struphy 2.4.4__tar.gz → 2.5.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (379) hide show
  1. {struphy-2.4.4/src/struphy.egg-info → struphy-2.5.0}/PKG-INFO +26 -23
  2. {struphy-2.4.4 → struphy-2.5.0}/pyproject.toml +35 -30
  3. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/bsplines/bsplines.py +149 -134
  4. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/bsplines/bsplines_kernels.py +9 -7
  5. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/bsplines/evaluation_kernels_1d.py +13 -3
  6. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/bsplines/evaluation_kernels_2d.py +34 -26
  7. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/bsplines/evaluation_kernels_3d.py +2 -2
  8. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/bsplines/shapefunc_kernels.py +4 -2
  9. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/bsplines/tests/test_bsplines_kernels.py +9 -10
  10. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/bsplines/tests/test_eval_spline_mpi.py +3 -10
  11. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/compile_struphy.mk +7 -6
  12. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/console/compile.py +22 -17
  13. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/console/format.py +699 -589
  14. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/console/main.py +380 -420
  15. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/console/params.py +21 -2
  16. struphy-2.5.0/src/struphy/console/pproc.py +132 -0
  17. struphy-2.5.0/src/struphy/console/profile.py +223 -0
  18. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/console/run.py +108 -112
  19. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/console/test.py +39 -36
  20. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/console/tests/test_console.py +14 -10
  21. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/console/units.py +6 -7
  22. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/dependencies.py +32 -32
  23. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/diagnostics/console_diagn.py +1 -1
  24. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/diagnostics/continuous_spectra.py +3 -3
  25. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/diagnostics/diagn_tools.py +1 -1
  26. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/diagnostics/paraview/mesh_creator.py +2 -2
  27. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/diagnostics/paraview/vtk_writer.py +10 -9
  28. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/dispersion_relations/analytic.py +1 -1
  29. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/dispersion_relations/base.py +2 -1
  30. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/dispersion_relations/utilities.py +7 -5
  31. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/derivatives.py +62 -68
  32. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/kernels_3d.py +1 -1
  33. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/kernels_projectors_global.py +307 -227
  34. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/kernels_projectors_global_mhd.py +6 -4
  35. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/MHD_eigenvalues_cylinder_1D.py +1 -1
  36. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/control_variate.py +5 -5
  37. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/kernels_control_variate.py +33 -39
  38. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/fB_massless_control_variate.py +7 -7
  39. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/fB_massless_kernels_control_variate.py +153 -298
  40. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/fnB_massless_control_variate.py +8 -7
  41. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/fnB_massless_cv_kernel_2.py +16 -20
  42. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/fnB_massless_kernels_control_variate.py +176 -322
  43. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/massless_control_variate.py +6 -5
