struphy 2.4.3__tar.gz → 2.4.5__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (364) hide show
  1. {struphy-2.4.3/src/struphy.egg-info → struphy-2.4.5}/PKG-INFO +43 -38
  2. struphy-2.4.5/pyproject.toml +163 -0
  3. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/bsplines/bsplines_kernels.py +154 -133
  4. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/bsplines/evaluation_kernels_1d.py +32 -21
  5. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/bsplines/evaluation_kernels_2d.py +134 -98
  6. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/bsplines/shapefunc_kernels.py +48 -54
  7. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/bsplines/tests/test_bsplines_kernels.py +24 -24
  8. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/compile_struphy.mk +7 -6
  9. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/console/compile.py +20 -15
  10. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/console/main.py +25 -14
  11. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/console/pproc.py +29 -21
  12. struphy-2.4.5/src/struphy/console/profile.py +223 -0
  13. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/console/run.py +8 -4
  14. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/console/tests/test_console.py +13 -8
  15. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/kernels_3d.py +1 -1
  16. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/kernels_projectors_global_mhd.py +6 -4
  17. struphy-2.4.5/src/struphy/eigenvalue_solvers/legacy/MHD_eigenvalues_cylinder_1D.py +738 -0
  18. struphy-2.4.5/src/struphy/eigenvalue_solvers/legacy/control_variates/control_variate.py +787 -0
  19. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/control_variates/kernels_control_variate.py +33 -39
  20. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/fB_massless_kernels_control_variate.py +153 -298
  21. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/fnB_massless_cv_kernel_2.py +16 -20
  22. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/fnB_massless_kernels_control_variate.py +176 -322
  23. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/massless_cvker.py +79 -163
  24. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/control_variates/kinetic_extended/massless_kernels_control_variate.py +261 -499
  25. struphy-2.4.5/src/struphy/eigenvalue_solvers/legacy/emw_operators.py +224 -0
  26. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/inner_products_1d.py +39 -43
  27. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/inner_products_2d.py +200 -125
  28. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/inner_products_3d.py +215 -112
  29. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/l2_error_1d.py +43 -46
  30. struphy-2.4.5/src/struphy/eigenvalue_solvers/legacy/l2_error_2d.py +590 -0
  31. struphy-2.4.5/src/struphy/eigenvalue_solvers/legacy/l2_error_3d.py +622 -0
  32. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/mass_matrices_3d_pre.py +216 -152
  33. struphy-2.4.5/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_arrays.py +815 -0
  34. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_bb_kernel.py +140 -278
  35. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_bv_kernel.py +227 -470
  36. struphy-2.4.5/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_massless_linear_operators.py +2616 -0
  37. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_vv_kernel.py +190 -377
  38. struphy-2.4.5/src/struphy/eigenvalue_solvers/legacy/projectors_local/pro_local/kernels_projectors_local.py +371 -0
  39. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/projectors_local/pro_local/kernels_projectors_local_mhd.py +203 -425
  40. struphy-2.4.5/src/struphy/eigenvalue_solvers/legacy/projectors_local/pro_local/mhd_operators_3d_local.py +4885 -0
  41. struphy-2.4.5/src/struphy/eigenvalue_solvers/legacy/projectors_local/pro_local/projectors_local.py +1622 -0
  42. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/projectors_local/shape_pro_local/shape_L2_projector_kernel.py +265 -540
  43. struphy-2.4.5/src/struphy/eigenvalue_solvers/legacy/projectors_local/shape_pro_local/shape_function_projectors_L2.py +972 -0
  44. struphy-2.4.5/src/struphy/eigenvalue_solvers/legacy/projectors_local/shape_pro_local/shape_function_projectors_local.py +1139 -0
  45. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/eigenvalue_solvers/legacy/projectors_local/shape_pro_local/shape_local_projector_kernel.py +300 -616
  46. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/feec/basis_projection_ops.py +3 -3
  47. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/feec/psydac_derham.py +6 -17
  48. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/feec/tests/test_l2_projectors.py +1 -1
  49. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/fields_background/base.py +19 -0
