structuremappingmemory 1.1.1__tar.gz → 1.2.0__tar.gz

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Files changed (139) hide show
  1. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/PKG-INFO +5 -3
  2. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/README.md +4 -2
  3. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/pyproject.toml +4 -1
  4. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/__init__.py +1 -1
  5. structuremappingmemory-1.2.0/sma/data/ontology_catalog.json +3097 -0
  6. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/mcp.py +159 -7
  7. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/structuremappingmemory.egg-info/PKG-INFO +5 -3
  8. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/structuremappingmemory.egg-info/SOURCES.txt +1 -0
  9. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/tests/test_mcp.py +85 -2
  10. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/LICENSE +0 -0
  11. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/setup.cfg +0 -0
  12. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/__main__.py +0 -0
  13. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/agent/__init__.py +0 -0
  14. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/agent/adapter_draft.py +0 -0
  15. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/agent/api.py +0 -0
  16. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/agent/comparison.py +0 -0
  17. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/agent/llm.py +0 -0
  18. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/agent/policies.py +0 -0
  19. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/agent/service.py +0 -0
  20. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/cli.py +0 -0
  21. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/encoders/__init__.py +0 -0
  22. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/encoders/agentobs.py +0 -0
  23. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/encoders/base.py +0 -0
  24. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/encoders/code_treesitter.py +0 -0
  25. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/encoders/coverage.py +0 -0
  26. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/encoders/draft_adapter.py +0 -0
  27. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/encoders/healthcare.py +0 -0
  28. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/encoders/logs_drain.py +0 -0
  29. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/encoders/prose_tier1.py +0 -0
  30. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/encoders/structured.py +0 -0
  31. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/encoders/traces.py +0 -0
  32. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/__init__.py +0 -0
  33. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic/__init__.py +0 -0
  34. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic/arms/__init__.py +0 -0
  35. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic/arms/cyber.py +0 -0
  36. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic/arms/discovery.py +0 -0
  37. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic/arms/finance.py +0 -0
  38. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic/arms/legal.py +0 -0
  39. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic/arms/medicine.py +0 -0
  40. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic/harness.py +0 -0
  41. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic/memories.py +0 -0
  42. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic/metrics.py +0 -0
  43. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic_qa/__init__.py +0 -0
  44. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic_qa/agent.py +0 -0
  45. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic_qa/metrics.py +0 -0
  46. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/agentic_qa/pools.py +0 -0
  47. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/arn.py +0 -0
  48. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/baselines/__init__.py +0 -0
  49. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/baselines/bge_dense.py +0 -0
  50. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/baselines/bm25.py +0 -0
  51. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/baselines/dense.py +0 -0
  52. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/baselines/hipporag.py +0 -0
  53. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/baselines/hybrid_rrf.py +0 -0
  54. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/baselines/longcontext_llm.py +0 -0
  55. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/baselines/rerank.py +0 -0
  56. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/baselines/splade.py +0 -0
  57. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/baselines/wl_kernel.py +0 -0
  58. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/bugsinpy.py +0 -0
  59. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/bugsinpy_families.py +0 -0
  60. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/crossdomain.py +0 -0
  61. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/diabetes.py +0 -0
  62. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/drift_env.py +0 -0
  63. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/drift_metrics.py +0 -0
  64. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/family_labels.py +0 -0
  65. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/fraud_elliptic/__init__.py +0 -0
  66. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/fraud_elliptic/encoder.py +0 -0
  67. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/fraud_elliptic/eval.py +0 -0
  68. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/fraud_elliptic/test_encoder.py +0 -0
  69. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/ieee_cis.py +0 -0
  70. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/loghub.py +0 -0
  71. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/loghub_eval.py +0 -0
  72. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/longmemeval.py +0 -0
  73. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/__init__.py +0 -0
  74. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/base.py +0 -0
  75. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/context_only.py +0 -0
  76. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/rag_notes.py +0 -0
  77. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/shared_llm.py +0 -0
  78. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/sma_memory.py +0 -0
  79. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/zep_graphiti.py +0 -0
  80. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/metrics.py +0 -0
  81. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/ontology_bench.py +0 -0
  82. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/report.py +0 -0
  83. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/ssb_eval.py +0 -0
  84. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/ssb_generator.py +0 -0
  85. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/stats.py +0 -0
  86. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/eval/transfer_eval.py +0 -0
  87. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/index/__init__.py +0 -0
  88. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/index/ann.py +0 -0
  89. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/index/content_vectors.py +0 -0
  90. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/index/inverted.py +0 -0
  91. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/index/macfac.py +0 -0
  92. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ir/__init__.py +0 -0
  93. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ir/canon.py +0 -0
  94. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ir/schema.py +0 -0
  95. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ir/sexpr.py +0 -0
  96. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ir/signatures.py +0 -0
  97. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/match/__init__.py +0 -0
  98. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/match/conflicts.py +0 -0
  99. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/match/engine.py +0 -0
  100. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/match/explain.py +0 -0
  101. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/match/infer.py +0 -0
  102. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/match/kernels.py +0 -0
