substrate-kernel 0.0.1__tar.gz → 1.0.0__tar.gz

substrate_kernel-1.0.0/.github/ISSUE_TEMPLATE/bug_report.yml

@@ -0,0 +1,17 @@
+name: Bug report
+description: Something behaves wrong or crashes.
+labels: ["bug"]
+body:
+  - type: textarea
+    id: what
+    attributes:
+      label: What happened
+      description: What you did, what you expected, what you got. A run record that shows the problem helps most.
+    validations:
+      required: true
+  - type: input
+    id: version
+    attributes:
+      label: Version / Python / OS
+    validations:
+      required: true

substrate_kernel-1.0.0/.github/ISSUE_TEMPLATE/config.yml

@@ -0,0 +1 @@
+blank_issues_enabled: true

substrate_kernel-1.0.0/.github/ISSUE_TEMPLATE/feature.yml

@@ -0,0 +1,10 @@
+name: Feature or topology idea
+description: Something the runtime should do, or a topology worth bundling.
+labels: ["enhancement"]
+body:
+  - type: textarea
+    id: what
+    attributes:
+      label: The idea
+    validations:
+      required: true

substrate_kernel-1.0.0/.github/PULL_REQUEST_TEMPLATE.md

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+## What
+
+## Why
+
+## Gates
+
+- [ ] `scripts/ci_local.sh` green

substrate_kernel-1.0.0/.github/workflows/ci.yml

@@ -0,0 +1,48 @@
+name: CI
+
+on:
+  push:
+  pull_request:
+
+jobs:
+  gates:
+    name: gates (${{ matrix.os }}, py${{ matrix.python }})
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest]
+        python: ["3.12", "3.13", "3.14"]
+
+    steps:
+      - uses: actions/checkout@v5
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@v6
+
+      - name: Create the environment
+        run: uv venv --python ${{ matrix.python }}
+
+      - name: Install (editable, with dev extras)
+        run: uv pip install -e ".[dev]"
+
+      - name: Lint
+        run: uv run ruff check
+
+      - name: Format check
+        run: uv run ruff format --check
+
+      - name: Type-check (strict)
+        run: uv run mypy
+
+      - name: Tests
+        run: uv run pytest
+
+      - name: Import contract (F-API-6)
+        run: uv run lint-imports
+
+      # The throughput floor (conformance check 15 / N-PERF-1) is hardware-sensitive, so it is
+      # deliberately OFF the CI matrix: --no-perf makes check 15 an honest SKIP. The floor is
+      # verified separately on controlled hardware (SUBSTRATE_PERF_GATE=1; see CONTRIBUTING.md).
+      - name: Conformance (no perf floor)
+        run: uv run substrate conformance --no-perf

substrate_kernel-1.0.0/.gitignore

@@ -0,0 +1,41 @@
+__pycache__/
+*.pyc
+.DS_Store
+.pytest_cache/
+.signal_traces/
+*.egg-info/
+.venv/
+dist/
+build/
+
+# Tool caches — untracked, regenerated; never source.
+.mypy_cache/
+.ruff_cache/
+.hypothesis/
+.benchmarks/
+.import_linter_cache/
+
+# Benchmark run artifacts — regenerable data written live by scripts/bench_coding.py, not source.
+# The verdicts themselves are recorded in process/BLACKBOARD.md.
+process/bench_results/
+
+# SWE-bench harness run outputs (generated by the eval harness/smoke — logs, run reports), not source.
+/logs/
+process/swebench_smoke/
+/gold.goldsmoke.json
+# Assay/SWE-bench run artifacts (predictions + harness reports) — generated, not source.
+/process/assay_smoke/
+/process/assay_ws_gate/
+/process/assay_host/
+/process/assay_run/
+/process/flask_solve/
+/process/solve_runs/
+substrate-*.json
+substrate-coding-flow.*.json
+
+# Container-arena run logs — transient per-(model,task) research artifacts, regenerable by
+# scripts/agent_arena.py; the findings they support live in process/RESEARCH.md, not the logs.
+arena-logs*/
+
+# Local disposal archive (2026-07-22 top-level cleanup) — disk-only, never history.
+process/archive/root-debris-20260722/

substrate_kernel-1.0.0/CHANGELOG.md

@@ -0,0 +1,14 @@
+# Changelog
+
+## 1.0.0 — 2026-07-24
+
+First release: the full runtime. The eight primitives, both persistence
+modes, replay Levels 1/2/3(a), the read projections (provenance, diff, narration,
+graphs), composition, the 17-check conformance suite, bundled topologies with
+committed run records, and the model adapters. Level-3(b) byte-identical
+re-execution and Windows persistent-bus support are deferred, with rationale in
+`docs/specs/` amendments.
+
+## 0.0.1 — 2026-07-24
+
+Name-claim placeholder on PyPI. No runtime.