  50. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/fields_background/equils.py +156 -201
  51. struphy-2.4.5/src/struphy/fields_background/mhd_equil/gvec/run_01/CIRCTOK_State_0000_00000000.dat +37 -0
  52. struphy-2.4.5/src/struphy/fields_background/mhd_equil/gvec/run_01/CIRCTOK_State_0000_00001000.dat +37 -0
  53. struphy-2.4.5/src/struphy/fields_background/mhd_equil/gvec/run_01/parameter.ini +73 -0
  54. struphy-2.4.5/src/struphy/fields_background/mhd_equil/gvec/run_02/W7X_State_0000_00000000.dat +634 -0
  55. struphy-2.4.5/src/struphy/fields_background/mhd_equil/gvec/run_02/W7X_State_0000_00000100.dat +634 -0
  56. struphy-2.4.5/src/struphy/fields_background/mhd_equil/gvec/run_02/parameter-w7x.ini +138 -0
  57. struphy-2.4.5/src/struphy/fields_background/mhd_equil/gvec/run_03/NEO-SPITZER_State_0000_00000000.dat +64 -0
  58. struphy-2.4.5/src/struphy/fields_background/mhd_equil/gvec/run_03/NEO-SPITZER_State_0000_00003307.dat +64 -0
  59. struphy-2.4.5/src/struphy/fields_background/mhd_equil/gvec/run_03/Neo-spitzer-mirror23-well-opt-1-AR10-1.nc +0 -0
  60. struphy-2.4.5/src/struphy/fields_background/mhd_equil/gvec/run_03/parameter-fig8.ini +37 -0
  61. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/fields_background/projected_equils.py +14 -0
  62. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/geometry/base.py +17 -12
  63. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/geometry/domains.py +20 -4
  64. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/geometry/transform_kernels.py +123 -125
  65. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/inp/parameters.yml +3 -3
  66. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/inp/tutorials/params_02.yml +1 -1
  67. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/inp/tutorials/params_05a.yml +1 -1
  68. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/inp/tutorials/params_05b.yml +1 -1
  69. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/inp/tutorials/params_05c.yml +1 -1
  70. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/inp/tutorials/params_05d.yml +1 -1
  71. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/inp/tutorials/params_05e.yml +1 -1
  72. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/inp/tutorials/params_05f.yml +1 -1
  73. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/inp/tutorials/params_12a.yml +1 -1
  74. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/inp/tutorials/params_12b.yml +1 -1
  75. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/inp/verification/IsothermalEulerSPH_soundwave.yml +2 -3
  76. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/inp/verification/LinearVlasovAmpereOneSpecies_weakLandau.yml +1 -1
  77. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/inp/verification/VlasovAmpereOneSpecies_weakLandau.yml +1 -1
  78. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/io/setup.py +4 -0
  79. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/kinetic_background/tests/test_maxwellians.py +33 -23
  80. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/linear_algebra/linalg_kernels.py +50 -50
  81. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/linear_algebra/schur_solver.py +122 -0
  82. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/main.py +21 -6
  83. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/models/base.py +43 -19
  84. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/models/fluid.py +664 -17
  85. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/models/tests/util.py +9 -9
  86. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/pic/base.py +248 -87
  87. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/pic/pushing/eval_kernels_gc.py +4 -1
  88. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/pic/pushing/pusher_args_kernels.py +11 -12
  89. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/pic/pushing/pusher_kernels.py +246 -3
  90. struphy-2.4.5/src/struphy/pic/tests/test_pic_legacy_files/accumulation.py +542 -0
  91. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/pic/tests/test_pic_legacy_files/mappings_3d.py +291 -225
  92. struphy-2.4.5/src/struphy/pic/tests/test_pic_legacy_files/mappings_3d_fast.py +483 -0
  93. struphy-2.4.5/src/struphy/pic/tests/test_pic_legacy_files/pusher.py +442 -0
  94. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/pic/tests/test_pic_legacy_files/pusher_pos.py +79 -110
  95. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/pic/tests/test_pic_legacy_files/pusher_vel_2d.py +62 -127
  96. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/pic/tests/test_pic_legacy_files/pusher_vel_3d.py +140 -291
  97. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/pic/tests/test_pic_legacy_files/spline_evaluation_2d.py +197 -116