  103. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/match/mdl.py +0 -0
  104. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/match/merge_cpsat.py +0 -0
  105. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/match/merge_greedy.py +0 -0
  106. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/match/mh.py +0 -0
  107. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/match/ses.py +0 -0
  108. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/match/types.py +0 -0
  109. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/match/verifier.py +0 -0
  110. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ontology/__init__.py +0 -0
  111. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ontology/attack.py +0 -0
  112. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ontology/cpc.py +0 -0
  113. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ontology/graph.py +0 -0
  114. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ontology/loader.py +0 -0
  115. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ontology/mitre_xml.py +0 -0
  116. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ontology/mount.py +0 -0
  117. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ontology/rdf_loader.py +0 -0
  118. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ontology/registry.py +0 -0
  119. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ontology/router.py +0 -0
  120. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ontology/usgaap.py +0 -0
  121. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/sage/__init__.py +0 -0
  122. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/sage/assimilate.py +0 -0
  123. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/sage/pools.py +0 -0
  124. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/sage/probabilities.py +0 -0
  125. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/store/__init__.py +0 -0
  126. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/store/lmdb_store.py +0 -0
  127. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/store/registry.py +0 -0
  128. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/store/wal.py +0 -0
  129. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/ui/app.py +0 -0
  130. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/structuremappingmemory.egg-info/dependency_links.txt +0 -0
  131. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/structuremappingmemory.egg-info/entry_points.txt +0 -0
  132. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/structuremappingmemory.egg-info/requires.txt +0 -0
  133. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/structuremappingmemory.egg-info/top_level.txt +0 -0
  134. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/tests/test_bugsinpy_t3.py +0 -0
  135. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/tests/test_drift.py +0 -0
  136. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/tests/test_gates.py +0 -0
  137. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/tests/test_hipporag.py +0 -0
  138. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/tests/test_production_loop.py +0 -0
  139. {structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/tests/test_stats.py +0 -0
{structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: structuremappingmemory
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- Version: 1.1.1
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+ Version: 1.2.0
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  Summary: SMA-1: Structure-Mapping Agentic Memory — a structure-mapping retrieval memory that grounds language models in curated ontologies
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  Author-email: Ayaz Khan <aak2259@columbia.edu>
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  License: Apache-2.0
@@ -161,8 +161,10 @@ codex mcp add sma -- uvx structuremappingmemory # Codex CLI
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  claude mcp add sma -- uvx structuremappingmemory # Claude Code
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  ```
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- `/mcp` to confirm, then ask it to `mount_ontology` / `retrieve` / `novelty`. Full guide,
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- manifest config, and alternatives (pipx / pip): [`docs/MCP.md`](docs/MCP.md).
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+ `/mcp` to confirm. It ships a **catalog of 271 public ontologies** (23 categories — OBO
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+ Foundry science + cybersecurity, finance, legal/IP, geoscience, materials, web/library),
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+ mounted on demand: `search_catalog` / `mount_from_catalog("chebi")`, then `retrieve` /
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+ `novelty`. Full guide, manifest config, and alternatives (pipx / pip): [`docs/MCP.md`](docs/MCP.md).
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  Or for development, with the evaluation/encoder extras:
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{structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/README.md RENAMED
@@ -104,8 +104,10 @@ codex mcp add sma -- uvx structuremappingmemory # Codex CLI
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  claude mcp add sma -- uvx structuremappingmemory # Claude Code
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  ```
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- `/mcp` to confirm, then ask it to `mount_ontology` / `retrieve` / `novelty`. Full guide,
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- manifest config, and alternatives (pipx / pip): [`docs/MCP.md`](docs/MCP.md).
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+ `/mcp` to confirm. It ships a **catalog of 271 public ontologies** (23 categories — OBO
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+ Foundry science + cybersecurity, finance, legal/IP, geoscience, materials, web/library),
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+ mounted on demand: `search_catalog` / `mount_from_catalog("chebi")`, then `retrieve` /
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+ `novelty`. Full guide, manifest config, and alternatives (pipx / pip): [`docs/MCP.md`](docs/MCP.md).
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  Or for development, with the evaluation/encoder extras:
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{structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/pyproject.toml RENAMED
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  # PyPI distribution name (the import name stays `sma`); `sma` is taken on PyPI.
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  name = "structuremappingmemory"
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- version = "1.1.1"
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+ version = "1.2.0"
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  description = "SMA-1: Structure-Mapping Agentic Memory — a structure-mapping retrieval memory that grounds language models in curated ontologies"
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  readme = "README.md"
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  requires-python = ">=3.10"
@@ -78,6 +78,9 @@ structuremappingmemory = "sma.mcp:main"
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  [tool.setuptools.packages.find]
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  include = ["sma*"]
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+ [tool.setuptools.package-data]
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+ sma = ["data/*.json"]
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+
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  [tool.pytest.ini_options]
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  addopts = "-q"
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  testpaths = ["tests"]
{structuremappingmemory-1.1.1 → structuremappingmemory-1.2.0}/sma/__init__.py RENAMED
@@ -1,5 +1,5 @@
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  """SMA-1: Structure-Mapping Agentic Memory MVP."""
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  __all__ = ["__version__"]
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- __version__ = "1.1.1"
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+ __version__ = "1.2.0"
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