surface-ion 1.0.3.dev0__tar.gz → 1.0.3.dev1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {surface-ion-1.0.3.dev0/surface_ion.egg-info → surface-ion-1.0.3.dev1}/PKG-INFO +4 -5
- {surface-ion-1.0.3.dev0 → surface-ion-1.0.3.dev1}/readme.md +3 -3
- {surface-ion-1.0.3.dev0 → surface-ion-1.0.3.dev1}/setup.py +1 -2
- {surface-ion-1.0.3.dev0 → surface-ion-1.0.3.dev1/surface_ion.egg-info}/PKG-INFO +4 -5
- {surface-ion-1.0.3.dev0 → surface-ion-1.0.3.dev1}/surface_ion.egg-info/requires.txt +0 -1
- {surface-ion-1.0.3.dev0 → surface-ion-1.0.3.dev1}/LICENSE +0 -0
- {surface-ion-1.0.3.dev0 → surface-ion-1.0.3.dev1}/MANIFEST.in +0 -0
- {surface-ion-1.0.3.dev0 → surface-ion-1.0.3.dev1}/setup.cfg +0 -0
- {surface-ion-1.0.3.dev0 → surface-ion-1.0.3.dev1}/surface_ion.egg-info/SOURCES.txt +0 -0
- {surface-ion-1.0.3.dev0 → surface-ion-1.0.3.dev1}/surface_ion.egg-info/dependency_links.txt +0 -0
- {surface-ion-1.0.3.dev0 → surface-ion-1.0.3.dev1}/surface_ion.egg-info/top_level.txt +0 -0
- {surface-ion-1.0.3.dev0 → surface-ion-1.0.3.dev1}/tests/FiveWireSimulation.py +0 -0
- {surface-ion-1.0.3.dev0 → surface-ion-1.0.3.dev1}/tests/RingSimulation.py +0 -0
- {surface-ion-1.0.3.dev0 → surface-ion-1.0.3.dev1}/tests/stability.ipynb +0 -0
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Metadata-Version: 2.1
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Name: surface-ion
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Version: 1.0.3.
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Version: 1.0.3.dev1
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Summary: Python package for simulation and analysis of ion crystals in surface traps.
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Home-page: https://github.com/underforestaaa/Sion
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Author: Artem Podlesnyy
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Requires-Dist: jinja2>=2.9.6
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Requires-Dist: scipy>=1.12.1
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Requires-Dist: scikit-optimize>=0.10.2
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Requires-Dist: electrode>=1.4
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Requires-Dist: matplotlib>=3.9.2
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Requires-Dist: gdspy>=1.6.13
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Requires-Dist: shapely>=2.0.6
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To use *Sion*, the following packages are required to be installed from source and tested:
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- [pylion package](https://bitbucket.org/dtrypogeorgos/pylion/src/master/): LAMMPS wrapper for ion dynamics simulation. This package requires installation of LAMMPS software with the specific version. It will work well with the latest LAMMPS version, if in source file *pylion.py* at line 51 you change "lmp_serial" to "lmp".
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- [electrode package](https://github.com/nist-ionstorage/electrode): Python package for convenient definition and analysis of surface electrode traps.
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!Note: for correct execution of these packages, numpy<=1.21.0 is
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!Note: for correct execution of these packages, numpy<=1.21.0 is required.
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The newest version may be installed via pip:
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<code>pip install surface-ion</code>
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## Getting started
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*Sion* works with surface traps, defined through the *electrode* package. The simulation of ion dynamics is carried through the *pylion* environment.
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All functions, presented in *Sion* are described in example notebooks. Main file *sion.py*
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All functions, presented in *Sion* are described in example notebooks. Main file *sion.py* contains docs for each function.
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To publish the results, obtained with *Sion*, the following articles should be cited:
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1. [Surface trap with adjustable ion couplings for scalable and parallel gates](https://journals.aps.org/pra/abstract/10.1103/PhysRevA.109.022605)
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* Simulation of ion motion in arbitrary polygon and point electrode surface trap.
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* Optimization and simulation of arbitrary ion shuttling in polygon traps.
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* Calculation of normal modes for general case of 1D, 2D, 3D mixed species ion crystals with arbitrary set of ions' secular frequencies.
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* Calculation of anharmonic
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* Calculation of anharmonic Mathieu modes of ion crystals in surface traps.
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* Stability analysis of asymmetric planar traps.
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* Optimization of DC voltage set of a planar trap to match the desired secular frequency and radial mode rotation angle in given positions.
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* Convenient trap design. Layout may be imported from GDS file or created by defining the arbitrary electrode shape boundary.
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To use *Sion*, the following packages are required to be installed from source and tested:
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- [pylion package](https://bitbucket.org/dtrypogeorgos/pylion/src/master/): LAMMPS wrapper for ion dynamics simulation. This package requires installation of LAMMPS software with the specific version. It will work well with the latest LAMMPS version, if in source file *pylion.py* at line 51 you change "lmp_serial" to "lmp".
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- [electrode package](https://github.com/nist-ionstorage/electrode): Python package for convenient definition and analysis of surface electrode traps.
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!Note: for correct execution of these packages, numpy<=1.21.0 is
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!Note: for correct execution of these packages, numpy<=1.21.0 is required.
