +1 -0
  8. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/citation.py +1 -1
  9. sxs-2025.0.13/sxs/__version__.py +0 -1
  10. {sxs-2025.0.13 → sxs-2025.0.14}/.codecov.yml +0 -0
  11. {sxs-2025.0.13 → sxs-2025.0.14}/.github/ISSUE_TEMPLATE/catalog-data-issue-template.md +0 -0
  12. {sxs-2025.0.13 → sxs-2025.0.14}/.github/dependabot.yml +0 -0
  13. {sxs-2025.0.13 → sxs-2025.0.14}/.github/scripts/parse_bump_rule.py +0 -0
  14. {sxs-2025.0.13 → sxs-2025.0.14}/.github/workflows/build.yml +0 -0
  15. {sxs-2025.0.13 → sxs-2025.0.14}/.github/workflows/pr_rtd_link.yml +0 -0
  16. {sxs-2025.0.13 → sxs-2025.0.14}/.gitignore +0 -0
  17. {sxs-2025.0.13 → sxs-2025.0.14}/.readthedocs.yaml +0 -0
  18. {sxs-2025.0.13 → sxs-2025.0.14}/LICENSE +0 -0
  19. {sxs-2025.0.13 → sxs-2025.0.14}/docs/api/catalog.md +0 -0
  20. {sxs-2025.0.13 → sxs-2025.0.14}/docs/api/horizons.md +0 -0
  21. {sxs-2025.0.13 → sxs-2025.0.14}/docs/api/load.md +0 -0
  22. {sxs-2025.0.13 → sxs-2025.0.14}/docs/api/metadata.md +0 -0
  23. {sxs-2025.0.13 → sxs-2025.0.14}/docs/api/simulations.md +0 -0
  24. {sxs-2025.0.13 → sxs-2025.0.14}/docs/api/time_series.md +0 -0
  25. {sxs-2025.0.13 → sxs-2025.0.14}/docs/api/waveforms.md +0 -0
  26. {sxs-2025.0.13 → sxs-2025.0.14}/docs/html/main.html +0 -0
  27. {sxs-2025.0.13 → sxs-2025.0.14}/docs/images/favicon.ico +0 -0
  28. {sxs-2025.0.13 → sxs-2025.0.14}/docs/index.md +0 -0
  29. {sxs-2025.0.13 → sxs-2025.0.14}/docs/javascript/mathjax.js +0 -0
  30. {sxs-2025.0.13 → sxs-2025.0.14}/docs/julia.md +0 -0
  31. {sxs-2025.0.13 → sxs-2025.0.14}/docs/mathematica.md +0 -0
  32. {sxs-2025.0.13 → sxs-2025.0.14}/docs/stylesheets/extra.css +0 -0
  33. {sxs-2025.0.13 → sxs-2025.0.14}/docs/tutorials/00-Introduction.ipynb +0 -0
  34. {sxs-2025.0.13 → sxs-2025.0.14}/docs/tutorials/01-Catalog_Dataframe.ipynb +0 -0
  35. {sxs-2025.0.13 → sxs-2025.0.14}/docs/tutorials/02-Simulation.ipynb +0 -0
  36. {sxs-2025.0.13 → sxs-2025.0.14}/docs/tutorials/03-Horizons.ipynb +0 -0
  37. {sxs-2025.0.13 → sxs-2025.0.14}/docs/tutorials/04-Waveforms.ipynb +0 -0
  38. {sxs-2025.0.13 → sxs-2025.0.14}/docs/tutorials/05-PreprocessingForFFTs.ipynb +0 -0
  39. {sxs-2025.0.13 → sxs-2025.0.14}/pyproject.toml +0 -0
  40. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/__init__.py +0 -0
  41. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/catalog/__init__.py +0 -0
  42. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/catalog/catalog.py +0 -0
  43. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/catalog/create.py +0 -0
  44. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/catalog/description.py +0 -0
  45. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/handlers.py +0 -0
  46. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/horizons/__init__.py +0 -0
  47. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/horizons/spec_horizons_h5.py +0 -0
  48. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/horizons/xor_multishuffle_bzip2.py +0 -0
  49. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/julia/GWFrames.py +0 -0
  50. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/julia/__init__.py +0 -0
  51. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/juliapkg.json +0 -0
  52. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/metadata/__init__.py +0 -0
  53. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/metadata/metadata.py +0 -0
  54. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/metadata/metric.py +0 -0
  55. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/simulations/__init__.py +0 -0
  56. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/simulations/analyze.py +0 -0
  57. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/simulations/local.py +0 -0
  58. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/simulations/simulation.py +0 -0
  59. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/simulations/simulations.py +0 -0
  60. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/time_series.py +0 -0
  61. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/__init__.py +0 -0
  62. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/bitwise.py +0 -0
  63. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/decimation/__init__.py +0 -0
  64. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/decimation/greedy_spline.py +0 -0
  65. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/decimation/linear_bisection.py +0 -0
  66. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/decimation/peak_greed.py +0 -0
  67. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/decimation/suppression.py +0 -0
  68. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/dicts.py +0 -0
  69. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/downloads.py +0 -0
  70. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/files.py +0 -0
  71. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/formats.py +0 -0
  72. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/inspire.py +0 -0
  73. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/lvcnr/__init__.py +0 -0
  74. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/lvcnr/comparisons.py +0 -0
  75. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/lvcnr/conversion.py +0 -0
  76. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/lvcnr/dataset.py +0 -0
  77. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/lvcnr/horizons.py +0 -0
  78. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/lvcnr/metadata.py +0 -0
  79. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/lvcnr/waveform_amp_phase.py +0 -0
  80. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/lvcnr/waveforms.py +0 -0
  81. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/monotonicity.py +0 -0
  82. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/pretty_print.py +0 -0
  83. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/references/__init__.py +0 -0