substrate_kernel-1.0.0/CONTRIBUTING.md

@@ -0,0 +1,83 @@
+# Contributing to Substrate
+
+## Spec corpus
+
+Substrate implements a four-document spec corpus (in this repo); the code is held
+accountable to it, not the other way round:
+
+- `docs/specs/kernel_spec/v15.md` — the eight primitives, the append cycle, replay
+  (+ `v16_reconciliation_note.md`).
+- `docs/specs/product_spec/draft7.md` — requirements, the 17 conformance checks, reference
+  topologies.
+- `docs/specs/technical_spec/draft5.md` — byte layout, writer cycle, public API.
+- `docs/specs/design_spec/draft1.md` — API ergonomics, CLI UX, error UX.
+
+### Spec amendments
+
+Changes to a shipped spec are made as **additive amendment files**, never by editing
+the base draft (the base stays as the audit trail):
+
+- `docs/specs/product_spec/draft7_amendment_A1_replay_3b.md` — replay Level 3(b) deferral +
+  the D-8 supplementary-metadata exclusion set.
+- `docs/specs/product_spec/draft7_amendment_A2_nperf1.md` — the N-PERF-1 throughput floor
+  re-baseline.
+- `docs/specs/product_spec/draft7_amendment_A3.md` — the code↔spec reconciliations
+  (check-5 wall-clock half, F-LIFE-2 let-finish/subtree deferral, RunStarted-manifest
+  fidelity, L1-replay scope, read-API naming).
+
+## Signal-Driven Development
+
+Built under Signal-Driven Development (`../sdd-kit-2/`). The locked signal
+vocabulary is `process/signals/0.2.json` — an additive successor to `process/signals/0.1.json`,
+which is retained as the v0.1 audit trail. The rationale for the 0.1 → 0.2
+evolution is `process/signals/0.2-rationale.md`.
+
+Implementation roadmap: `process/sprints/PHASE1_PLAN.md`. Working notes and per-wave
+records live in `process/BLACKBOARD.md`.
+
+## Gates
+
+**The default gate is local: `scripts/ci_local.sh`** (the same stack, py3.12/3.13/3.14 in
+isolated envs; `scripts/ci_local_ubuntu.sh` for the linux cells via Docker). As of
+2026-07-22 hosted GitHub Actions is unavailable (Actions minutes exhausted) and the
+verification bar must not depend on a hosted runner — "gates green" means the local
+matrix exiting 0, watched to conclusion. The workflow file stays; when Actions returns
+it is a backstop, not the bar.
+
+Every change must keep these green (the per-version stack, identical local and hosted —
+`.github/workflows/ci.yml` runs it on {ubuntu, macOS} × Python {3.12, 3.13, 3.14}):
+
+```
+uv run ruff check          # lint
+uv run ruff format --check # format
+uv run mypy                # type-check (strict)
+uv run pytest              # tests
+uv run lint-imports        # F-API-6: cli imports only substrate.api (import-linter)
+uv run substrate conformance --no-perf   # the 17 conformance checks (perf floor skipped)
+```
+
+`substrate conformance` is the release gate (the 17 §7 checks). CI runs it with
+`--no-perf` because the throughput floor (check 15 / N-PERF-1) is hardware-sensitive;
+that makes check 15 an honest SKIP in CI. Verify the floor separately on controlled
+hardware with `SUBSTRATE_PERF_GATE=1 uv run pytest tests/test_perf.py` (or the default
+`uv run substrate conformance` without `--no-perf`).
+
+The API reference (`docs/api.md`) is **generated** — never hand-edit it. After any
+change to the public surface (`substrate.api.__all__`) or a public docstring, run
+`uv run python scripts/gen_api_docs.py` and commit the regenerated file. The committed
+walkthrough run records (`docs/walkthroughs/records/`) regenerate with
+`uv run python scripts/gen_walkthrough_records.py`.
+
+## Post-1.0 deferrals
+
+Deliberately not shipped in v1.0 (deferred with cause, not gaps):
+
+- **Replay Level 3(b)** — byte-identical substitution re-execution (needs a replay-mode
+  writer that replays recorded `t`; amendment A1.1). Levels 1/2/3a + D-8 ship.
+- **`let_finish` (F-LIFE-2 recipe) + the `let-finish` Decision** — the "drain in-flight
+  then finalise" terminal has no runtime dispatch branch, so shipping the enum value /
+  recipe would be a silent no-op. Removed for v1.0 and deferred until the dispatch +
+  admission-stop mechanism is built. (`cancel_all_others`, `quiescence_with_watchdog`,
+  `threshold_count`, `all_completed`, `pause_await_input`, `any_of`, `all_of` all ship.)
+- **`subtree_cancellation`** — needs a 6th decision value / scope field (vocab-blocked).
+- A **compiled JCS encoder** — the throughput lever beyond the current floor (A2).

substrate_kernel-1.0.0/Dockerfile.arena

@@ -0,0 +1,31 @@
+# The tool-loop agent TEST ARENA — emphatically NOT the product.
+#
+# The product runs host-native: direct filesystem access, real autonomy, exactly like Claude
+# Code operating in your project. Containerizing THAT would be pointless — it needs your real
+# machine, your files, your Ollama.
+#
+# This image is a DISPOSABLE ARENA. A model drives the real FULL_SUITE (read/write/edit/bash/
+# glob/grep) against a throwaway filesystem, so we can let models go wild on open-ended tasks —
+# "build me X", weird questions, whatever — and capture the crashes and edge cases we'd never
+# think to script (the `glob **/*.py` → blob-offload → wedged-loop bug was exactly this shape).
+# Destructive tool use here costs nothing: `docker rm` and it's gone.
+#
+# The MODEL still runs on the HOST (Ollama, reached at host.docker.internal via OLLAMA_BASE_URL);
+# only the agent loop and its tool side-effects happen inside the container.
+FROM ghcr.io/astral-sh/uv:python3.12-bookworm-slim
+
+WORKDIR /substrate
+
+# Dependency layer first (cached across source edits): the lockfile + package metadata only.
+COPY pyproject.toml uv.lock README.md ./
+COPY src ./src
+RUN uv sync --extra openai-compat --no-dev --frozen
+
+COPY scripts ./scripts
+
+# The scratch workspace the agent writes into — disposable with the container.
+RUN mkdir -p /arena
+ENV OLLAMA_BASE_URL=http://host.docker.internal:11434
+
+# The single-task runbook entrypoint; the arena runner passes --model / --task / --workdir /arena.
+ENTRYPOINT ["uv", "run", "python", "scripts/run_tool_agent.py"]

substrate_kernel-1.0.0/LICENSE

@@ -0,0 +1,202 @@
+
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