struphy 2.4.5__tar.gz → 2.5.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (370) hide show
  1. {struphy-2.4.5/src/struphy.egg-info → struphy-2.5.0}/PKG-INFO +22 -19
  2. {struphy-2.4.5 → struphy-2.5.0}/pyproject.toml +24 -20
  3. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/bsplines/bsplines.py +149 -134
  4. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/bsplines/evaluation_kernels_3d.py +2 -2
  5. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/bsplines/tests/test_bsplines_kernels.py +3 -4
  6. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/bsplines/tests/test_eval_spline_mpi.py +3 -10
  7. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/console/compile.py +2 -2
  8. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/console/format.py +699 -589
  9. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/console/main.py +356 -414
  10. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/console/params.py +21 -2
  11. struphy-2.5.0/src/struphy/console/pproc.py +132 -0
  12. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/console/profile.py +2 -2
  13. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/console/run.py +103 -111
  14. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/console/test.py +39 -36
  15. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/console/tests/test_console.py +1 -2
  16. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/console/units.py +6 -7
  17. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/dependencies.py +32 -32
  18. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/diagnostics/console_diagn.py +1 -1
  19. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/diagnostics/continuous_spectra.py +3 -3
  20. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/diagnostics/diagn_tools.py +1 -1
  21. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/diagnostics/paraview/mesh_creator.py +2 -2
  22. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/diagnostics/paraview/vtk_writer.py +10 -9
  23. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/dispersion_relations/analytic.py +1 -1
  24. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/dispersion_relations/base.py +2 -1
  25. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/dispersion_relations/utilities.py +7 -5
  26. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/derivatives.py +62 -68
  27. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/kernels_projectors_global.py +307 -227
  28. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/MHD_eigenvalues_cylinder_1D.py +1 -1
  29. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/control_variate.py +5 -5
  30. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/fB_massless_control_variate.py +7 -7
  31. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/fnB_massless_control_variate.py +8 -7
  32. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/massless_control_variate.py +6 -5
  33. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/emw_operators.py +1 -1
  34. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/inner_products_1d.py +2 -1
  35. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/inner_products_2d.py +1 -1
  36. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/inner_products_3d.py +1 -1
  37. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/l2_error_1d.py +2 -1
  38. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/l2_error_2d.py +1 -1
  39. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/l2_error_3d.py +1 -1
  40. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/mass_matrices_3d_pre.py +28 -64
  41. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_arrays.py +6 -6
  42. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_massless_linear_operators.py +9 -9
  43. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_vv_kernel.py +1 -1
  44. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/mhd_operators_MF.py +1 -1
  45. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/projectors_local/pro_local/mhd_operators_3d_local.py +36 -36
  46. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/projectors_local/pro_local/projectors_local.py +1 -1
  47. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/projectors_local/shape_pro_local/shape_function_projectors_L2.py +11 -11