  84. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/references/ads.py +0 -0
  85. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/references/arxiv.py +0 -0
  86. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/references/fairchild_report.py +0 -0
  87. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/references/inspire.py +0 -0
  88. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/references/journal_abbreviations.py +0 -0
  89. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/references/references.py +0 -0
  90. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/select.py +0 -0
  91. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/smooth_functions.py +0 -0
  92. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/string_converters.py +0 -0
  93. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/sxs_directories.py +0 -0
  94. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/sxs_identifiers.py +0 -0
  95. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/utilities/url.py +0 -0
  96. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/__init__.py +0 -0
  97. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/alignment.py +0 -0
  98. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/format_handlers/__init__.py +0 -0
  99. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/format_handlers/grathena.py +0 -0
  100. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/format_handlers/lvc.py +0 -0
  101. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/format_handlers/nrar.py +0 -0
  102. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/format_handlers/rotating_paired_diff_multishuffle_bzip2.py +0 -0
  103. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/format_handlers/rotating_paired_xor_multishuffle_bzip2.py +0 -0
  104. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/format_handlers/spectre_cce_v1.py +0 -0
  105. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/memory.py +0 -0
  106. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/mode_utilities.py +0 -0
  107. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/norms.py +0 -0
  108. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/transformations.py +0 -0
  109. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/waveform_grid.py +0 -0
  110. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/waveform_mixin.py +0 -0
  111. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/waveform_modes.py +0 -0
  112. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/waveform_mts.py +0 -0
  113. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/waveforms/waveform_signal.py +0 -0
  114. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/zenodo/__init__.py +0 -0
  115. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/zenodo/api/__init__.py +0 -0
  116. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/zenodo/api/deposit.py +0 -0
  117. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/zenodo/api/login.py +0 -0
  118. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/zenodo/api/records.py +0 -0
  119. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/zenodo/catalog.py +0 -0
  120. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/zenodo/creators.py +0 -0
  121. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/zenodo/simannex.py +0 -0
  122. {sxs-2025.0.13 → sxs-2025.0.14}/sxs/zenodo/surrogatemodeling.py +0 -0
  123. {sxs-2025.0.13 → sxs-2025.0.14}/tests/__init__.py +0 -0
  124. {sxs-2025.0.13 → sxs-2025.0.14}/tests/conftest.py +0 -0
  125. {sxs-2025.0.13 → sxs-2025.0.14}/tests/test_alignment.py +0 -0
  126. {sxs-2025.0.13 → sxs-2025.0.14}/tests/test_catalog.py +0 -0
  127. {sxs-2025.0.13 → sxs-2025.0.14}/tests/test_horizons.py +0 -0
  128. {sxs-2025.0.13 → sxs-2025.0.14}/tests/test_julia.py +0 -0
  129. {sxs-2025.0.13 → sxs-2025.0.14}/tests/test_loader.py +0 -0
  130. {sxs-2025.0.13 → sxs-2025.0.14}/tests/test_metadata.py +0 -0
  131. {sxs-2025.0.13 → sxs-2025.0.14}/tests/test_simulation.py +0 -0
  132. {sxs-2025.0.13 → sxs-2025.0.14}/tests/test_time_series.py +0 -0
  133. {sxs-2025.0.13 → sxs-2025.0.14}/tests/test_transformations.py +0 -0
  134. {sxs-2025.0.13 → sxs-2025.0.14}/tests/test_utilities.py +0 -0
  135. {sxs-2025.0.13 → sxs-2025.0.14}/tests/test_waveform_rotations.py +0 -0
  136. {sxs-2025.0.13 → sxs-2025.0.14}/tests/test_waveforms.py +0 -0
@@ -16,5 +16,5 @@ authors:
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  title: "The sxs package"
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  license: MIT
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  doi: 10.5281/zenodo.4034006
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- version: 2025.0.13
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- date-released: 2025-05-12
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+ version: 2025.0.14
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+ date-released: 2025-05-14
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: sxs
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- Version: 2025.0.13
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+ Version: 2025.0.14
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  Summary: Interface to data produced by the Simulating eXtreme Spacetimes collaboration
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  Project-URL: Homepage, https://github.com/sxs-collaboration/sxs
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  Project-URL: Documentation, https://sxs.readthedocs.io/
@@ -78,7 +78,7 @@ Description-Content-Type: text/markdown
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  [![PyPI Version](https://img.shields.io/pypi/v/sxs?color=)](https://pypi.org/project/sxs/)
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  [![Conda Version](https://img.shields.io/conda/vn/conda-forge/sxs.svg?color=)](https://anaconda.org/conda-forge/sxs)