  44. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/massless_cvker.py +79 -163
  45. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/massless_kernels_control_variate.py +261 -499
  46. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/emw_operators.py +1 -1
  47. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/inner_products_1d.py +2 -1
  48. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/inner_products_2d.py +1 -1
  49. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/inner_products_3d.py +1 -1
  50. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/l2_error_1d.py +2 -1
  51. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/l2_error_2d.py +1 -1
  52. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/l2_error_3d.py +1 -1
  53. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/mass_matrices_3d_pre.py +28 -64
  54. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_arrays.py +6 -6
  55. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_bb_kernel.py +140 -278
  56. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_bv_kernel.py +227 -470
  57. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_massless_linear_operators.py +9 -9
  58. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_vv_kernel.py +191 -378
  59. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/mhd_operators_MF.py +1 -1
  60. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/projectors_local/pro_local/kernels_projectors_local.py +123 -265
  61. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/projectors_local/pro_local/kernels_projectors_local_mhd.py +203 -425
  62. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/projectors_local/pro_local/mhd_operators_3d_local.py +36 -36
  63. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/projectors_local/pro_local/projectors_local.py +1 -1
  64. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/projectors_local/shape_pro_local/shape_L2_projector_kernel.py +265 -540
  65. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/projectors_local/shape_pro_local/shape_function_projectors_L2.py +11 -11
  66. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/projectors_local/shape_pro_local/shape_function_projectors_local.py +11 -11
  67. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/legacy/projectors_local/shape_pro_local/shape_local_projector_kernel.py +300 -616
  68. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/mass_matrices_1d.py +100 -107
  69. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/mass_matrices_2d.py +303 -224
  70. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/mass_matrices_3d.py +341 -219
  71. struphy-2.5.0/src/struphy/eigenvalue_solvers/mhd_axisymmetric_main.py +261 -0
  72. struphy-2.5.0/src/struphy/eigenvalue_solvers/mhd_axisymmetric_pproc.py +71 -0
  73. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/mhd_operators.py +584 -587
  74. struphy-2.5.0/src/struphy/eigenvalue_solvers/mhd_operators_core.py +1917 -0
  75. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/eigenvalue_solvers/projectors_global.py +417 -535
  76. struphy-2.5.0/src/struphy/eigenvalue_solvers/spline_space.py +3242 -0
  77. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/examples/_draw_parallel.py +2 -2
  78. struphy-2.5.0/src/struphy/examples/restelli2018/callables.py +300 -0
  79. struphy-2.5.0/src/struphy/feec/banded_to_stencil_kernels.py +55 -0
  80. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/basis_projection_kernels.py +2 -2
  81. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/basis_projection_ops.py +50 -25
  82. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/linear_operators.py +89 -91
  83. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/local_projectors_kernels.py +2 -2
  84. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/mass.py +93 -16
  85. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/mass_kernels.py +318 -168
  86. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/preconditioner.py +8 -2
  87. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/projectors.py +15 -7