  48. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/projectors_local/shape_pro_local/shape_function_projectors_local.py +11 -11
  49. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/mass_matrices_1d.py +100 -107
  50. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/mass_matrices_2d.py +303 -224
  51. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/mass_matrices_3d.py +341 -219
  52. struphy-2.5.0/src/struphy/eigenvalue_solvers/mhd_axisymmetric_main.py +261 -0
  53. struphy-2.5.0/src/struphy/eigenvalue_solvers/mhd_axisymmetric_pproc.py +71 -0
  54. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/mhd_operators.py +584 -587
  55. struphy-2.5.0/src/struphy/eigenvalue_solvers/mhd_operators_core.py +1917 -0
  56. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/projectors_global.py +417 -535
  57. struphy-2.5.0/src/struphy/eigenvalue_solvers/spline_space.py +3242 -0
  58. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/examples/_draw_parallel.py +2 -2
  59. struphy-2.5.0/src/struphy/examples/restelli2018/callables.py +300 -0
  60. struphy-2.5.0/src/struphy/feec/banded_to_stencil_kernels.py +55 -0
  61. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/basis_projection_kernels.py +2 -2
  62. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/basis_projection_ops.py +47 -22
  63. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/linear_operators.py +89 -91
  64. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/local_projectors_kernels.py +2 -2
  65. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/mass.py +93 -16
  66. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/mass_kernels.py +318 -168
  67. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/preconditioner.py +8 -2
  68. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/projectors.py +15 -7
  69. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/psydac_derham.py +35 -16
  70. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/tests/test_basis_ops.py +5 -6
  71. struphy-2.5.0/src/struphy/feec/tests/test_derham.py +246 -0
  72. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/tests/test_eval_field.py +59 -25
  73. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/tests/test_field_init.py +15 -12
  74. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/tests/test_l2_projectors.py +3 -5
  75. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/tests/test_local_projectors.py +23 -7
  76. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/tests/test_lowdim_nel_is_1.py +2 -4
  77. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/tests/test_mass_matrices.py +8 -12
  78. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/tests/test_toarray_struphy.py +43 -36
  79. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/tests/test_tosparse_struphy.py +50 -34
  80. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/tests/xx_test_preconds.py +2 -2
  81. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/utilities.py +1 -1
  82. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/utilities_kernels.py +2 -2
  83. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/utilities_local_projectors.py +1 -2
  84. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/feec/variational_utilities.py +1 -1
  85. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/fields_background/base.py +15 -8
  86. struphy-2.5.0/src/struphy/fields_background/coil_fields/base.py +125 -0
  87. struphy-2.5.0/src/struphy/fields_background/coil_fields/coil_fields.py +86 -0
  88. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/fields_background/equils.py +306 -245
  89. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/fields_background/tests/test_desc_equil.py +2 -1
  90. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/fields_background/tests/test_generic_equils.py +1 -1
  91. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/fields_background/tests/test_mhd_equils.py +1 -1
  92. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/fields_background/tests/test_numerical_mhd_equil.py +1 -1
  93. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/geometry/base.py +190 -337
  94. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/geometry/domains.py +226 -541
  95. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/geometry/evaluation_kernels.py +3 -3
  96. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/geometry/mappings_kernels.py +2 -2