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  [![MIT License](https://img.shields.io/badge/license-MIT-blue.svg)](https://github.com/sxs-collaboration/sxs/blob/main/LICENSE)
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- [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/moble/sxs_notebooks/main)
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+ [![Open with marimo](https://marimo.io/shield.svg)](https://data.black-holes.org/)
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  # Simulating eXtreme Spacetimes package
@@ -142,11 +142,11 @@ for details.
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  If you use this package and/or the data it provides in your research,
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  please cite them, including the *specific version of the data* that
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  you use (see below). To help with this, we provide the function
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- `sxs.cite`, which will print out a citation — in BibTeX format or just
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- the DOIs for the package, the most recent paper describing the
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- catalog, the catalog data itself, and optionally individual
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- simulations.
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-
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+ `sxs.cite`. Use `print(sxs.cite())` to see BibTeX citations for the
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+ version of this package you are using, the most recent paper
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+ describing the catalog, and the catalog data itself. Use, e.g.,
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+ `print(sxs.cite("SXS:BBH:0001", "SXS:BBH:4001"))` to include citations
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+ for those specific simulations *and* the papers that introduced them.
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  ## Usage
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@@ -255,3 +255,30 @@ different methods; `h` and `psi4` are not just computed one from the
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  other by a double integral or differentiation. As a result, we
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  generally recommend using `h` instead of `psi4` unless you have very
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  specific requirements.
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+
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+ ## Contributing
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+
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+ Contributions are welcome! There are at least two ways to contribute
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+ to this codebase:
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+
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+ 1. If you find a bug or want to suggest an enhancement, use the [issue
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+ tracker](https://github.com/sxs-collaboration/sxs/issues) on
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+ GitHub. It's a good idea to look through past issues, too, to see
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+ if anybody has run into the same problem or made the same
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+ suggestion before.
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+ 2. If you will write or edit the python code, we use the [fork and
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+ pull
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+ request](https://help.github.com/articles/creating-a-pull-request-from-a-fork/)
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+ model.
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+
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+ You are also allowed to make use of this code for other purposes, as
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+ detailed in the [MIT license](LICENSE). For any type of contribution,
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+ please follow the [code of
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+ conduct](https://github.com/sxs-collaboration/.github/blob/master/CODE_OF_CONDUCT.md).
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+
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+ ## Reporting catalog data issues
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+
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+ If you find an issue with our data or metadata, please let us know!
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+ [Fill out an issue with the catalog data
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+ template](https://github.com/sxs-collaboration/sxs/issues/new?template=catalog-data-issue-template.md)
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+ and we will take a look as soon as possible.
@@ -3,7 +3,7 @@
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  [![PyPI Version](https://img.shields.io/pypi/v/sxs?color=)](https://pypi.org/project/sxs/)
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  [![Conda Version](https://img.shields.io/conda/vn/conda-forge/sxs.svg?color=)](https://anaconda.org/conda-forge/sxs)
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  [![MIT License](https://img.shields.io/badge/license-MIT-blue.svg)](https://github.com/sxs-collaboration/sxs/blob/main/LICENSE)
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- [![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/moble/sxs_notebooks/main)
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+ [![Open with marimo](https://marimo.io/shield.svg)](https://data.black-holes.org/)
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7
 