  98. struphy-2.4.5/src/struphy/pic/tests/test_pic_legacy_files/spline_evaluation_3d.py +1215 -0
  99. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/pic/tests/test_sph.py +3 -3
  100. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/pic/tests/test_tesselation.py +5 -5
  101. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/pic/utilities_kernels.py +1 -1
  102. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/orbits/orbits_kernels.py +12 -14
  103. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/post_processing_tools.py +48 -38
  104. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/propagators/propagators_fields.py +980 -251
  105. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/propagators/propagators_markers.py +27 -34
  106. struphy-2.4.3/src/struphy/psydac-2.4.3.dev0-py3-none-any.whl → struphy-2.4.5/src/struphy/psydac-2.4.5.dev0-py3-none-any.whl +0 -0
  107. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/utils/clone_config.py +2 -2
  108. struphy-2.4.5/src/struphy/utils/set_release_dependencies.py +76 -0
  109. {struphy-2.4.3 → struphy-2.4.5/src/struphy.egg-info}/PKG-INFO +43 -38
  110. {struphy-2.4.3 → struphy-2.4.5}/src/struphy.egg-info/SOURCES.txt +12 -8
  111. struphy-2.4.5/src/struphy.egg-info/requires.txt +55 -0
  112. struphy-2.4.3/pyproject.toml +0 -168
  113. struphy-2.4.3/src/struphy/console/profile.py +0 -217
  114. struphy-2.4.3/src/struphy/eigenvalue_solvers/legacy/MHD_eigenvalues_cylinder_1D.py +0 -635
  115. struphy-2.4.3/src/struphy/eigenvalue_solvers/legacy/control_variates/control_variate.py +0 -212
  116. struphy-2.4.3/src/struphy/eigenvalue_solvers/legacy/emw_operators.py +0 -201
  117. struphy-2.4.3/src/struphy/eigenvalue_solvers/legacy/l2_error_2d.py +0 -368
  118. struphy-2.4.3/src/struphy/eigenvalue_solvers/legacy/l2_error_3d.py +0 -280
  119. struphy-2.4.3/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_arrays.py +0 -265
  120. struphy-2.4.3/src/struphy/eigenvalue_solvers/legacy/massless_operators/fB_massless_linear_operators.py +0 -539
  121. struphy-2.4.3/src/struphy/eigenvalue_solvers/legacy/projectors_local/pro_local/kernels_projectors_local.py +0 -194
  122. struphy-2.4.3/src/struphy/eigenvalue_solvers/legacy/projectors_local/pro_local/mhd_operators_3d_local.py +0 -2024
  123. struphy-2.4.3/src/struphy/eigenvalue_solvers/legacy/projectors_local/pro_local/projectors_local.py +0 -1465
  124. struphy-2.4.3/src/struphy/eigenvalue_solvers/legacy/projectors_local/shape_pro_local/shape_function_projectors_L2.py +0 -448
  125. struphy-2.4.3/src/struphy/eigenvalue_solvers/legacy/projectors_local/shape_pro_local/shape_function_projectors_local.py +0 -578
  126. struphy-2.4.3/src/struphy/fields_background/mhd_equil/gvec/ellipstell_v2/newBC_E1D6_M6N6/GVEC_ELLIPSTELL_V2_State_0000_00200000.dat +0 -364
  127. struphy-2.4.3/src/struphy/fields_background/mhd_equil/gvec/ellipstell_v2/newBC_E1D6_M6N6/parameter.ini +0 -135
  128. struphy-2.4.3/src/struphy/fields_background/mhd_equil/gvec/ellipstell_v2/newBC_E4D6_M6N6/GVEC_ELLIPSTELL_V2_State_0000_00200000.dat +0 -367
  129. struphy-2.4.3/src/struphy/fields_background/mhd_equil/gvec/ellipstell_v2/newBC_E4D6_M6N6/parameter.ini +0 -136
  130. struphy-2.4.3/src/struphy/fields_background/mhd_equil/gvec/ellipstell_v2/oldBC_E40D5M6N6/GVEC_ELLIPSTELL_V2_State_0000_00200000.dat +0 -298
  131. struphy-2.4.3/src/struphy/fields_background/mhd_equil/gvec/ellipstell_v2/oldBC_E40D5M6N6/parameter.ini +0 -135
  132. struphy-2.4.3/src/struphy/fields_background/tests/test_gvec_equil.py +0 -168
  133. struphy-2.4.3/src/struphy/pic/tests/test_pic_legacy_files/accumulation.py +0 -427
  134. struphy-2.4.3/src/struphy/pic/tests/test_pic_legacy_files/mappings_3d_fast.py +0 -234
  135. struphy-2.4.3/src/struphy/pic/tests/test_pic_legacy_files/pusher.py +0 -223
  136. struphy-2.4.3/src/struphy/pic/tests/test_pic_legacy_files/spline_evaluation_3d.py +0 -752
  137. struphy-2.4.3/src/struphy.egg-info/requires.txt +0 -49
  138. {struphy-2.4.3 → struphy-2.4.5}/LICENSE +0 -0
  139. {struphy-2.4.3 → struphy-2.4.5}/README.md +0 -0
  140. {struphy-2.4.3 → struphy-2.4.5}/setup.cfg +0 -0
  141. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/__init__.py +0 -0
  142. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/bsplines/__init__.py +0 -0
  143. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/bsplines/bsplines.py +0 -0
  144. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/bsplines/evaluation_kernels_3d.py +0 -0
  145. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/bsplines/tests/__init__.py +0 -0
  146. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/bsplines/tests/test_eval_spline_mpi.py +0 -0
  147. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/conftest.py +0 -0
  148. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/console/__init__.py +0 -0
