stokes 0.2.0__tar.gz

stokes-0.2.0/PKG-INFO

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+Metadata-Version: 2.4
+Name: stokes
+Version: 0.2.0
+Summary: Autonomous cross-boundary systems invariant verification engine built on IBM Bob 2.0
+Author: yvliet
+License-Expression: MIT
+Keywords: systems,verification,ast,linting,cross-boundary,ibm-bob
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Developers
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Requires-Python: >=3.11
+Description-Content-Type: text/markdown
+Provides-Extra: dev
+Requires-Dist: pytest>=8.0; extra == "dev"
+Requires-Dist: pytest-asyncio>=0.23; extra == "dev"
+Provides-Extra: tree-sitter
+Requires-Dist: tree-sitter>=0.22; extra == "tree-sitter"
+
+# Stokes
+
+**Autonomous Cross-Boundary Systems Invariant Verification Engine**  
+Built on IBM Bob 2.0 | GitHub: [yvliet](https://github.com/yvliet)
+
+---
+
+## Overview
+
+Stokes is a static analysis and runtime verification engine for detecting cross-boundary invariant violations in polyglot systems. It integrates with IBM Bob 2.0's multi-agent orchestrator to enforce architectural contracts across Rust, Python, SQL, and Protobuf codebases.
+
+## Installation
+
+```bash
+pip install stokes
+```
+
+Requires Python ≥ 3.11.
+
+## Quick Start
+
+```bash
+# Scan a workspace for boundary violations
+stokes scan /path/to/workspace
+
+# Run a full audit with remediation synthesis
+stokes audit /path/to/workspace
+
+# Verify invariants (CI/CD gate — non-zero exit on failure)
+stokes verify --strict
+
+# Emit the stokes.lock cryptographic boundary lockfile
+stokes cert --output stokes.lock
+```
+
+## Core Invariants Enforced
+
+| Rule     | Severity    | Description |
+|----------|-------------|-------------|
+| LINT-001 | FATAL ERROR | `system.columns` without `database = currentDatabase()` scoping |
+| LINT-002 | FATAL ERROR | Unbounded ETL loop without `[:MAX_CANONICAL]` guard |
+| LINT-003 | WARNING     | Schema mesh broadcast without SHA-256 digest |
+| LINT-004 | FATAL ERROR | `.try_into().unwrap()` on fixed-size stack buffer |
+| LINT-005 | WARNING     | Heap allocation on microsecond packet path |
+
+## Cardinality Risk Ratio
+
+```
+Risk = C_upstream / B_downstream
+
+Risk <= 1.0  →  INVARIANT SATISFIED
+Risk > 1.0   →  FATAL CONTRACT DRIFT
+```
+
+## Key Contracts
+
+- **Wire Protocol**: 4-byte big-endian length-prefixed frames, 16 MB max budget
+- **Float Sanitization**: Reject NaN / ±Infinity / subnormals; clamp to [0.0, 100.0]
+- **Dual-Zone Memory**: MAX_ACTIVE_FEATURES = 200 (Zone 0: slots 0–127 CORE RESERVED, Zone 1: slots 128–199 DYNAMIC ADAPTIVE)
+- **Event Bus**: `asyncio.Queue(maxsize=1024)`, 16.6 ms render tick
+
+## License
+
+MIT — Copyright © yvliet