8
8
 
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  # Simulating eXtreme Spacetimes package
@@ -67,11 +67,11 @@ for details.
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  If you use this package and/or the data it provides in your research,
68
68
  please cite them, including the *specific version of the data* that
69
69
  you use (see below). To help with this, we provide the function
70
- `sxs.cite`, which will print out a citation — in BibTeX format or just
71
- the DOIs for the package, the most recent paper describing the
72
- catalog, the catalog data itself, and optionally individual
73
- simulations.
74
-
70
+ `sxs.cite`. Use `print(sxs.cite())` to see BibTeX citations for the
71
+ version of this package you are using, the most recent paper
72
+ describing the catalog, and the catalog data itself. Use, e.g.,
73
+ `print(sxs.cite("SXS:BBH:0001", "SXS:BBH:4001"))` to include citations
74
+ for those specific simulations *and* the papers that introduced them.
75
75
 
76
76
  ## Usage
77
77
 
@@ -180,3 +180,30 @@ different methods; `h` and `psi4` are not just computed one from the
180
180
  other by a double integral or differentiation. As a result, we
181
181
  generally recommend using `h` instead of `psi4` unless you have very
182
182
  specific requirements.
183
+
184
+ ## Contributing
185
+
186
+ Contributions are welcome! There are at least two ways to contribute
187
+ to this codebase:
188
+
189
+ 1. If you find a bug or want to suggest an enhancement, use the [issue
190
+ tracker](https://github.com/sxs-collaboration/sxs/issues) on
191
+ GitHub. It's a good idea to look through past issues, too, to see
192
+ if anybody has run into the same problem or made the same
193
+ suggestion before.
194
+ 2. If you will write or edit the python code, we use the [fork and
195
+ pull
196
+ request](https://help.github.com/articles/creating-a-pull-request-from-a-fork/)
197
+ model.
198
+
199
+ You are also allowed to make use of this code for other purposes, as
200
+ detailed in the [MIT license](LICENSE). For any type of contribution,
201
+ please follow the [code of
202
+ conduct](https://github.com/sxs-collaboration/.github/blob/master/CODE_OF_CONDUCT.md).
203
+
204
+ ## Reporting catalog data issues
205
+
206
+ If you find an issue with our data or metadata, please let us know!
207
+ [Fill out an issue with the catalog data
208
+ template](https://github.com/sxs-collaboration/sxs/issues/new?template=catalog-data-issue-template.md)
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+ and we will take a look as soon as possible.
@@ -0,0 +1,10 @@
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+ # `sxs.cite`
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+
3
+ For reasons of reproducibility — and for general academic integrity —
4
+ it is important to cite the specific packages and data you use in your
5
+ research. In particular, it is absolutely vital to cite the specific
6
+ version of the catalog of SXS simulations you use, as well as the
7
+ version of this `sxs` package that you use. The `sxs.cite` function
8
+ provides those specific citations.
9
+
10
+ ::: sxs.cite
@@ -1,6 +1,6 @@
1
1
  # `Simulation` classes
2
2
 
3
- The `Simulation` classes are the primary interface for accessing
3
+ The `Simulation` classes form the primary interface for accessing
4
4
  simulation data. They are the top-level objects that contain all the
5
5
  data for a single simulation. These classes are designed to be
6
6
  lightweight and to load data only when needed.
@@ -21,3 +21,6 @@ return the appropriate object.
21
21
 
22
22
  ## `Simulation_v2` class
23
23
  ::: sxs.simulations.simulation.Simulation_v2
24
+
25
+ ## `Simulation_v3` class
26
+ ::: sxs.simulations.simulation.Simulation_v3
@@ -30,6 +30,7 @@ nav:
30
30
  - "Time Series": "api/time_series.md"
31
31
  - "Horizons": "api/horizons.md"
32
32
  - "Waveforms": "api/waveforms.md"
33
+ - "Cite": "api/cite.md"
33
34
  - "Calling from Mathematica": "mathematica.md"
34
35
  - "Calling from Julia": "julia.md"
35
36
 
@@ -0,0 +1 @@
1
+ __version__ = "2025.0.14"
@@ -1,7 +1,7 @@
1
1
  def cite(*sxs_ids, bibtex=True):
2
2
  """Cite this package and/or data
3
3
 
4
- Prints out a citation for the package, the most recent paper
4
+ Prints out a citation for this package, the most recent paper
5
5
  describing the catalog, the catalog data itself, and optionally
6
6
  individual simulations.
7
7
 
@@ -1 +0,0 @@
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- __version__ = "2025.0.13"
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