  149. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/console/format.py +0 -0
  150. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/console/likwid.py +0 -0
  151. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/console/params.py +0 -0
  152. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/console/parsers.py +0 -0
  153. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/console/test.py +0 -0
  154. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/console/units.py +0 -0
  155. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/dependencies.py +0 -0
  156. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/diagnostics/__init__.py +0 -0
  157. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/diagnostics/console_diagn.py +0 -0
  158. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/diagnostics/continuous_spectra.py +0 -0
  159. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/diagnostics/diagn_tools.py +0 -0
  160. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/diagnostics/paraview/__init__.py +0 -0
  161. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/diagnostics/paraview/mesh_creator.py +0 -0
  162. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/diagnostics/paraview/vtk_writer.py +0 -0
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  331. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/polar/extraction_operators.py +0 -0
  332. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/polar/linear_operators.py +0 -0
  333. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/polar/tests/__init__.py +0 -0
  334. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/polar/tests/test_legacy_polar_splines.py +0 -0
  335. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/polar/tests/test_polar.py +0 -0
  336. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/__init__.py +0 -0
  337. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/cprofile_analyser.py +0 -0
  338. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/likwid/__init__.py +0 -0
  339. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/likwid/hardware_dicts.py +0 -0
  340. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/likwid/likwid_parser.py +0 -0
  341. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/likwid/maxplotlylib.py +0 -0
  342. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/likwid/plot_likwidproject.py +0 -0
  343. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/likwid/plot_time_traces.py +0 -0
  344. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/likwid/roofline_plotter.py +0 -0
  345. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/orbits/__init__.py +0 -0
  346. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/orbits/orbits_tools.py +0 -0
  347. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/pproc_struphy.py +0 -0
  348. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/profile_struphy.py +0 -0
  349. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/post_processing/tests/__init__.py +0 -0
  350. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/profiling/__init__.py +0 -0
  351. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/profiling/profiling.py +0 -0
  352. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/propagators/__init__.py +0 -0
  353. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/propagators/base.py +0 -0
  354. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/propagators/propagators_coupling.py +0 -0
  355. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/propagators/tests/__init__.py +0 -0
  356. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/propagators/tests/test_gyrokinetic_poisson.py +0 -0
  357. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/propagators/tests/test_poisson.py +0 -0
  358. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/tutorials/tests/test_tutorials.py +0 -0
  359. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/utils/__init__.py +0 -0
  360. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/utils/test_clone_config.py +0 -0
  361. {struphy-2.4.3 → struphy-2.4.5}/src/struphy/utils/utils.py +0 -0
  362. {struphy-2.4.3 → struphy-2.4.5}/src/struphy.egg-info/dependency_links.txt +0 -0
  363. {struphy-2.4.3 → struphy-2.4.5}/src/struphy.egg-info/entry_points.txt +0 -0
  364. {struphy-2.4.3 → struphy-2.4.5}/src/struphy.egg-info/top_level.txt +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: struphy
3
- Version: 2.4.3
3
+ Version: 2.4.5
4
4
  Summary: Multi-model plasma physics package
5
5
  Author: Max Planck Institute for Plasma Physics
6
6
  Author-email: stefan.possanner@ipp.mpg.de, eric.sonnendruecker@ipp.mpg.de
@@ -30,51 +30,56 @@ Classifier: Programming Language :: Python :: 3
30
30
  Requires-Python: >=3.10
31
31
  Description-Content-Type: text/markdown