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The newest version may be installed via pip:
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<code>pip install surface-ion</code>
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## Getting started
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*Sion* works with surface traps, defined through the *electrode* package. The simulation of ion dynamics is carried through the *pylion* environment.
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All functions, presented in *Sion* are described in example notebooks. Main file *sion.py*
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All functions, presented in *Sion* are described in example notebooks. Main file *sion.py* contains docs for each function.
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To publish the results, obtained with *Sion*, the following articles should be cited:
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1. [Surface trap with adjustable ion couplings for scalable and parallel gates](https://journals.aps.org/pra/abstract/10.1103/PhysRevA.109.022605)
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* Simulation of ion motion in arbitrary polygon and point electrode surface trap.
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* Optimization and simulation of arbitrary ion shuttling in polygon traps.
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* Calculation of normal modes for general case of 1D, 2D, 3D mixed species ion crystals with arbitrary set of ions' secular frequencies.
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-
* Calculation of anharmonic
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* Calculation of anharmonic Mathieu modes of ion crystals in surface traps.
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* Stability analysis of asymmetric planar traps.
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* Optimization of DC voltage set of a planar trap to match the desired secular frequency and radial mode rotation angle in given positions.
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* Convenient trap design. Layout may be imported from GDS file or created by defining the arbitrary electrode shape boundary.
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'jinja2>=2.9.6',
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'scipy>=1.12.1',
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'scikit-optimize>=0.10.2',
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'electrode>=1.4',
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'matplotlib>=3.9.2',
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'gdspy>=1.6.13',
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'shapely>=2.0.6',
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setup(
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name='surface-ion',
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version='1.0.
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version='1.0.3dev1',
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description=short_description,
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long_description=readme,
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long_description_content_type='text/markdown',
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Metadata-Version: 2.1
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Name: surface-ion
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Version: 1.0.3.
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Version: 1.0.3.dev1
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Summary: Python package for simulation and analysis of ion crystals in surface traps.
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5
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Home-page: https://github.com/underforestaaa/Sion
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Author: Artem Podlesnyy
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@@ -19,7 +19,6 @@ Requires-Dist: cython>=3.0.1
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Requires-Dist: jinja2>=2.9.6
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Requires-Dist: scipy>=1.12.1
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Requires-Dist: scikit-optimize>=0.10.2
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Requires-Dist: electrode>=1.4
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Requires-Dist: matplotlib>=3.9.2
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Requires-Dist: gdspy>=1.6.13
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Requires-Dist: shapely>=2.0.6
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@@ -35,7 +34,7 @@ Python package for simulation and analysis of ion crystals in surface electrode
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35
34
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To use *Sion*, the following packages are required to be installed from source and tested:
|
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36
35
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- [pylion package](https://bitbucket.org/dtrypogeorgos/pylion/src/master/): LAMMPS wrapper for ion dynamics simulation. This package requires installation of LAMMPS software with the specific version. It will work well with the latest LAMMPS version, if in source file *pylion.py* at line 51 you change "lmp_serial" to "lmp".
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- [electrode package](https://github.com/nist-ionstorage/electrode): Python package for convenient definition and analysis of surface electrode traps.
|
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-
!Note: for correct execution of these packages, numpy<=1.21.0 is
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37
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+
!Note: for correct execution of these packages, numpy<=1.21.0 is required.
|
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39
38
|
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40
39
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The newest version may be installed via pip:
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41
40
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<code>pip install surface-ion</code>
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@@ -44,7 +43,7 @@ The newest version may be installed via pip:
|
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44
43
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## Getting started
|
|
45
44
|
|
|
46
45
|
*Sion* works with surface traps, defined through the *electrode* package. The simulation of ion dynamics is carried through the *pylion* environment.
|
|
47
|
-
All functions, presented in *Sion* are described in example notebooks. Main file *sion.py*
|
|
46
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+
All functions, presented in *Sion* are described in example notebooks. Main file *sion.py* contains docs for each function.
|
|
48
47
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|
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49
48
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To publish the results, obtained with *Sion*, the following articles should be cited:
|
|
50
49
|
1. [Surface trap with adjustable ion couplings for scalable and parallel gates](https://journals.aps.org/pra/abstract/10.1103/PhysRevA.109.022605)
|
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@@ -54,7 +53,7 @@ To publish the results, obtained with *Sion*, the following articles should be c
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|
54
53
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* Simulation of ion motion in arbitrary polygon and point electrode surface trap.
|
|
55
54
|
* Optimization and simulation of arbitrary ion shuttling in polygon traps.
|
|
56
55
|
* Calculation of normal modes for general case of 1D, 2D, 3D mixed species ion crystals with arbitrary set of ions' secular frequencies.
|
|
57
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-
* Calculation of anharmonic
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56
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+
* Calculation of anharmonic Mathieu modes of ion crystals in surface traps.
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58
57
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* Stability analysis of asymmetric planar traps.
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|
59
58
|
* Optimization of DC voltage set of a planar trap to match the desired secular frequency and radial mode rotation angle in given positions.
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60
59
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* Convenient trap design. Layout may be imported from GDS file or created by defining the arbitrary electrode shape boundary.
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