structflo-ner 0.2.3__tar.gz → 0.4.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- structflo_ner-0.4.0/.claude/settings.local.json +13 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/.gitignore +4 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/PKG-INFO +3 -3
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/README.md +2 -2
- structflo_ner-0.4.0/images/ner_visualization.gif +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/notebooks/01_quickstart.ipynb +201 -300
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/__init__.py +1 -1
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/_examples.py +88 -14
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/_prompts.py +11 -4
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/extractor.py +55 -17
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/tests/test_extractor.py +68 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/.github/workflows/ci.yml +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/.github/workflows/publish.yml +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/Makefile +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/coverage.xml +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/images/fast-viz.png +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/images/local-gen-pandas.png +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/images/local-gen-viz.png +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/images/local-tb-viz.png +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/images/struct-flo-ner.png +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/notebooks/02_fast_ner.ipynb +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/pyproject.toml +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/_display.py +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/_entities.py +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/_mapping.py +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/README.md +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/__init__.py +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/_loader.py +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/_matcher.py +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/_normalize.py +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/extractor.py +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/gazetteers/accession_number.yml +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/gazetteers/compound_name.yml +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/gazetteers/disease.yml +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/gazetteers/functional_category.yml +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/gazetteers/gene_name.yml +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/gazetteers/product.yml +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/gazetteers/screening_method.yml +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/gazetteers/strain.yml +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/fast/gazetteers/target.yml +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/structflo/ner/profiles.py +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/tests/__init__.py +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/tests/test_entities.py +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/tests/test_fast.py +0 -0
- {structflo_ner-0.2.3 → structflo_ner-0.4.0}/uv.lock +0 -0
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Metadata-Version: 2.4
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Name: structflo-ner
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Version: 0.
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Version: 0.4.0
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Summary: Drug discovery NER wrapper around LangExtract — zero-config entity extraction for chemistry and biology.
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License: Apache-2.0
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Requires-Python: >=3.10
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---
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**structflo.ner** is a lightweight NER library specialized for pharmaceutical and biological sciences. It uses [LangExtract](https://github.com/
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**structflo.ner** is a lightweight NER library specialized for pharmaceutical and biological sciences. It uses [LangExtract](https://github.com/google/langextract) and fuzzy based tools to deliver **zero-configuration** entity extraction.
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It ships with two extraction engines:
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Render results as color-coded, interactive HTML directly in Jupyter notebooks:
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To get a PANDAS dataframe.
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---
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**structflo.ner** is a lightweight NER library specialized for pharmaceutical and biological sciences. It uses [LangExtract](https://github.com/
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**structflo.ner** is a lightweight NER library specialized for pharmaceutical and biological sciences. It uses [LangExtract](https://github.com/google/langextract) and fuzzy based tools to deliver **zero-configuration** entity extraction.
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To get a PANDAS dataframe.
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