  88. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/psydac_derham.py +41 -33
  89. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/tests/test_basis_ops.py +5 -6
  90. struphy-2.5.0/src/struphy/feec/tests/test_derham.py +246 -0
  91. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/tests/test_eval_field.py +59 -25
  92. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/tests/test_field_init.py +15 -12
  93. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/tests/test_l2_projectors.py +4 -6
  94. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/tests/test_local_projectors.py +23 -7
  95. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/tests/test_lowdim_nel_is_1.py +2 -4
  96. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/tests/test_mass_matrices.py +8 -12
  97. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/tests/test_toarray_struphy.py +43 -36
  98. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/tests/test_tosparse_struphy.py +50 -34
  99. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/tests/xx_test_preconds.py +2 -2
  100. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/utilities.py +1 -1
  101. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/utilities_kernels.py +2 -2
  102. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/utilities_local_projectors.py +1 -2
  103. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/feec/variational_utilities.py +1 -1
  104. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/fields_background/base.py +34 -8
  105. struphy-2.5.0/src/struphy/fields_background/coil_fields/base.py +125 -0
  106. struphy-2.5.0/src/struphy/fields_background/coil_fields/coil_fields.py +86 -0
  107. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/fields_background/equils.py +448 -432
  108. struphy-2.5.0/src/struphy/fields_background/mhd_equil/gvec/run_01/CIRCTOK_State_0000_00000000.dat +37 -0
  109. struphy-2.5.0/src/struphy/fields_background/mhd_equil/gvec/run_01/CIRCTOK_State_0000_00001000.dat +37 -0
  110. struphy-2.5.0/src/struphy/fields_background/mhd_equil/gvec/run_01/parameter.ini +73 -0
  111. struphy-2.5.0/src/struphy/fields_background/mhd_equil/gvec/run_02/W7X_State_0000_00000000.dat +634 -0
  112. struphy-2.5.0/src/struphy/fields_background/mhd_equil/gvec/run_02/W7X_State_0000_00000100.dat +634 -0
  113. struphy-2.5.0/src/struphy/fields_background/mhd_equil/gvec/run_02/parameter-w7x.ini +138 -0
  114. struphy-2.5.0/src/struphy/fields_background/mhd_equil/gvec/run_03/NEO-SPITZER_State_0000_00000000.dat +64 -0
  115. struphy-2.5.0/src/struphy/fields_background/mhd_equil/gvec/run_03/NEO-SPITZER_State_0000_00003307.dat +64 -0
  116. struphy-2.5.0/src/struphy/fields_background/mhd_equil/gvec/run_03/Neo-spitzer-mirror23-well-opt-1-AR10-1.nc +0 -0
  117. struphy-2.5.0/src/struphy/fields_background/mhd_equil/gvec/run_03/parameter-fig8.ini +37 -0
  118. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/fields_background/projected_equils.py +14 -0
  119. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/fields_background/tests/test_desc_equil.py +2 -1
  120. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/fields_background/tests/test_generic_equils.py +1 -1
  121. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/fields_background/tests/test_mhd_equils.py +1 -1
  122. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/fields_background/tests/test_numerical_mhd_equil.py +1 -1
  123. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/geometry/base.py +204 -346
  124. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/geometry/domains.py +246 -545
  125. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/geometry/evaluation_kernels.py +3 -3
  126. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/geometry/mappings_kernels.py +2 -2
  127. struphy-2.5.0/src/struphy/geometry/tests/test_domain.py +923 -0
  128. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/geometry/transform_kernels.py +124 -126
