structflo-ner 0.4.0__tar.gz → 0.5.0__tar.gz

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Files changed (46) hide show
  1. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/PKG-INFO +3 -3
  2. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/notebooks/01_quickstart.ipynb +417 -87
  3. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/pyproject.toml +1 -1
  4. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/__init__.py +1 -1
  5. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/_entities.py +5 -1
  6. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/_examples.py +57 -0
  7. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/_prompts.py +3 -0
  8. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/extractor.py +4 -2
  9. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/README.md +34 -12
  10. structflo_ner-0.5.0/structflo/ner/fast/_loader.py +191 -0
  11. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/_matcher.py +18 -8
  12. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/extractor.py +6 -8
  13. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/tests/test_extractor.py +1 -1
  14. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/tests/test_fast.py +94 -17
  15. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/uv.lock +17 -17
  16. structflo_ner-0.4.0/.claude/settings.local.json +0 -13
  17. structflo_ner-0.4.0/structflo/ner/fast/_loader.py +0 -116
  18. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/.github/workflows/ci.yml +0 -0
  19. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/.github/workflows/publish.yml +0 -0
  20. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/.gitignore +0 -0
  21. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/Makefile +0 -0
  22. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/README.md +0 -0
  23. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/coverage.xml +0 -0
  24. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/images/fast-viz.png +0 -0
  25. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/images/local-gen-pandas.png +0 -0
  26. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/images/local-gen-viz.png +0 -0
  27. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/images/local-tb-viz.png +0 -0
  28. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/images/ner_visualization.gif +0 -0
  29. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/images/struct-flo-ner.png +0 -0
  30. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/notebooks/02_fast_ner.ipynb +0 -0
  31. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/_display.py +0 -0
  32. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/_mapping.py +0 -0
  33. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/__init__.py +0 -0
  34. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/_normalize.py +0 -0
  35. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/gazetteers/accession_number.yml +0 -0
  36. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/gazetteers/compound_name.yml +0 -0
  37. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/gazetteers/disease.yml +0 -0
  38. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/gazetteers/functional_category.yml +0 -0
  39. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/gazetteers/gene_name.yml +0 -0
  40. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/gazetteers/product.yml +0 -0
  41. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/gazetteers/screening_method.yml +0 -0
  42. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/gazetteers/strain.yml +0 -0
  43. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/fast/gazetteers/target.yml +0 -0
  44. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/structflo/ner/profiles.py +0 -0
  45. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/tests/__init__.py +0 -0
  46. {structflo_ner-0.4.0 → structflo_ner-0.5.0}/tests/test_entities.py +0 -0
{structflo_ner-0.4.0 → structflo_ner-0.5.0}/PKG-INFO RENAMED
@@ -1,10 +1,10 @@
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- Metadata-Version: 2.4
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+ Metadata-Version: 2.5
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  Name: structflo-ner
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- Version: 0.4.0
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+ Version: 0.5.0
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  Summary: Drug discovery NER wrapper around LangExtract — zero-config entity extraction for chemistry and biology.
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  License: Apache-2.0
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  Requires-Python: >=3.10
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- Requires-Dist: langextract>=1.1.1
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+ Requires-Dist: langextract>=1.6.0
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  Requires-Dist: pyyaml>=6.0
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  Requires-Dist: rapidfuzz>=3.0
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  Provides-Extra: dataframe