struphy 2.3.3__tar.gz → 2.4.1__tar.gz

{struphy-2.3.3 → struphy-2.4.1}/LICENSE

@@ -1,4 +1,4 @@
-Copyright (c) 2019-2024, Struphy developers, Max Planck Institute for Plasma Physics
+Copyright (c) 2019-2025, Struphy developers, Max Planck Institute for Plasma Physics
 
 Permission is hereby granted, free of charge, to any person obtaining a copy of this software and 
 associated documentation files (the "Software"), to deal in the Software without restriction, 

{struphy-2.3.3/src/struphy.egg-info → struphy-2.4.1}/PKG-INFO

@@ -1,10 +1,10 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.2
 Name: struphy
-Version: 2.3.3
+Version: 2.4.1
 Summary: Multi-model plasma physics package
 Author: Max Planck Institute for Plasma Physics
 Author-email: stefan.possanner@ipp.mpg.de, eric.sonnendruecker@ipp.mpg.de
-License: Copyright (c) 2019-2024, Struphy developers, Max Planck Institute for Plasma Physics
+License: Copyright (c) 2019-2025, Struphy developers, Max Planck Institute for Plasma Physics
         
         Permission is hereby granted, free of charge, to any person obtaining a copy of this software and 
         associated documentation files (the "Software"), to deal in the Software without restriction, 
@@ -27,43 +27,46 @@ Project-URL: changelog, https://gitlab.mpcdf.mpg.de/struphy/struphy/-/blob/devel
 Project-URL: Bug Tracker, https://gitlab.mpcdf.mpg.de/struphy/struphy/-/issues
 Keywords: plasma physics, fusion, numerical modeling, partial differential equations, energetic particles
 Classifier: Programming Language :: Python :: 3
-Requires-Python: <3.12,>=3.10
+Requires-Python: >=3.10
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: PyYAML==6.0.1
-Requires-Dist: add-trailing-comma==3.1.0
-Requires-Dist: argcomplete==3.4.0
-Requires-Dist: autopep8==2.3.1
-Requires-Dist: desc-opt==0.12.0
-Requires-Dist: docutils==0.21.2
-Requires-Dist: flake8==7.1.1
-Requires-Dist: gvec-to-python==1.2.2
-Requires-Dist: h5py==3.11.0
-Requires-Dist: ipyparallel==8.8.0
-Requires-Dist: isort==5.13.2
-Requires-Dist: lxml_html_clean==0.1.1
-Requires-Dist: m2r2==0.3.3.post2
-Requires-Dist: matplotlib==3.9.0
-Requires-Dist: mistune==0.8.4
-Requires-Dist: mpi4py==3.1.6
-Requires-Dist: myst-parser==3.0.1
-Requires-Dist: nbsphinx==0.9.4
-Requires-Dist: netCDF4==1.6.5
-Requires-Dist: notebook==7.2.1
-Requires-Dist: numpy==1.24.4
-Requires-Dist: pre_commit==4.0.1
-Requires-Dist: pyccel==1.12.1
-Requires-Dist: pydata-sphinx-theme==0.15.3
-Requires-Dist: pylint==3.3.1
-Requires-Dist: pytest==8.2.2
-Requires-Dist: pytest-monitor==1.6.6
-Requires-Dist: pytest-mpi==0.6
-Requires-Dist: scipy==1.13.1
-Requires-Dist: Sphinx==7.3.7
-Requires-Dist: sphinxcontrib-napoleon==0.7
-Requires-Dist: tqdm==4.66.4
-Requires-Dist: vtk==9.3.0
-Requires-Dist: wheel==0.43.0
+Requires-Dist: numpy
+Requires-Dist: pyccel>=1.11.1
+Requires-Dist: mpi4py<4
+Requires-Dist: scipy
+Requires-Dist: h5py
+Requires-Dist: matplotlib
+Requires-Dist: pyyaml
+Requires-Dist: vtk
+Requires-Dist: tqdm
+Requires-Dist: argcomplete
+Requires-Dist: gvec-to-python
+Requires-Dist: desc-opt
+Provides-Extra: test
+Requires-Dist: pytest; extra == "test"
+Requires-Dist: pytest-mpi; extra == "test"
+Provides-Extra: dev
+Requires-Dist: struphy[test]; extra == "dev"
+Requires-Dist: notebook; extra == "dev"
+Requires-Dist: autopep8; extra == "dev"
+Requires-Dist: isort; extra == "dev"
+Requires-Dist: flake8; extra == "dev"
+Requires-Dist: pylint; extra == "dev"
+Requires-Dist: add-trailing-comma; extra == "dev"
+Requires-Dist: ruff>=0.9.1; extra == "dev"
+Requires-Dist: pre-commit; extra == "dev"
+Provides-Extra: doc
+Requires-Dist: sphinx; extra == "doc"
+Requires-Dist: sphinx-design; extra == "doc"
+Requires-Dist: lxml_html_clean; extra == "doc"
+Requires-Dist: sphinxcontrib-napoleon; extra == "doc"
+Requires-Dist: pydata-sphinx-theme; extra == "doc"
+Requires-Dist: nbsphinx; extra == "doc"
+Requires-Dist: m2r2; extra == "doc"
+Requires-Dist: myst-parser; extra == "doc"
+Requires-Dist: mistune; extra == "doc"
+Requires-Dist: docutils; extra == "doc"
+Requires-Dist: ipyparallel; extra == "doc"
 