  129. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/geometry/utilities.py +1 -1
  130. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/geometry/utilities_kernels.py +36 -38
  131. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/initial/eigenfunctions.py +1 -1
  132. struphy-2.5.0/src/struphy/initial/perturbations.py +2112 -0
  133. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/initial/tests/test_init_perturbations.py +10 -12
  134. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/initial/utilities.py +1 -1
  135. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/parameters.yml +5 -5
  136. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/tutorials/params_02.yml +1 -1
  137. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/tutorials/params_05a.yml +1 -1
  138. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/tutorials/params_05b.yml +1 -1
  139. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/tutorials/params_05c.yml +1 -1
  140. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/tutorials/params_05d.yml +1 -1
  141. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/tutorials/params_05e.yml +1 -1
  142. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/tutorials/params_05f.yml +1 -1
  143. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/tutorials/params_12a.yml +1 -1
  144. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/tutorials/params_12b.yml +1 -1
  145. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/verification/IsothermalEulerSPH_soundwave.yml +2 -3
  146. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/verification/LinearVlasovAmpereOneSpecies_weakLandau.yml +1 -1
  147. struphy-2.5.0/src/struphy/io/inp/verification/Maxwell_coaxial.yml +73 -0
  148. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/verification/VlasovAmpereOneSpecies_weakLandau.yml +1 -1
  149. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/output_handling.py +27 -38
  150. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/setup.py +12 -2
  151. {struphy-2.4.4/src/struphy/pic/pushing → struphy-2.5.0/src/struphy/kernel_arguments}/pusher_args_kernels.py +11 -12
  152. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/kinetic_background/base.py +1 -2
  153. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/kinetic_background/maxwellians.py +1 -2
  154. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/kinetic_background/moment_functions.py +1 -1
  155. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/kinetic_background/tests/test_base.py +17 -22
  156. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/kinetic_background/tests/test_maxwellians.py +49 -31
  157. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/linear_algebra/linalg_kernels.py +50 -50
  158. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/linear_algebra/linalg_kron.py +89 -79
  159. struphy-2.5.0/src/struphy/linear_algebra/saddle_point.py +565 -0
  160. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/linear_algebra/schur_solver.py +122 -0
  161. struphy-2.5.0/src/struphy/linear_algebra/stencil_dot_kernels.py +187 -0
  162. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/linear_algebra/stencil_transpose_kernels.py +136 -142
  163. struphy-2.5.0/src/struphy/linear_algebra/tests/test_saddle_point_propagator.py +424 -0
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  333. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/longer_examples/params_linvlasovmaxwell_streaming_weibel.yml +0 -0
  334. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/longer_examples/params_linvlasovmaxwell_weibel.yml +0 -0
  335. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/tutorials/params_03.yml +0 -0
  336. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/tutorials/params_04a.yml +0 -0
  337. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/tutorials/params_04b.yml +0 -0
  338. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/io/inp/tutorials/params_04c.yml +0 -0