  97. struphy-2.5.0/src/struphy/geometry/tests/test_domain.py +923 -0
  98. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/geometry/transform_kernels.py +2 -2
  99. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/geometry/utilities.py +1 -1
  100. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/geometry/utilities_kernels.py +36 -38
  101. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/initial/eigenfunctions.py +1 -1
  102. struphy-2.5.0/src/struphy/initial/perturbations.py +2112 -0
  103. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/initial/tests/test_init_perturbations.py +10 -12
  104. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/initial/utilities.py +1 -1
  105. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/io/inp/parameters.yml +3 -3
  106. struphy-2.5.0/src/struphy/io/inp/verification/Maxwell_coaxial.yml +73 -0
  107. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/io/output_handling.py +27 -38
  108. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/io/setup.py +8 -2
  109. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/kinetic_background/base.py +1 -2
  110. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/kinetic_background/maxwellians.py +1 -2
  111. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/kinetic_background/moment_functions.py +1 -1
  112. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/kinetic_background/tests/test_base.py +17 -22
  113. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/kinetic_background/tests/test_maxwellians.py +16 -8
  114. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/linear_algebra/linalg_kron.py +89 -79
  115. struphy-2.5.0/src/struphy/linear_algebra/saddle_point.py +565 -0
  116. struphy-2.5.0/src/struphy/linear_algebra/stencil_dot_kernels.py +187 -0
  117. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/linear_algebra/stencil_transpose_kernels.py +136 -142
  118. struphy-2.5.0/src/struphy/linear_algebra/tests/test_saddle_point_propagator.py +424 -0
  119. struphy-2.5.0/src/struphy/linear_algebra/tests/test_saddlepoint_massmatrices.py +413 -0
  120. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/linear_algebra/tests/test_stencil_dot_kernels.py +4 -8
  121. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/linear_algebra/tests/test_stencil_transpose_kernels.py +4 -8
  122. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/main.py +21 -11
  123. struphy-2.5.0/src/struphy/models/__init__.py +76 -0
  124. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/models/base.py +18 -16
  125. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/models/fluid.py +132 -3
  126. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/models/hybrid.py +16 -40
  127. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/models/kinetic.py +12 -57
  128. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/models/tests/test_xxpproc.py +5 -5
  129. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/models/tests/util.py +1 -1
  130. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/models/tests/verification.py +135 -5
  131. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/models/toy.py +159 -48
  132. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/ode/solvers.py +1 -1
  133. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/ode/tests/test_ode_feec.py +2 -3
  134. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/ode/utils.py +1 -1
  135. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/accumulation/accum_kernels.py +97 -89
  136. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/accumulation/accum_kernels_gc.py +43 -33
  137. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/accumulation/filler_kernels.py +214 -27
  138. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/accumulation/filter_kernels.py +23 -23
  139. struphy-2.5.0/src/struphy/pic/accumulation/particle_to_mat_kernels.py +13230 -0
  140. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/accumulation/particles_to_grid.py +29 -23
  141. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/base.py +816 -372
  142. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/particles.py +42 -24
  143. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/pushing/eval_kernels_gc.py +419 -5
  144. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/pushing/pusher.py +23 -17