32
32
  License-File: LICENSE
33
- Requires-Dist: numpy
34
- Requires-Dist: pyccel>=1.11.1
35
- Requires-Dist: mpi4py
36
- Requires-Dist: scipy
37
- Requires-Dist: h5py
38
- Requires-Dist: matplotlib
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- Requires-Dist: pyyaml
40
- Requires-Dist: vtk
41
- Requires-Dist: tqdm
42
- Requires-Dist: argcomplete
43
- Requires-Dist: pytest
44
- Requires-Dist: pytest-mpi
33
+ Requires-Dist: numpy<=2.2.5
34
+ Requires-Dist: pyccel<=2.0.1,>=2.0
35
+ Requires-Dist: mpi4py<=4.1.0
36
+ Requires-Dist: scipy<=1.15.3
37
+ Requires-Dist: h5py<=3.13.0
38
+ Requires-Dist: matplotlib<=3.10.3
39
+ Requires-Dist: pyyaml<=6.0.2
40
+ Requires-Dist: vtk<=9.5.0
41
+ Requires-Dist: tqdm<=4.67.1
42
+ Requires-Dist: argcomplete<=3.6.2
43
+ Requires-Dist: pytest<=8.4.1
44
+ Requires-Dist: pytest-mpi<=0.6
45
45
  Provides-Extra: phys
46
- Requires-Dist: gvec-to-python; extra == "phys"
47
- Requires-Dist: desc-opt; extra == "phys"
46
+ Requires-Dist: gvec<=1.1.0,>=1.1.0; extra == "phys"
47
+ Requires-Dist: desc-opt<=0.14.2; extra == "phys"
48
48
  Provides-Extra: dev
49
- Requires-Dist: notebook; extra == "dev"
50
- Requires-Dist: autopep8; extra == "dev"
51
- Requires-Dist: isort; extra == "dev"
52
- Requires-Dist: flake8; extra == "dev"
53
- Requires-Dist: pylint; extra == "dev"
54
- Requires-Dist: add-trailing-comma; extra == "dev"
55
- Requires-Dist: ruff>=0.9.1; extra == "dev"
56
- Requires-Dist: pre-commit; extra == "dev"
57
- Requires-Dist: nbstripout; extra == "dev"
58
- Requires-Dist: tabulate; extra == "dev"
49
+ Requires-Dist: notebook<=7.4.3; extra == "dev"
50
+ Requires-Dist: autopep8<=2.3.2; extra == "dev"
51
+ Requires-Dist: isort<=6.0.1; extra == "dev"
52
+ Requires-Dist: flake8<=7.3.0; extra == "dev"
53
+ Requires-Dist: pylint<=3.3.7; extra == "dev"
54
+ Requires-Dist: add-trailing-comma<=3.2.0; extra == "dev"
55
+ Requires-Dist: ruff<=0.12.1,>=0.9.1; extra == "dev"
56
+ Requires-Dist: pre-commit<=4.2.0; extra == "dev"
57
+ Requires-Dist: nbstripout<=0.8.1; extra == "dev"
58
+ Requires-Dist: tabulate<=0.9.0; extra == "dev"
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+ Requires-Dist: tomli-w<=1.2.0; extra == "dev"
59
60
  Provides-Extra: doc
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61
  Requires-Dist: struphy[phys]; extra == "doc"
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- Requires-Dist: sphinx; extra == "doc"
62
- Requires-Dist: sphinx-design; extra == "doc"
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- Requires-Dist: lxml_html_clean; extra == "doc"
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- Requires-Dist: sphinxcontrib-napoleon; extra == "doc"
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- Requires-Dist: pydata-sphinx-theme; extra == "doc"
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- Requires-Dist: nbsphinx; extra == "doc"
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- Requires-Dist: m2r2; extra == "doc"
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- Requires-Dist: myst-parser; extra == "doc"
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- Requires-Dist: mistune; extra == "doc"
70
- Requires-Dist: docutils; extra == "doc"
71
- Requires-Dist: ipyparallel; extra == "doc"
62
+ Requires-Dist: sphinx<=8.1.3; extra == "doc"
63
+ Requires-Dist: sphinx-design<=0.6.1; extra == "doc"
64
+ Requires-Dist: lxml_html_clean<=0.4.2; extra == "doc"
65
+ Requires-Dist: sphinxcontrib-napoleon<=0.7; extra == "doc"
66
+ Requires-Dist: pydata-sphinx-theme<=0.16.1; extra == "doc"
67
+ Requires-Dist: nbsphinx<=0.9.7; extra == "doc"
68
+ Requires-Dist: m2r2<=0.3.4; extra == "doc"
69
+ Requires-Dist: myst-parser<=4.0.1; extra == "doc"
70
+ Requires-Dist: mistune<=0.8.4; extra == "doc"
71
+ Requires-Dist: docutils<=0.21.2; extra == "doc"
72
+ Requires-Dist: ipyparallel<=9.0.1; extra == "doc"
72
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  Provides-Extra: likwid
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  Requires-Dist: struphy[dev]; extra == "likwid"
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  Requires-Dist: kaleido; extra == "likwid"
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  Requires-Dist: pylikwid; extra == "likwid"
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- Requires-Dist: pandas; extra == "likwid"
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- Requires-Dist: plotly; extra == "likwid"
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+ Requires-Dist: pandas<=2.3.0; extra == "likwid"
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+ Requires-Dist: plotly<=6.0.1; extra == "likwid"
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+ Provides-Extra: all
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+ Requires-Dist: struphy[phys]; extra == "all"