  339. {struphy-2.4.4/src/struphy/kinetic_background → struphy-2.5.0/src/struphy/io/inp/verification}/__init__.py +0 -0
  340. {struphy-2.4.4/src/struphy/kinetic_background/tests → struphy-2.5.0/src/struphy/io/out}/__init__.py +0 -0
  341. {struphy-2.4.4/src/struphy/linear_algebra → struphy-2.5.0/src/struphy/kernel_arguments}/__init__.py +0 -0
  342. {struphy-2.4.4/src/struphy/feec → struphy-2.5.0/src/struphy/kernel_arguments}/local_projectors_args_kernels.py +0 -0
  343. {struphy-2.4.4/src/struphy/linear_algebra/tests → struphy-2.5.0/src/struphy/kinetic_background}/__init__.py +0 -0
  344. {struphy-2.4.4/src/struphy/models → struphy-2.5.0/src/struphy/kinetic_background/tests}/__init__.py +0 -0
  345. {struphy-2.4.4/src/struphy/models/tests → struphy-2.5.0/src/struphy/linear_algebra}/__init__.py +0 -0
  346. {struphy-2.4.4/src/struphy/ode → struphy-2.5.0/src/struphy/linear_algebra/tests}/__init__.py +0 -0
  347. {struphy-2.4.4/src/struphy/ode → struphy-2.5.0/src/struphy/models}/tests/__init__.py +0 -0
  348. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/models/tests/test_fluid_models.py +0 -0
  349. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/models/tests/test_hybrid_models.py +0 -0
  350. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/models/tests/test_kinetic_models.py +0 -0
  351. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/models/tests/test_toy_models.py +0 -0
  352. {struphy-2.4.4/src/struphy/pic → struphy-2.5.0/src/struphy/ode}/__init__.py +0 -0
  353. {struphy-2.4.4/src/struphy/pic/accumulation → struphy-2.5.0/src/struphy/ode/tests}/__init__.py +0 -0
  354. {struphy-2.4.4/src/struphy/pic/pushing → struphy-2.5.0/src/struphy/pic}/__init__.py +0 -0
  355. {struphy-2.4.4/src/struphy/pic/tests → struphy-2.5.0/src/struphy/pic/accumulation}/__init__.py +0 -0
  356. {struphy-2.4.4/src/struphy/pic/tests/test_pic_legacy_files → struphy-2.5.0/src/struphy/pic/pushing}/__init__.py +0 -0
  357. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/pic/sampling_kernels.py +0 -0
  358. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/pic/sph_smoothing_kernels.py +0 -0
  359. {struphy-2.4.4/src/struphy/polar → struphy-2.5.0/src/struphy/pic/tests}/__init__.py +0 -0
  360. {struphy-2.4.4/src/struphy/polar/tests → struphy-2.5.0/src/struphy/pic/tests/test_pic_legacy_files}/__init__.py +0 -0
  361. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/pic/tests/test_pic_legacy_files/accumulation_kernels_3d.py +0 -0
  362. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/pic/tests/test_pic_legacy_files/mappings_3d.py +0 -0
  363. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/pic/tests/test_pic_legacy_files/mappings_3d_fast.py +0 -0
  364. {struphy-2.4.4/src/struphy/post_processing → struphy-2.5.0/src/struphy/polar}/__init__.py +0 -0
  365. {struphy-2.4.4/src/struphy/post_processing/likwid → struphy-2.5.0/src/struphy/polar/tests}/__init__.py +0 -0
  366. {struphy-2.4.4/src/struphy/post_processing/orbits → struphy-2.5.0/src/struphy/post_processing}/__init__.py +0 -0
  367. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/post_processing/cprofile_analyser.py +0 -0
  368. {struphy-2.4.4/src/struphy/post_processing/tests → struphy-2.5.0/src/struphy/post_processing/likwid}/__init__.py +0 -0
  369. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/post_processing/likwid/hardware_dicts.py +0 -0
  370. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/post_processing/likwid/likwid_parser.py +0 -0
  371. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/post_processing/likwid/maxplotlylib.py +0 -0
  372. {struphy-2.4.4/src/struphy/profiling → struphy-2.5.0/src/struphy/post_processing/orbits}/__init__.py +0 -0
  373. {struphy-2.4.4/src/struphy/propagators → struphy-2.5.0/src/struphy/post_processing/tests}/__init__.py +0 -0
  374. {struphy-2.4.4/src/struphy/propagators/tests → struphy-2.5.0/src/struphy/profiling}/__init__.py +0 -0
  375. {struphy-2.4.4/src/struphy/utils → struphy-2.5.0/src/struphy/propagators/tests}/__init__.py +0 -0
