structuremappingmemory 1.1.0__tar.gz → 1.2.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/PKG-INFO +18 -1
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/README.md +16 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/pyproject.toml +7 -2
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/__init__.py +1 -1
- structuremappingmemory-1.2.0/sma/data/ontology_catalog.json +3097 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/mcp.py +159 -7
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/structuremappingmemory.egg-info/PKG-INFO +18 -1
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/structuremappingmemory.egg-info/SOURCES.txt +1 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/structuremappingmemory.egg-info/entry_points.txt +1 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/structuremappingmemory.egg-info/requires.txt +1 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/tests/test_mcp.py +85 -2
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/LICENSE +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/setup.cfg +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/__main__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/agent/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/agent/adapter_draft.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/agent/api.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/agent/comparison.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/agent/llm.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/agent/policies.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/agent/service.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/cli.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/encoders/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/encoders/agentobs.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/encoders/base.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/encoders/code_treesitter.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/encoders/coverage.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/encoders/draft_adapter.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/encoders/healthcare.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/encoders/logs_drain.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/encoders/prose_tier1.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/encoders/structured.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/encoders/traces.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic/arms/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic/arms/cyber.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic/arms/discovery.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic/arms/finance.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic/arms/legal.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic/arms/medicine.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic/harness.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic/memories.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic/metrics.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic_qa/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic_qa/agent.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic_qa/metrics.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/agentic_qa/pools.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/arn.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/baselines/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/baselines/bge_dense.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/baselines/bm25.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/baselines/dense.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/baselines/hipporag.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/baselines/hybrid_rrf.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/baselines/longcontext_llm.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/baselines/rerank.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/baselines/splade.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/baselines/wl_kernel.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/bugsinpy.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/bugsinpy_families.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/crossdomain.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/diabetes.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/drift_env.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/drift_metrics.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/family_labels.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/fraud_elliptic/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/fraud_elliptic/encoder.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/fraud_elliptic/eval.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/fraud_elliptic/test_encoder.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/ieee_cis.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/loghub.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/loghub_eval.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/longmemeval.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/base.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/context_only.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/rag_notes.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/shared_llm.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/sma_memory.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/memory_backends/zep_graphiti.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/metrics.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/ontology_bench.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/report.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/ssb_eval.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/ssb_generator.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/stats.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/eval/transfer_eval.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/index/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/index/ann.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/index/content_vectors.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/index/inverted.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/index/macfac.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ir/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ir/canon.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ir/schema.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ir/sexpr.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ir/signatures.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/match/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/match/conflicts.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/match/engine.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/match/explain.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/match/infer.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/match/kernels.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/match/mdl.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/match/merge_cpsat.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/match/merge_greedy.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/match/mh.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/match/ses.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/match/types.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/match/verifier.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ontology/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ontology/attack.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ontology/cpc.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ontology/graph.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ontology/loader.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ontology/mitre_xml.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ontology/mount.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ontology/rdf_loader.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ontology/registry.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ontology/router.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ontology/usgaap.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/sage/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/sage/assimilate.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/sage/pools.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/sage/probabilities.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/store/__init__.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/store/lmdb_store.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/store/registry.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/store/wal.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/sma/ui/app.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/structuremappingmemory.egg-info/dependency_links.txt +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/structuremappingmemory.egg-info/top_level.txt +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/tests/test_bugsinpy_t3.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/tests/test_drift.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/tests/test_gates.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/tests/test_hipporag.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/tests/test_production_loop.py +0 -0
- {structuremappingmemory-1.1.0 → structuremappingmemory-1.2.0}/tests/test_stats.py +0 -0
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
Metadata-Version: 2.4
|
|
2
2
|
Name: structuremappingmemory
|
|
3
|
-
Version: 1.
|
|
3
|
+
Version: 1.2.0
|
|
4
4
|
Summary: SMA-1: Structure-Mapping Agentic Memory — a structure-mapping retrieval memory that grounds language models in curated ontologies
|
|
5
5
|
Author-email: Ayaz Khan <aak2259@columbia.edu>
|
|
6
6
|
License: Apache-2.0
|
|
@@ -32,6 +32,7 @@ Requires-Dist: regex>=2024.5.15
|
|
|
32
32
|
Requires-Dist: scikit-learn>=1.5
|
|
33
33
|
Requires-Dist: typer>=0.12
|
|
34
34
|
Requires-Dist: zstandard>=0.22
|
|
35
|
+
Requires-Dist: mcp>=1.0
|
|
35
36
|
Provides-Extra: encoders
|
|
36
37
|
Requires-Dist: drain3>=0.9.11; extra == "encoders"
|
|
37
38
|
Requires-Dist: tree-sitter>=0.23; extra == "encoders"
|
|
@@ -149,6 +150,22 @@ logistic-regression baseline wins. The advantage is specific to structure.