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+ Requires-Dist: struphy[dev]; extra == "all"
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+ Requires-Dist: struphy[doc]; extra == "all"
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  Dynamic: license-file
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  # Struphy - Structure-preserving hybrid codes
@@ -0,0 +1,163 @@
1
+ [build-system]
2
+ requires = [
3
+ "setuptools>=61.0",
4
+ ]
5
+ build-backend = "setuptools.build_meta"
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+
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+ [project]
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+ name = "struphy"
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+ version = "2.4.5"
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+ readme = "README.md"
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+ requires-python = ">=3.10"
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+ authors = [
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+ { name = "Max Planck Institute for Plasma Physics" },
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+ { email = "stefan.possanner@ipp.mpg.de" },
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+ { email = "eric.sonnendruecker@ipp.mpg.de" },
16
+ ]
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+ description = "Multi-model plasma physics package"
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+ keywords = [
19
+ "plasma physics, fusion, numerical modeling, partial differential equations, energetic particles",
20
+ ]
21
+ classifiers = [
22
+ "Programming Language :: Python :: 3",
23
+ ]
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+ dependencies = [
25
+ "numpy<=2.2.5",
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+ "pyccel<=2.0.1, >=2.0",
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+ "mpi4py<=4.1.0",
28
+ "scipy<=1.15.3",
29
+ "h5py<=3.13.0",
30
+ "matplotlib<=3.10.3",
31
+ "pyyaml<=6.0.2",
32
+ "vtk<=9.5.0",
33
+ "tqdm<=4.67.1",
34
+ "argcomplete<=3.6.2",
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+ "pytest<=8.4.1",
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+ "pytest-mpi<=0.6",
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+ ]
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+
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+ [project.license]
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+ file = "LICENSE"
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+
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+ [project.optional-dependencies]
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+ phys = [
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+ "gvec<=1.1.0, >=1.1.0",
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+ "desc-opt<=0.14.2",
46
+ ]
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+ dev = [
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+ "notebook<=7.4.3",
49
+ "autopep8<=2.3.2",
50
+ "isort<=6.0.1",
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+ "flake8<=7.3.0",
52
+ "pylint<=3.3.7",
53
+ "add-trailing-comma<=3.2.0",
54
+ "ruff<=0.12.1, >=0.9.1",
55
+ "pre-commit<=4.2.0",
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+ "nbstripout<=0.8.1",
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+ "tabulate<=0.9.0",
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+ "tomli-w<=1.2.0",
59
+ ]
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+ doc = [
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+ "struphy[phys]",
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+ "sphinx<=8.1.3",
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+ "sphinx-design<=0.6.1",
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+ "lxml_html_clean<=0.4.2",
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+ "sphinxcontrib-napoleon<=0.7",
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+ "pydata-sphinx-theme<=0.16.1",
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+ "nbsphinx<=0.9.7",
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+ "m2r2<=0.3.4",
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+ "myst-parser<=4.0.1",
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+ "mistune<=0.8.4",
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+ "docutils<=0.21.2",
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+ "ipyparallel<=9.0.1",
73
+ ]
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+ likwid = [
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+ "struphy[dev]",
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+ "kaleido",
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+ "pylikwid",
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+ "pandas<=2.3.0",
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+ "plotly<=6.0.1",