  376. {struphy-2.4.4 → struphy-2.5.0}/src/struphy/utils/set_release_dependencies.py +0 -0
  377. {struphy-2.4.4 → struphy-2.5.0}/src/struphy.egg-info/dependency_links.txt +0 -0
  378. {struphy-2.4.4 → struphy-2.5.0}/src/struphy.egg-info/entry_points.txt +0 -0
  379. {struphy-2.4.4 → struphy-2.5.0}/src/struphy.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: struphy
3
- Version: 2.4.4
3
+ Version: 2.5.0
4
4
  Summary: Multi-model plasma physics package
5
5
  Author: Max Planck Institute for Plasma Physics
6
6
  Author-email: stefan.possanner@ipp.mpg.de, eric.sonnendruecker@ipp.mpg.de
@@ -30,38 +30,43 @@ Classifier: Programming Language :: Python :: 3
30
30
  Requires-Python: >=3.10
31
31
  Description-Content-Type: text/markdown
32
32
  License-File: LICENSE
33
- Requires-Dist: numpy<=2.2.2
34
- Requires-Dist: pyccel<=1.12.1,>=1.11.1
35
- Requires-Dist: mpi4py<=4.0.3
36
- Requires-Dist: scipy<=1.15.2
37
- Requires-Dist: h5py<=3.13.0
38
- Requires-Dist: matplotlib<=3.10.1
39
- Requires-Dist: pyyaml<=6.0.2
40
- Requires-Dist: vtk<=9.4.2
33
+ Requires-Dist: numpy<=2.2.6
34
+ Requires-Dist: pyccel<=2.0.1,>=2.0
35
+ Requires-Dist: scipy<=1.15.3
36
+ Requires-Dist: h5py<=3.14.0
37
+ Requires-Dist: matplotlib<=3.10.5
38
+ Requires-Dist: pyyaml<=6.0.3
39
+ Requires-Dist: vtk<=9.5.2
41
40
  Requires-Dist: tqdm<=4.67.1
42
41
  Requires-Dist: argcomplete<=3.6.2
43
- Requires-Dist: pytest<=8.3.5
42
+ Requires-Dist: pytest<=8.4.2
44
43
  Requires-Dist: pytest-mpi<=0.6
45
44
  Provides-Extra: phys
46
- Requires-Dist: gvec-to-python<=1.2.2; extra == "phys"
47
- Requires-Dist: desc-opt<=0.14.1; extra == "phys"
45
+ Requires-Dist: gvec<=1.2.0,>=1.1.0; extra == "phys"
46
+ Requires-Dist: desc-opt<=0.15.0; extra == "phys"
48
47
  Provides-Extra: dev
49
- Requires-Dist: notebook<=7.4.1; extra == "dev"
48
+ Requires-Dist: notebook<=7.4.7; extra == "dev"
50
49
  Requires-Dist: autopep8<=2.3.2; extra == "dev"
51
50
  Requires-Dist: isort<=6.0.1; extra == "dev"
52
- Requires-Dist: flake8<=7.2.0; extra == "dev"
53
- Requires-Dist: pylint<=3.3.6; extra == "dev"
54
- Requires-Dist: add-trailing-comma<=3.1.0; extra == "dev"
55
- Requires-Dist: ruff<=0.11.6,>=0.9.1; extra == "dev"
56
- Requires-Dist: pre-commit<=4.2.0; extra == "dev"
51
+ Requires-Dist: flake8<=7.3.0; extra == "dev"
52
+ Requires-Dist: pylint<=3.3.8; extra == "dev"
53
+ Requires-Dist: ssort<=0.15.0; extra == "dev"
54
+ Requires-Dist: add-trailing-comma<=3.2.0; extra == "dev"
55
+ Requires-Dist: ruff<=0.13.2,>=0.9.1; extra == "dev"
56
+ Requires-Dist: pre-commit<=4.3.0; extra == "dev"
57
57
  Requires-Dist: nbstripout<=0.8.1; extra == "dev"
58
58
  Requires-Dist: tabulate<=0.9.0; extra == "dev"
59
59
  Requires-Dist: tomli-w<=1.2.0; extra == "dev"
60
+ Requires-Dist: kaleido<=1.1.0; extra == "dev"
61
+ Requires-Dist: pandas<=2.3.3; extra == "dev"
62
+ Requires-Dist: plotly<=6.3.0; extra == "dev"
63
+ Provides-Extra: mpi
64
+ Requires-Dist: mpi4py<=4.1.1; extra == "mpi"
60
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  Provides-Extra: doc
61
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  Requires-Dist: struphy[phys]; extra == "doc"
62
67
  Requires-Dist: sphinx<=8.1.3; extra == "doc"
63
68
  Requires-Dist: sphinx-design<=0.6.1; extra == "doc"
64
- Requires-Dist: lxml_html_clean<=0.4.2; extra == "doc"
69
+ Requires-Dist: lxml_html_clean<=0.4.3; extra == "doc"
65
70
  Requires-Dist: sphinxcontrib-napoleon<=0.7; extra == "doc"
66
71
  Requires-Dist: pydata-sphinx-theme<=0.16.1; extra == "doc"
67
72
  Requires-Dist: nbsphinx<=0.9.7; extra == "doc"
@@ -69,16 +74,14 @@ Requires-Dist: m2r2<=0.3.4; extra == "doc"
69
74
  Requires-Dist: myst-parser<=4.0.1; extra == "doc"
70
75
  Requires-Dist: mistune<=0.8.4; extra == "doc"
71
76
  Requires-Dist: docutils<=0.21.2; extra == "doc"
72
- Requires-Dist: ipyparallel<=9.0.1; extra == "doc"
77
+ Requires-Dist: ipyparallel<=9.0.2; extra == "doc"
73
78
  Provides-Extra: likwid
74
79
  Requires-Dist: struphy[dev]; extra == "likwid"
75
- Requires-Dist: kaleido; extra == "likwid"
76
80