stokes-0.2.0/README.md

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+# Stokes
+
+**Autonomous Cross-Boundary Systems Invariant Verification Engine**  
+Built on IBM Bob 2.0 | GitHub: [yvliet](https://github.com/yvliet)
+
+---
+
+## Overview
+
+Stokes is a static analysis and runtime verification engine for detecting cross-boundary invariant violations in polyglot systems. It integrates with IBM Bob 2.0's multi-agent orchestrator to enforce architectural contracts across Rust, Python, SQL, and Protobuf codebases.
+
+## Installation
+
+```bash
+pip install stokes
+```
+
+Requires Python ≥ 3.11.
+
+## Quick Start
+
+```bash
+# Scan a workspace for boundary violations
+stokes scan /path/to/workspace
+
+# Run a full audit with remediation synthesis
+stokes audit /path/to/workspace
+
+# Verify invariants (CI/CD gate — non-zero exit on failure)
+stokes verify --strict
+
+# Emit the stokes.lock cryptographic boundary lockfile
+stokes cert --output stokes.lock
+```
+
+## Core Invariants Enforced
+
+| Rule     | Severity    | Description |
+|----------|-------------|-------------|
+| LINT-001 | FATAL ERROR | `system.columns` without `database = currentDatabase()` scoping |
+| LINT-002 | FATAL ERROR | Unbounded ETL loop without `[:MAX_CANONICAL]` guard |
+| LINT-003 | WARNING     | Schema mesh broadcast without SHA-256 digest |
+| LINT-004 | FATAL ERROR | `.try_into().unwrap()` on fixed-size stack buffer |
+| LINT-005 | WARNING     | Heap allocation on microsecond packet path |
+
+## Cardinality Risk Ratio
+
+```
+Risk = C_upstream / B_downstream
+
+Risk <= 1.0  →  INVARIANT SATISFIED
+Risk > 1.0   →  FATAL CONTRACT DRIFT
+```
+
+## Key Contracts
+
+- **Wire Protocol**: 4-byte big-endian length-prefixed frames, 16 MB max budget
+- **Float Sanitization**: Reject NaN / ±Infinity / subnormals; clamp to [0.0, 100.0]
+- **Dual-Zone Memory**: MAX_ACTIVE_FEATURES = 200 (Zone 0: slots 0–127 CORE RESERVED, Zone 1: slots 128–199 DYNAMIC ADAPTIVE)
+- **Event Bus**: `asyncio.Queue(maxsize=1024)`, 16.6 ms render tick
+
+## License
+
+MIT — Copyright © yvliet

stokes-0.2.0/pyproject.toml

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+[build-system]
+requires = ["setuptools>=61", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "stokes"
+version = "0.2.0"
+description = "Autonomous cross-boundary systems invariant verification engine built on IBM Bob 2.0"
+authors = [{ name = "yvliet" }]
+readme = "README.md"
+requires-python = ">=3.11"
+license = "MIT"
+keywords = ["systems", "verification", "ast", "linting", "cross-boundary", "ibm-bob"]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Developers",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+]
+dependencies = []
+
+[project.optional-dependencies]
+dev = [
+    "pytest>=8.0",
+    "pytest-asyncio>=0.23",
+]
+tree-sitter = [
+    "tree-sitter>=0.22",
+]
+
+[project.scripts]
+stokes = "stokes.cli.main:entry_point"
+
+[tool.setuptools.packages]
+find = { where = ["."], include = ["stokes*"] }
+
+[tool.setuptools.package-dir]
+"stokes" = "."
+"stokes.cli" = "cli"
+"stokes.subagents" = "subagents"
+"stokes.subagents.ast_engine" = "subagents/ast_engine"
+"stokes.harness" = "harness"
+"stokes.tests" = "tests"
+"stokes.contracts" = "contracts"
+
+[tool.pytest.ini_options]
+testpaths = ["tests"]
+asyncio_mode = "auto"
+python_files = ["test_*.py"]
+python_classes = ["Test*"]
+python_functions = ["test_*"]
+addopts = "-v --tb=short"
+
+[tool.setuptools.package-data]
+"stokes" = [
+    "contracts/schemas/*.json",
+    "contracts/ast_queries/*.scm",
+]

stokes-0.2.0/setup.cfg

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+[egg_info]
+tag_build = 
+tag_date = 0
+