 # Struphy - Structure-preserving hybrid codes
 

struphy-2.4.1/pyproject.toml

@@ -0,0 +1,159 @@
+[build-system]
+requires = ["setuptools>=61.0"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "struphy"
+version = "2.4.1"
+readme = "README.md"
+requires-python = ">=3.10"
+license = {file = "LICENSE"}
+authors = [
+  { name = "Max Planck Institute for Plasma Physics"},
+  { email = "stefan.possanner@ipp.mpg.de"},
+  { email = "eric.sonnendruecker@ipp.mpg.de"}
+]
+description = "Multi-model plasma physics package"
+keywords = ["plasma physics, fusion, numerical modeling, partial differential equations, energetic particles"]
+classifiers = [
+    "Programming Language :: Python :: 3",
+    ]
+dependencies = [
+    'numpy',
+    'pyccel>=1.11.1',
+    'mpi4py<4',
+    'scipy',
+    'h5py',
+    'matplotlib',
+    'pyyaml',
+    'vtk',
+    'tqdm',
+    'argcomplete',
+    'gvec-to-python',
+    'desc-opt',
+]
+
+[project.optional-dependencies]
+test = [
+    'pytest',
+    'pytest-mpi',
+]
+dev = [
+    'struphy[test]',
+    'notebook',
+    'autopep8',
+    'isort',
+    'flake8',
+    'pylint',
+    'add-trailing-comma',
+    'ruff>=0.9.1',
+    'pre-commit',
+]
+doc = [
+    'sphinx',
+    'sphinx-design',
+    'lxml_html_clean',
+    'sphinxcontrib-napoleon',
+    'pydata-sphinx-theme',
+    'nbsphinx',
+    'm2r2',
+    'myst-parser',
+    'mistune',
+    'docutils',
+    'ipyparallel',
+]
+
+
+[project.urls]
+homepage = "https://struphy.pages.mpcdf.de/struphy/"
+documentation = "https://struphy.pages.mpcdf.de/struphy/"
+repository = "https://gitlab.mpcdf.mpg.de/struphy/struphy"
+changelog = "https://gitlab.mpcdf.mpg.de/struphy/struphy/-/blob/devel/CHANGELOG.md"
+"Bug Tracker" = "https://gitlab.mpcdf.mpg.de/struphy/struphy/-/issues"
+
+[project.scripts]
+struphy = "struphy.console.main:struphy"
+kinetic-diagnostics = "struphy.diagnostics.console_diagn:main"
+
+[tool.setuptools.package-data]
+'struphy.fields_background.mhd_equil.eqdsk' = [
+            'data/*.high',
+        ]
+
+'struphy.fields_background.mhd_equil.gvec' = [
+            'ellipstell_v2/newBC_E1D6_M6N6/*.dat',
+            'ellipstell_v2/newBC_E1D6_M6N6/*.ini',
+            'ellipstell_v2/newBC_E4D6_M6N6/*.dat',
+            'ellipstell_v2/newBC_E4D6_M6N6/*.ini',
+            'ellipstell_v2/oldBC_E40D5M6N6/*.dat',
+            'ellipstell_v2/oldBC_E40D5M6N6/*.ini',
+        ]
+
+'struphy.io' = ['batch/*.sh']
+
+'struphy.io.inp' = ['parameters.yml',
+                    'tests/*.yml',
+                    'tutorials/*.yml',
+                    'longer_examples/*.yml',
+                    'verification/*.yml',
+                    ]
+                    
+struphy = ['compile_struphy.mk',