  145. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/pushing/pusher_kernels.py +155 -27
  146. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/pushing/pusher_kernels_gc.py +3 -3
  147. struphy-2.5.0/src/struphy/pic/pushing/pusher_utilities_kernels.py +79 -0
  148. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/sobol_seq.py +291 -87
  149. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/sorting_kernels.py +93 -42
  150. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/sph_eval_kernels.py +44 -24
  151. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_accum_vec_H1.py +38 -19
  152. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_accumulation.py +23 -13
  153. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_binning.py +66 -36
  154. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_draw_parallel.py +2 -4
  155. struphy-2.5.0/src/struphy/pic/tests/test_mat_vec_filler.py +408 -0
  156. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_pic_legacy_files/accumulation.py +2 -2
  157. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_pic_legacy_files/pusher.py +1 -2
  158. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_pushers.py +20 -24
  159. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_sorting.py +40 -20
  160. struphy-2.5.0/src/struphy/pic/tests/test_sph.py +980 -0
  161. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_tesselation.py +2 -4
  162. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/utilities.py +1 -2
  163. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/utilities_kernels.py +6 -6
  164. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/polar/basic.py +3 -2
  165. struphy-2.5.0/src/struphy/polar/extraction_operators.py +1252 -0
  166. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/polar/linear_operators.py +78 -116
  167. struphy-2.5.0/src/struphy/polar/tests/test_legacy_polar_splines.py +169 -0
  168. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/polar/tests/test_polar.py +136 -160
  169. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/post_processing/likwid/plot_likwidproject.py +1 -1
  170. struphy-2.5.0/src/struphy/post_processing/likwid/plot_time_traces.py +414 -0
  171. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/post_processing/likwid/roofline_plotter.py +2 -1
  172. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/post_processing/orbits/orbits_tools.py +26 -24
  173. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/post_processing/post_processing_tools.py +1 -1
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  331. {struphy-2.4.5/src/struphy/ode → struphy-2.5.0/src/struphy/linear_algebra/tests}/__init__.py +0 -0
  332. {struphy-2.4.5/src/struphy/ode → struphy-2.5.0/src/struphy/models}/tests/__init__.py +0 -0
  333. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/models/tests/test_fluid_models.py +0 -0
  334. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/models/tests/test_hybrid_models.py +0 -0
  335. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/models/tests/test_kinetic_models.py +0 -0
  336. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/models/tests/test_toy_models.py +0 -0
  337. {struphy-2.4.5/src/struphy/pic → struphy-2.5.0/src/struphy/ode}/__init__.py +0 -0
  338. {struphy-2.4.5/src/struphy/pic/accumulation → struphy-2.5.0/src/struphy/ode/tests}/__init__.py +0 -0
  339. {struphy-2.4.5/src/struphy/pic/pushing → struphy-2.5.0/src/struphy/pic}/__init__.py +0 -0
  340. {struphy-2.4.5/src/struphy/pic/tests → struphy-2.5.0/src/struphy/pic/accumulation}/__init__.py +0 -0
  341. {struphy-2.4.5/src/struphy/pic/tests/test_pic_legacy_files → struphy-2.5.0/src/struphy/pic/pushing}/__init__.py +0 -0
  342. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/sampling_kernels.py +0 -0
  343. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/sph_smoothing_kernels.py +0 -0
  344. {struphy-2.4.5/src/struphy/polar → struphy-2.5.0/src/struphy/pic/tests}/__init__.py +0 -0
  345. {struphy-2.4.5/src/struphy/polar/tests → struphy-2.5.0/src/struphy/pic/tests/test_pic_legacy_files}/__init__.py +0 -0
  346. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_pic_legacy_files/accumulation_kernels_3d.py +0 -0
  347. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_pic_legacy_files/mappings_3d.py +0 -0
  348. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_pic_legacy_files/mappings_3d_fast.py +0 -0