  Requires-Dist: pylikwid; extra == "likwid"
77
- Requires-Dist: pandas<=2.3.0; extra == "likwid"
78
- Requires-Dist: plotly<=6.0.1; extra == "likwid"
79
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  Provides-Extra: all
80
82
  Requires-Dist: struphy[phys]; extra == "all"
81
83
  Requires-Dist: struphy[dev]; extra == "all"
84
+ Requires-Dist: struphy[mpi]; extra == "all"
82
85
  Requires-Dist: struphy[doc]; extra == "all"
83
86
  Dynamic: license-file
84
87
 
@@ -6,7 +6,7 @@ build-backend = "setuptools.build_meta"
6
6
 
7
7
  [project]
8
8
  name = "struphy"
9
- version = "2.4.4"
9
+ version = "2.5.0"
10
10
  readme = "README.md"
11
11
  requires-python = ">=3.10"
12
12
  authors = [
@@ -22,17 +22,16 @@ classifiers = [
22
22
  "Programming Language :: Python :: 3",
23
23
  ]
24
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  dependencies = [
25
- "numpy<=2.2.2",
26
- "pyccel<=1.12.1, >=1.11.1",
27
- "mpi4py<=4.0.3",
28
- "scipy<=1.15.2",
29
- "h5py<=3.13.0",
30
- "matplotlib<=3.10.1",
31
- "pyyaml<=6.0.2",
32
- "vtk<=9.4.2",
25
+ "numpy<=2.2.6",
26
+ "pyccel<=2.0.1, >=2.0",
27
+ "scipy<=1.15.3",
28
+ "h5py<=3.14.0",
29
+ "matplotlib<=3.10.5",
30
+ "pyyaml<=6.0.3",
31
+ "vtk<=9.5.2",
33
32
  "tqdm<=4.67.1",
34
33
  "argcomplete<=3.6.2",
35
- "pytest<=8.3.5",
34
+ "pytest<=8.4.2",
36
35
  "pytest-mpi<=0.6",
37
36
  ]
38
37
 
@@ -41,27 +40,34 @@ file = "LICENSE"
41
40
 
42
41
  [project.optional-dependencies]
43
42
  phys = [
44
- "gvec-to-python<=1.2.2",
45
- "desc-opt<=0.14.1",
43
+ "gvec<=1.2.0, >=1.1.0",
44
+ "desc-opt<=0.15.0",
46
45
  ]
47
46
  dev = [
48
- "notebook<=7.4.1",
47
+ "notebook<=7.4.7",
49
48
  "autopep8<=2.3.2",
50
49
  "isort<=6.0.1",
51
- "flake8<=7.2.0",
52
- "pylint<=3.3.6",
53
- "add-trailing-comma<=3.1.0",
54
- "ruff<=0.11.6, >=0.9.1",
55
- "pre-commit<=4.2.0",
50
+ "flake8<=7.3.0",
51
+ "pylint<=3.3.8",
52
+ "ssort<=0.15.0",
53
+ "add-trailing-comma<=3.2.0",
54
+ "ruff<=0.13.2, >=0.9.1",
55
+ "pre-commit<=4.3.0",
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  "nbstripout<=0.8.1",
57
57
  "tabulate<=0.9.0",
58
58
  "tomli-w<=1.2.0",
59
+ "kaleido<=1.1.0",
60
+ "pandas<=2.3.3",
61
+ "plotly<=6.3.0",
62
+ ]
63
+ mpi = [
64
+ "mpi4py<=4.1.1",
59
65
  ]
60
66
  doc = [
61
67
  "struphy[phys]",
62
68
  "sphinx<=8.1.3",
63
69
  "sphinx-design<=0.6.1",
64
- "lxml_html_clean<=0.4.2",
70
+ "lxml_html_clean<=0.4.3",
65
71
  "sphinxcontrib-napoleon<=0.7",
66
72
  "pydata-sphinx-theme<=0.16.1",
67
73
  "nbsphinx<=0.9.7",
@@ -69,18 +75,16 @@ doc = [
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  "myst-parser<=4.0.1",
70
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  "mistune<=0.8.4",
71
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  "docutils<=0.21.2",
72
- "ipyparallel<=9.0.1",
78
+ "ipyparallel<=9.0.2",
73
79
  ]
74
80
  likwid = [
75
81
  "struphy[dev]",
76
- "kaleido",
77
82
  "pylikwid",
78
- "pandas<=2.3.0",
79
- "plotly<=6.0.1",
80
83
  ]
81
84
  all = [
82
85
  "struphy[phys]",
83
86
  "struphy[dev]",
87
+ "struphy[mpi]",
84
88
  "struphy[doc]",
85
89
  ]
86
90
 
@@ -100,12 +104,13 @@ kinetic-diagnostics = "struphy.diagnostics.console_diagn:main"
100
104
  "data/*.high",
101
105
  ]
102
106
  "struphy.fields_background.mhd_equil.gvec" = [
103
- "ellipstell_v2/newBC_E1D6_M6N6/*.dat",
104
- "ellipstell_v2/newBC_E1D6_M6N6/*.ini",
105
- "ellipstell_v2/newBC_E4D6_M6N6/*.dat",
106
- "ellipstell_v2/newBC_E4D6_M6N6/*.ini",
107
- "ellipstell_v2/oldBC_E40D5M6N6/*.dat",
108
- "ellipstell_v2/oldBC_E40D5M6N6/*.ini",
107
+ "run_01/*.dat",
108
+ "run_01/*.ini",
109
+ "run_02/*.dat",
110
+ "run_02/*.ini",
111
+ "run_03/*.dat",
112
+ "run_03/*.ini",
113
+ "run_03/*.nc",
109
114
  ]
110
115
  "struphy.io" = [
111
116
  "batch/*.sh",
@@ -119,7 +124,7 @@ kinetic-diagnostics = "struphy.diagnostics.console_diagn:main"
119
124
  ]
120
125
  struphy = [
121
126
  "compile_struphy.mk",
122
- "psydac-2.4.4.dev0-py3-none-any.whl",
127
+ "psydac-2.5.0.dev0-py3-none-any.whl",
123
128
  ]
124
129
 
125
130
  [tool.autopep8]