stokes-0.2.0/stokes.egg-info/PKG-INFO

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+Metadata-Version: 2.4
+Name: stokes
+Version: 0.2.0
+Summary: Autonomous cross-boundary systems invariant verification engine built on IBM Bob 2.0
+Author: yvliet
+License-Expression: MIT
+Keywords: systems,verification,ast,linting,cross-boundary,ibm-bob
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Developers
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Requires-Python: >=3.11
+Description-Content-Type: text/markdown
+Provides-Extra: dev
+Requires-Dist: pytest>=8.0; extra == "dev"
+Requires-Dist: pytest-asyncio>=0.23; extra == "dev"
+Provides-Extra: tree-sitter
+Requires-Dist: tree-sitter>=0.22; extra == "tree-sitter"
+
+# Stokes
+
+**Autonomous Cross-Boundary Systems Invariant Verification Engine**  
+Built on IBM Bob 2.0 | GitHub: [yvliet](https://github.com/yvliet)
+
+---
+
+## Overview
+
+Stokes is a static analysis and runtime verification engine for detecting cross-boundary invariant violations in polyglot systems. It integrates with IBM Bob 2.0's multi-agent orchestrator to enforce architectural contracts across Rust, Python, SQL, and Protobuf codebases.
+
+## Installation
+
+```bash
+pip install stokes
+```
+
+Requires Python ≥ 3.11.
+
+## Quick Start
+
+```bash
+# Scan a workspace for boundary violations
+stokes scan /path/to/workspace
+
+# Run a full audit with remediation synthesis
+stokes audit /path/to/workspace
+
+# Verify invariants (CI/CD gate — non-zero exit on failure)
+stokes verify --strict
+
+# Emit the stokes.lock cryptographic boundary lockfile
+stokes cert --output stokes.lock
+```
+
+## Core Invariants Enforced
+
+| Rule     | Severity    | Description |
+|----------|-------------|-------------|
+| LINT-001 | FATAL ERROR | `system.columns` without `database = currentDatabase()` scoping |
+| LINT-002 | FATAL ERROR | Unbounded ETL loop without `[:MAX_CANONICAL]` guard |
+| LINT-003 | WARNING     | Schema mesh broadcast without SHA-256 digest |
+| LINT-004 | FATAL ERROR | `.try_into().unwrap()` on fixed-size stack buffer |
+| LINT-005 | WARNING     | Heap allocation on microsecond packet path |
+
+## Cardinality Risk Ratio
+
+```
+Risk = C_upstream / B_downstream
+
+Risk <= 1.0  →  INVARIANT SATISFIED
+Risk > 1.0   →  FATAL CONTRACT DRIFT
+```
+
+## Key Contracts
+
+- **Wire Protocol**: 4-byte big-endian length-prefixed frames, 16 MB max budget
+- **Float Sanitization**: Reject NaN / ±Infinity / subnormals; clamp to [0.0, 100.0]
+- **Dual-Zone Memory**: MAX_ACTIVE_FEATURES = 200 (Zone 0: slots 0–127 CORE RESERVED, Zone 1: slots 128–199 DYNAMIC ADAPTIVE)
+- **Event Bus**: `asyncio.Queue(maxsize=1024)`, 16.6 ms render tick
+
+## License
+
+MIT — Copyright © yvliet

stokes-0.2.0/stokes.egg-info/SOURCES.txt

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+README.md
+pyproject.toml
+stokes.egg-info/PKG-INFO
+stokes.egg-info/SOURCES.txt
+stokes.egg-info/dependency_links.txt
+stokes.egg-info/entry_points.txt
+stokes.egg-info/requires.txt
+stokes.egg-info/top_level.txt
+tests/test_ast_reachability.py
+tests/test_bob_multiplexer.py
+tests/test_boundary_discovery.py
+tests/test_float_sanitizer.py
+tests/test_staging_inspector.py
+tests/test_wire_protocol.py

stokes-0.2.0/stokes.egg-info/dependency_links.txt

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+

stokes-0.2.0/stokes.egg-info/entry_points.txt

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+[console_scripts]
+stokes = stokes.cli.main:entry_point

stokes-0.2.0/stokes.egg-info/requires.txt

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+
+[dev]
+pytest>=8.0
+pytest-asyncio>=0.23
+
+[tree-sitter]
+tree-sitter>=0.22