  349. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_pic_legacy_files/pusher_pos.py +0 -0
  350. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_pic_legacy_files/pusher_vel_2d.py +0 -0
  351. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_pic_legacy_files/pusher_vel_3d.py +0 -0
  352. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_pic_legacy_files/spline_evaluation_2d.py +0 -0
  353. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/pic/tests/test_pic_legacy_files/spline_evaluation_3d.py +0 -0
  354. {struphy-2.4.5/src/struphy/post_processing → struphy-2.5.0/src/struphy/polar}/__init__.py +0 -0
  355. {struphy-2.4.5/src/struphy/post_processing/likwid → struphy-2.5.0/src/struphy/polar/tests}/__init__.py +0 -0
  356. {struphy-2.4.5/src/struphy/post_processing/orbits → struphy-2.5.0/src/struphy/post_processing}/__init__.py +0 -0
  357. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/post_processing/cprofile_analyser.py +0 -0
  358. {struphy-2.4.5/src/struphy/post_processing/tests → struphy-2.5.0/src/struphy/post_processing/likwid}/__init__.py +0 -0
  359. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/post_processing/likwid/hardware_dicts.py +0 -0
  360. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/post_processing/likwid/likwid_parser.py +0 -0
  361. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/post_processing/likwid/maxplotlylib.py +0 -0
  362. {struphy-2.4.5/src/struphy/profiling → struphy-2.5.0/src/struphy/post_processing/orbits}/__init__.py +0 -0
  363. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/post_processing/orbits/orbits_kernels.py +0 -0
  364. {struphy-2.4.5/src/struphy/propagators → struphy-2.5.0/src/struphy/post_processing/tests}/__init__.py +0 -0
  365. {struphy-2.4.5/src/struphy/propagators/tests → struphy-2.5.0/src/struphy/profiling}/__init__.py +0 -0
  366. {struphy-2.4.5/src/struphy/utils → struphy-2.5.0/src/struphy/propagators/tests}/__init__.py +0 -0
  367. {struphy-2.4.5 → struphy-2.5.0}/src/struphy/utils/set_release_dependencies.py +0 -0
  368. {struphy-2.4.5 → struphy-2.5.0}/src/struphy.egg-info/dependency_links.txt +0 -0
  369. {struphy-2.4.5 → struphy-2.5.0}/src/struphy.egg-info/entry_points.txt +0 -0
  370. {struphy-2.4.5 → struphy-2.5.0}/src/struphy.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: struphy
3
- Version: 2.4.5
3
+ Version: 2.5.0
4
4
  Summary: Multi-model plasma physics package
5
5
  Author: Max Planck Institute for Plasma Physics
6
6
  Author-email: stefan.possanner@ipp.mpg.de, eric.sonnendruecker@ipp.mpg.de
@@ -30,38 +30,43 @@ Classifier: Programming Language :: Python :: 3
30
30
  Requires-Python: >=3.10
31
31
  Description-Content-Type: text/markdown
32
32
  License-File: LICENSE
33
- Requires-Dist: numpy<=2.2.5
33
+ Requires-Dist: numpy<=2.2.6
34
34
  Requires-Dist: pyccel<=2.0.1,>=2.0
35
- Requires-Dist: mpi4py<=4.1.0
36
35
  Requires-Dist: scipy<=1.15.3
37
- Requires-Dist: h5py<=3.13.0
38
- Requires-Dist: matplotlib<=3.10.3
39
- Requires-Dist: pyyaml<=6.0.2
40
- Requires-Dist: vtk<=9.5.0
36
+ Requires-Dist: h5py<=3.14.0
37
+ Requires-Dist: matplotlib<=3.10.5
38
+ Requires-Dist: pyyaml<=6.0.3
39
+ Requires-Dist: vtk<=9.5.2
41
40
  Requires-Dist: tqdm<=4.67.1
42
41
  Requires-Dist: argcomplete<=3.6.2
43
- Requires-Dist: pytest<=8.4.1
42
+ Requires-Dist: pytest<=8.4.2
44
43
  Requires-Dist: pytest-mpi<=0.6
45
44
  Provides-Extra: phys
46
- Requires-Dist: gvec<=1.1.0,>=1.1.0; extra == "phys"
47
- Requires-Dist: desc-opt<=0.14.2; extra == "phys"
45
+ Requires-Dist: gvec<=1.2.0,>=1.1.0; extra == "phys"
46
+ Requires-Dist: desc-opt<=0.15.0; extra == "phys"
48
47
  Provides-Extra: dev
49
- Requires-Dist: notebook<=7.4.3; extra == "dev"
48
+ Requires-Dist: notebook<=7.4.7; extra == "dev"
50
49
  Requires-Dist: autopep8<=2.3.2; extra == "dev"
51
50
  Requires-Dist: isort<=6.0.1; extra == "dev"
52
51
  Requires-Dist: flake8<=7.3.0; extra == "dev"
53
- Requires-Dist: pylint<=3.3.7; extra == "dev"
52
+ Requires-Dist: pylint<=3.3.8; extra == "dev"
53
+ Requires-Dist: ssort<=0.15.0; extra == "dev"
54
54
  Requires-Dist: add-trailing-comma<=3.2.0; extra == "dev"
55
- Requires-Dist: ruff<=0.12.1,>=0.9.1; extra == "dev"
56
- Requires-Dist: pre-commit<=4.2.0; extra == "dev"
55
+ Requires-Dist: ruff<=0.13.2,>=0.9.1; extra == "dev"
56
+ Requires-Dist: pre-commit<=4.3.0; extra == "dev"
57
57