80
+ ]
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+ all = [
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+ "struphy[phys]",
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+ "struphy[dev]",
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+ "struphy[doc]",
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+ ]
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+
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+ [project.urls]
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+ homepage = "https://struphy.pages.mpcdf.de/struphy/"
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+ documentation = "https://struphy.pages.mpcdf.de/struphy/"
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+ repository = "https://gitlab.mpcdf.mpg.de/struphy/struphy"
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+ changelog = "https://gitlab.mpcdf.mpg.de/struphy/struphy/-/blob/devel/CHANGELOG.md"
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+ "Bug Tracker" = "https://gitlab.mpcdf.mpg.de/struphy/struphy/-/issues"
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+
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+ [project.scripts]
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+ struphy = "struphy.console.main:struphy"
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+ kinetic-diagnostics = "struphy.diagnostics.console_diagn:main"
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+
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+ [tool.setuptools.package-data]
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+ "struphy.fields_background.mhd_equil.eqdsk" = [
100
+ "data/*.high",
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+ ]
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+ "struphy.fields_background.mhd_equil.gvec" = [
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+ "run_01/*.dat",
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+ "run_01/*.ini",
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+ "run_02/*.dat",
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+ "run_02/*.ini",
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+ "run_03/*.dat",
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+ "run_03/*.ini",
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+ "run_03/*.nc",
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+ ]
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+ "struphy.io" = [
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+ "batch/*.sh",
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+ ]
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+ "struphy.io.inp" = [
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+ "parameters.yml",
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+ "tests/*.yml",
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+ "tutorials/*.yml",
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+ "longer_examples/*.yml",
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+ "verification/*.yml",
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+ ]
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+ struphy = [
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+ "compile_struphy.mk",
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+ "psydac-2.4.5.dev0-py3-none-any.whl",
124
+ ]
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+
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+ [tool.autopep8]
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+ max_line_length = 120
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+ ignore = [
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+ "E221,E226,E203,E265,E731,E711",
130
+ ]
131
+
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+ [tool.isort]
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+ profile = "black"
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+ line_length = 120
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+ multi_line_output = 3
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+ include_trailing_comma = true
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+ force_grid_wrap = 0
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+ combine_as_imports = true
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+
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+ [tool.pylint]
141
+ max-line-length = 120
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+ quote-style = "single"
143
+
144
+ [tool.ruff]
145
+ line-length = 120
146
+
147
+ [tool.ruff.lint]
148
+ ignore = [
149
+ "E265",
150
+ "E402",
151
+ "E701",
152
+ "E722",
153
+ "E731",
154
+ "E741",
155
+ "E742",
156
+ "E743",
157
+ "E902",
158
+ "F401",
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+ "F403",
160
+ "F405",
161
+ "D211",
162
+ "D213",
163
+ ]