structflo-ner 0.4.0__tar.gz → 0.6.0__tar.gz

structflo_ner-0.4.0/README.md → structflo_ner-0.6.0/PKG-INFO

@@ -1,3 +1,16 @@
+Metadata-Version: 2.5
+Name: structflo-ner
+Version: 0.6.0
+Summary: Drug discovery NER wrapper around LangExtract — zero-config entity extraction for chemistry and biology.
+License: Apache-2.0
+Requires-Python: >=3.10
+Requires-Dist: langextract>=1.6.0
+Requires-Dist: pyyaml>=6.0
+Requires-Dist: rapidfuzz>=3.0
+Provides-Extra: dataframe
+Requires-Dist: pandas>=1.5; extra == 'dataframe'
+Description-Content-Type: text/markdown
+
 
 <h1 align="center">structflo.ner</h1>
 <p align="center">
@@ -334,6 +347,20 @@ df = result.to_dataframe()
 result.to_dict()
 ```
 
+Each bioactivity carries its measurement in `attributes`:
+
+| Attribute       | Example                     | Meaning                                                    |
+| --------------- | --------------------------- | ---------------------------------------------------------- |
+| `value`         | `>20.0`                     | number as reported, qualifier kept                         |
+| `unit`          | `µM`                        | unit as written                                            |
+| `assay_type`    | `CC50`                      | the endpoint (IC50, MIC90, GI50, ED90, ...)                |
+| `assay`         | `HepG2 MTT`                 | assay, cell line or read-out the value was measured in     |
+| `compound_name` | `8t`                        | compound the value belongs to                              |
+| `strain`        | `H37Rv`                     | organism or strain (`TB` profile only)                     |
+
+An attribute the text does not state comes back as the string `"None"` with
+providers that enforce a strict schema (OpenAI), or is absent otherwise.
+
 
 ## Notebooks
 

structflo_ner-0.4.0/PKG-INFO → structflo_ner-0.6.0/README.md

@@ -1,16 +1,3 @@
-Metadata-Version: 2.4
-Name: structflo-ner
-Version: 0.4.0
-Summary: Drug discovery NER wrapper around LangExtract — zero-config entity extraction for chemistry and biology.
-License: Apache-2.0
-Requires-Python: >=3.10
-Requires-Dist: langextract>=1.1.1
-Requires-Dist: pyyaml>=6.0
-Requires-Dist: rapidfuzz>=3.0
-Provides-Extra: dataframe
-Requires-Dist: pandas>=1.5; extra == 'dataframe'
-Description-Content-Type: text/markdown
-
 
 <h1 align="center">structflo.ner</h1>
 <p align="center">
@@ -347,6 +334,20 @@ df = result.to_dataframe()
 result.to_dict()
 ```
 
+Each bioactivity carries its measurement in `attributes`:
+
+| Attribute       | Example                     | Meaning                                                    |
+| --------------- | --------------------------- | ---------------------------------------------------------- |
+| `value`         | `>20.0`                     | number as reported, qualifier kept                         |
+| `unit`          | `µM`                        | unit as written                                            |
+| `assay_type`    | `CC50`                      | the endpoint (IC50, MIC90, GI50, ED90, ...)                |
+| `assay`         | `HepG2 MTT`                 | assay, cell line or read-out the value was measured in     |
+| `compound_name` | `8t`                        | compound the value belongs to                              |
+| `strain`        | `H37Rv`                     | organism or strain (`TB` profile only)                     |
+
+An attribute the text does not state comes back as the string `"None"` with
+providers that enforce a strict schema (OpenAI), or is absent otherwise.
+
 
 ## Notebooks