  Requires-Dist: nbstripout<=0.8.1; extra == "dev"
58
58
  Requires-Dist: tabulate<=0.9.0; extra == "dev"
59
59
  Requires-Dist: tomli-w<=1.2.0; extra == "dev"
60
+ Requires-Dist: kaleido<=1.1.0; extra == "dev"
61
+ Requires-Dist: pandas<=2.3.3; extra == "dev"
62
+ Requires-Dist: plotly<=6.3.0; extra == "dev"
63
+ Provides-Extra: mpi
64
+ Requires-Dist: mpi4py<=4.1.1; extra == "mpi"
60
65
  Provides-Extra: doc
61
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  Requires-Dist: struphy[phys]; extra == "doc"
62
67
  Requires-Dist: sphinx<=8.1.3; extra == "doc"
63
68
  Requires-Dist: sphinx-design<=0.6.1; extra == "doc"
64
- Requires-Dist: lxml_html_clean<=0.4.2; extra == "doc"
69
+ Requires-Dist: lxml_html_clean<=0.4.3; extra == "doc"
65
70
  Requires-Dist: sphinxcontrib-napoleon<=0.7; extra == "doc"
66
71
  Requires-Dist: pydata-sphinx-theme<=0.16.1; extra == "doc"
67
72
  Requires-Dist: nbsphinx<=0.9.7; extra == "doc"
@@ -69,16 +74,14 @@ Requires-Dist: m2r2<=0.3.4; extra == "doc"
69
74
  Requires-Dist: myst-parser<=4.0.1; extra == "doc"
70
75
  Requires-Dist: mistune<=0.8.4; extra == "doc"
71
76
  Requires-Dist: docutils<=0.21.2; extra == "doc"
72
- Requires-Dist: ipyparallel<=9.0.1; extra == "doc"
77
+ Requires-Dist: ipyparallel<=9.0.2; extra == "doc"
73
78
  Provides-Extra: likwid
74
79
  Requires-Dist: struphy[dev]; extra == "likwid"
75
- Requires-Dist: kaleido; extra == "likwid"
76
80
  Requires-Dist: pylikwid; extra == "likwid"
77
- Requires-Dist: pandas<=2.3.0; extra == "likwid"
78
- Requires-Dist: plotly<=6.0.1; extra == "likwid"
79
81
  Provides-Extra: all
80
82
  Requires-Dist: struphy[phys]; extra == "all"
81
83
  Requires-Dist: struphy[dev]; extra == "all"
84
+ Requires-Dist: struphy[mpi]; extra == "all"
82
85
  Requires-Dist: struphy[doc]; extra == "all"
83
86
  Dynamic: license-file
84
87
 
@@ -6,7 +6,7 @@ build-backend = "setuptools.build_meta"
6
6
 
7
7
  [project]
8
8
  name = "struphy"
9
- version = "2.4.5"
9
+ version = "2.5.0"
10
10
  readme = "README.md"
11
11
  requires-python = ">=3.10"
12
12
  authors = [
@@ -22,17 +22,16 @@ classifiers = [
22
22
  "Programming Language :: Python :: 3",
23
23
  ]
24
24
  dependencies = [
25
- "numpy<=2.2.5",
25
+ "numpy<=2.2.6",
26
26
  "pyccel<=2.0.1, >=2.0",
27
- "mpi4py<=4.1.0",
28
27
  "scipy<=1.15.3",
29
- "h5py<=3.13.0",
30
- "matplotlib<=3.10.3",
31
- "pyyaml<=6.0.2",
32
- "vtk<=9.5.0",
28
+ "h5py<=3.14.0",
29
+ "matplotlib<=3.10.5",
30
+ "pyyaml<=6.0.3",
31
+ "vtk<=9.5.2",
33
32
  "tqdm<=4.67.1",
34
33
  "argcomplete<=3.6.2",
35
- "pytest<=8.4.1",
34
+ "pytest<=8.4.2",
36
35
  "pytest-mpi<=0.6",
37
36
  ]
38
37
 
@@ -41,27 +40,34 @@ file = "LICENSE"
41
40
 
42
41
  [project.optional-dependencies]
43
42
  phys = [
44
- "gvec<=1.1.0, >=1.1.0",
45
- "desc-opt<=0.14.2",
43
+ "gvec<=1.2.0, >=1.1.0",
44
+ "desc-opt<=0.15.0",
46
45
  ]
47
46
  dev = [
48
- "notebook<=7.4.3",
47
+ "notebook<=7.4.7",
49
48
  "autopep8<=2.3.2",
50
49
  "isort<=6.0.1",
51
50
  "flake8<=7.3.0",
52
- "pylint<=3.3.7",
51
+ "pylint<=3.3.8",
52
+ "ssort<=0.15.0",
53
53
  "add-trailing-comma<=3.2.0",
54
- "ruff<=0.12.1, >=0.9.1",
55
- "pre-commit<=4.2.0",
54
+ "ruff<=0.13.2, >=0.9.1",
55
+ "pre-commit<=4.3.0",
56
56
  "nbstripout<=0.8.1",
57
57
  "tabulate<=0.9.0",
58
58
  "tomli-w<=1.2.0",
59
+ "kaleido<=1.1.0",
60
+ "pandas<=2.3.3",
61
+ "plotly<=6.3.0",
62
+ ]
63
+ mpi = [
64
+ "mpi4py<=4.1.1",
59
65
  ]
60
66
  doc = [
61
67
  "struphy[phys]",
62
68
  "sphinx<=8.1.3",
63
69
  "sphinx-design<=0.6.1",
64
- "lxml_html_clean<=0.4.2",
70
+ "lxml_html_clean<=0.4.3",
65
71
  "sphinxcontrib-napoleon<=0.7",
66
72
  "pydata-sphinx-theme<=0.16.1",
67
73
  "nbsphinx<=0.9.7",
@@ -69,18 +75,16 @@ doc = [
69
75
  "myst-parser<=4.0.1",
70
76
  "mistune<=0.8.4",
71
77
  "docutils<=0.21.2",
72
- "ipyparallel<=9.0.1",
78
+ "ipyparallel<=9.0.2",
73
79
  ]
74
80
  likwid = [
75
81
  "struphy[dev]",
76
- "kaleido",
77
82
  "pylikwid",
78
- "pandas<=2.3.0",
79
- "plotly<=6.0.1",
80
83
  ]
81
84
  all = [
82
85
  "struphy[phys]",
83
86
  "struphy[dev]",
87
+ "struphy[mpi]",
84
88
  "struphy[doc]",
85
89
  ]
86
90
 
@@ -120,7 +124,7 @@ kinetic-diagnostics = "struphy.diagnostics.console_diagn:main"
120
124
  ]
121
125
  struphy = [
122
126
  "compile_struphy.mk",
123
- "psydac-2.4.5.dev0-py3-none-any.whl",
127
+ "psydac-2.5.0.dev0-py3-none-any.whl",
124
128
  ]
125
129
 
126
130
  [tool.autopep8]