|
|
|
149
150
|
pip install structuremappingmemory # from PyPI (import name: sma)
|
|
150
151
|
```
|
|
151
152
|
|
|
153
|
+
### Use as an MCP server (Codex, Claude Code, Claude Desktop)
|
|
154
|
+
|
|
155
|
+
SMA ships a Model Context Protocol server so an agentic LLM can mount your ontologies and
|
|
156
|
+
retrieve **structural analogs + cite-or-abstain + novelty** as tools. One command, zero
|
|
157
|
+
install (via [`uv`](https://docs.astral.sh/uv/)):
|
|
158
|
+
|
|
159
|
+
```bash
|
|
160
|
+
codex mcp add sma -- uvx structuremappingmemory # Codex CLI
|
|
161
|
+
claude mcp add sma -- uvx structuremappingmemory # Claude Code
|
|
162
|
+
```
|
|
163
|
+
|
|
164
|
+
`/mcp` to confirm. It ships a **catalog of 271 public ontologies** (23 categories — OBO
|
|
165
|
+
Foundry science + cybersecurity, finance, legal/IP, geoscience, materials, web/library),
|
|
166
|
+
mounted on demand: `search_catalog` / `mount_from_catalog("chebi")`, then `retrieve` /
|
|
167
|
+
`novelty`. Full guide, manifest config, and alternatives (pipx / pip): [`docs/MCP.md`](docs/MCP.md).
|
|
168
|
+
|
|
152
169
|
Or for development, with the evaluation/encoder extras:
|
|
153
170
|
|
|
154
171
|
```bash
|
|
@@ -93,6 +93,22 @@ logistic-regression baseline wins. The advantage is specific to structure.
|
|
|
93
93
|
pip install structuremappingmemory # from PyPI (import name: sma)
|
|
94
94
|
```
|
|
95
95
|
|
|
96
|
+
### Use as an MCP server (Codex, Claude Code, Claude Desktop)
|
|
97
|
+
|
|
98
|
+
SMA ships a Model Context Protocol server so an agentic LLM can mount your ontologies and
|
|
99
|
+
retrieve **structural analogs + cite-or-abstain + novelty** as tools. One command, zero
|
|
100
|
+
install (via [`uv`](https://docs.astral.sh/uv/)):
|
|
101
|
+
|
|
102
|
+
```bash
|
|
103
|
+
codex mcp add sma -- uvx structuremappingmemory # Codex CLI
|
|
104
|
+
claude mcp add sma -- uvx structuremappingmemory # Claude Code
|
|
105
|
+
```
|
|
106
|
+
|
|
107
|
+
`/mcp` to confirm. It ships a **catalog of 271 public ontologies** (23 categories — OBO
|
|
108
|
+
Foundry science + cybersecurity, finance, legal/IP, geoscience, materials, web/library),
|
|
109
|
+
mounted on demand: `search_catalog` / `mount_from_catalog("chebi")`, then `retrieve` /
|
|
110
|
+
`novelty`. Full guide, manifest config, and alternatives (pipx / pip): [`docs/MCP.md`](docs/MCP.md).
|
|
111
|
+
|
|
96
112
|
Or for development, with the evaluation/encoder extras:
|
|
97
113
|
|
|
98
114
|
```bash
|
|
@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
|
|
|
5
5
|
[project]
|
|
6
6
|
# PyPI distribution name (the import name stays `sma`); `sma` is taken on PyPI.
|
|
7
7
|
name = "structuremappingmemory"
|
|
8
|
-
version = "1.
|
|
8
|
+
version = "1.2.0"
|
|
9
9
|
description = "SMA-1: Structure-Mapping Agentic Memory — a structure-mapping retrieval memory that grounds language models in curated ontologies"
|
|
10
10
|
readme = "README.md"
|
|
11
11
|
requires-python = ">=3.10"
|
|
@@ -35,7 +35,8 @@ dependencies = [
|
|
|
35
35
|
"regex>=2024.5.15",
|
|
36
36
|
"scikit-learn>=1.5",
|
|
37
37
|
"typer>=0.12",
|
|
38
|
-
"zstandard>=0.22"
|
|
38
|
+
"zstandard>=0.22",
|
|
39
|
+
"mcp>=1.0"
|
|
39
40
|
]
|
|
40
41
|
|
|
41
42
|
[project.optional-dependencies]
|
|
@@ -72,10 +73,14 @@ Issues = "https://github.com/ayazkhan27/SMA-1/issues"
|
|
|
72
73
|
[project.scripts]
|
|
73
74
|
sma = "sma.cli:main"
|
|
74
75
|
sma-mcp = "sma.mcp:main"
|
|
76
|
+
structuremappingmemory = "sma.mcp:main"
|
|
75
77
|
|
|
76
78
|
[tool.setuptools.packages.find]
|
|
77
79
|
include = ["sma*"]
|
|
78
80
|
|
|
81
|
+
[tool.setuptools.package-data]
|
|
82
|
+
sma = ["data/*.json"]
|
|
83
|
+
|
|
79
84
|
[tool.pytest.ini_options]
|
|
80
85
|
addopts = "-q"
|
|
81
86
|
testpaths = ["tests"]
|