+           'psydac-2.4.1-py3-none-any.whl',]
+
+[tool.autopep8]
+# Add specific settings for autopep8
+max_line_length = 120
+ignore = ["E221,E226,E203,E265,E731,E711"]
+# Descriptions of error codes: https://www.flake8rules.com/
+# E201 – Whitespace after  (, [ or {
+# E202 – Whitespace before (, [ or {
+# E221 – Multiple spaces before operator
+# E226 – Missing whitespace around arithmetic operators
+# E265 - Block comment should start with '# '
+# E266 – Too many leading # for block comment
+# E731 – Do not assign a lambda expression
+# E203 – Whitespace before : (used in slicing)
+# E711 - Ignore enforcing 'is not None' over '!= None'
+
+[tool.isort]
+# Configuration for isort
+profile = "black"  # Using the Black profile to match formatting styles
+line_length = 120
+multi_line_output = 3  # Control how isort wraps imports
+include_trailing_comma = true
+force_grid_wrap = 0
+combine_as_imports = true
+
+[tool.pylint]
+max-line-length=120
+quote-style = "single"
+
+[tool.ruff]
+line-length=120
+lint.ignore = [
+    "E265",  # Checks for block comments that lack a single space after the leading # character.
+    "E402",  # Module-level imports should be placed at the top of the file (before any other code)
+    "E701",  # Multiple statements on one line (colon)
+    # "E711",  # Comparison to `None` should be `cond is None`
+    # "E712",  # Comparison to True, False, or None should be avoided (e.g., use `if variable:` instead of `if variable == True:`)
+    # "E713",  # Convert to `not in`
+    # "E721",  # Avoid comparing types directly with `type()` (e.g., use `isinstance()` instead of `type(variable) == list`)
+    "E722",  # Do not use bare 'except'
+    "E731",  # Do not assign a lambda expression, use a def
+    "E741",  # Do not use variables named 'l', 'O', or 'I'
+    "E742",  # Do not define classes named 'l', 'O', or 'I'
+    "E743",  # Do not define functions named 'l', 'O', or 'I'
+    "E902",  # IOError
+    # "E999",  # SyntaxError
+    "F401",  # Module imported but unused
+    "F403",  # 'from module import *' used; unable to detect undefined names
+    "F405",  # Name may be undefined, or defined from star imports: module
+    # "F811",  # Redefinition of a variable that might cause ambiguity (e.g., reusing a variable name in a conflicting scope)
+    # "F821",  # Undefined name
+    # "F822",  # Undefined name in __all__
+    # "F823",  # Local variable name referenced before assignment
+    # "F841",  # Local variable name assigned to but never used
+    "D211",  # Checks for docstrings on class definitions that are preceded by a blank line
+    "D213",  # Checks for docstring summary lines that are not positioned on the second physical line of the docstring
+]