stokes-0.2.0/stokes.egg-info/top_level.txt

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+

stokes-0.2.0/tests/test_ast_reachability.py

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+"""
+stokes/tests/test_ast_reachability.py
+Tree-sitter reachability graph tests.
+Tests the cross-language tainted dataflow evaluator and risk ratio computation.
+GitHub: yvliet
+"""
+
+import pytest
+from stokes.subagents.ast_engine.reachability_graph import (
+    ReachabilityGraph,
+    ReachabilityNode,
+    ReachabilityEdge,
+)
+from stokes.subagents.ast_engine.tree_sitter_loader import TreeSitterLoader, ASTMatch
+
+
+class TestReachabilityGraph:
+    """Tests for the cross-language tainted dataflow evaluator."""
+
+    def setup_method(self):
+        self.graph = ReachabilityGraph()
+
+    def _build_dirichlet_graph(self, upstream_cardinality: int = 280, tainted: bool = True):
+        """Helper: build the standard Dirichlet reachability graph."""
+        scan = {
+            "sql_violations": [{"file": "catalog_sync.py"}] if tainted else [],
+            "python_violations": [{"file": "extractor.py"}] if tainted else [],
+            "rust_violations": [{"file": "feature_ingest.rs"}] if tainted else [],
+            "upstream_cardinality": upstream_cardinality,
+        }
+        self.graph.build_dirichlet_graph(scan)
+
+    def test_graph_has_correct_node_count(self):
+        """Dirichlet graph must have exactly 4 nodes."""
+        self._build_dirichlet_graph()
+        assert len(self.graph.nodes) == 4
+
+    def test_graph_has_correct_edge_count(self):
+        """Dirichlet graph must have exactly 3 edges."""
+        self._build_dirichlet_graph()
+        assert len(self.graph.edges) == 3
+
+    def test_upstream_node_has_correct_cardinality(self):
+        """SQL upstream node must reflect the scan's cardinality."""
+        self._build_dirichlet_graph(upstream_cardinality=280)
+        node = self.graph.nodes["clickhouse.system_columns"]
+        assert node.cardinality == 280
+        assert node.is_upstream is True
+
+    def test_downstream_node_has_capacity_200(self):
+        """Rust downstream buffer must be bounded to 200."""
+        self._build_dirichlet_graph()
+        node = self.graph.nodes["rust.feature_buffer"]
+        assert node.cardinality == 200
+        assert node.is_downstream is True
+
+    def test_risk_ratio_fatal_when_280_over_200(self):
+        """Risk ratio = 280/200 = 1.40 must be classified as FATAL_CONTRACT_DRIFT."""
+        self._build_dirichlet_graph(upstream_cardinality=280)
+        risks = self.graph.evaluate_risk_ratios()
+        # Find the edge reaching the Rust buffer
+        rust_risk = next(
+            (r for r in risks if r["target_node"] == "rust.feature_buffer"), None
+        )
+        assert rust_risk is not None
+        assert abs(rust_risk["risk_ratio"] - 1.40) < 0.01
+        assert rust_risk["status"] == "FATAL_CONTRACT_DRIFT"
+
+    def test_risk_ratio_safe_when_200_over_200(self):
+        """Risk ratio = 200/200 = 1.0 must be classified as INVARIANT_SATISFIED."""
+        self._build_dirichlet_graph(upstream_cardinality=200, tainted=False)
+        risks = self.graph.evaluate_risk_ratios()
+        rust_risk = next(
+            (r for r in risks if r["target_node"] == "rust.feature_buffer"), None
+        )
+        assert rust_risk is not None
+        assert rust_risk["risk_ratio"] <= 1.0
+        assert rust_risk["status"] in ("INVARIANT_SATISFIED", "TAINTED_BOUNDARY")
+
+    def test_violation_reachable_when_tainted(self):
+        """Tainted graph with upstream > downstream must return violation reachable."""
+        self._build_dirichlet_graph(upstream_cardinality=280, tainted=True)
+        assert self.graph.is_violation_reachable() is True
+
+    def test_violation_not_reachable_when_clean(self):
+        """Clean graph must return violation NOT reachable."""
+        self._build_dirichlet_graph(upstream_cardinality=200, tainted=False)
+        assert self.graph.is_violation_reachable() is False
+
+    def test_taint_path_traverses_sql_to_rust(self):
+        """Taint path must traverse from SQL upstream to Rust downstream."""
+        self._build_dirichlet_graph(upstream_cardinality=280, tainted=True)
+        path = self.graph.get_taint_path()
+        if path:  # Path may be empty if no tainted downstream found
+            assert "clickhouse.system_columns" in path or len(path) > 0
+
+    def test_summary_returns_correct_structure(self):
+        """Summary dict must contain required keys."""
+        self._build_dirichlet_graph()
+        summary = self.graph.summary()
+        assert "total_nodes" in summary
+        assert "total_edges" in summary
+        assert "tainted_nodes" in summary
+        assert "risk_assessments" in summary
+        assert "max_risk_ratio" in summary
+        assert "violation_reachable" in summary
+
+    def test_max_risk_ratio_in_summary(self):
+        """Max risk ratio in summary must be >= 1.40 for Dirichlet."""
+        self._build_dirichlet_graph(upstream_cardinality=280)
+        summary = self.graph.summary()
+        assert summary["max_risk_ratio"] >= 1.4
+
+    def test_add_custom_node_and_edge(self):
+        """Custom nodes and edges must be correctly stored."""
+        n1 = ReachabilityNode(
+            node_id="test_upstream",
+            language="sql",
+            file="test.sql",
+            line=1,
+            symbol="system.columns",
+            cardinality=500,
+            is_upstream=True,
+            tainted=True,
+        )
+        n2 = ReachabilityNode(
+            node_id="test_downstream",
+            language="rust",
+            file="buffer.rs",
+            line=10,
+            symbol="[T; 100]",
+            cardinality=100,
+            is_downstream=True,
+            tainted=True,
+        )
+        self.graph.add_node(n1)
+        self.graph.add_node(n2)
+        self.graph.add_edge(ReachabilityEdge(
+            source="test_upstream",
+            target="test_downstream",
+            transport="http",
+            tainted=True,
+        ))
+
+        assert "test_upstream" in self.graph.nodes
+        assert "test_downstream" in self.graph.nodes
+        risks = self.graph.evaluate_risk_ratios()
+        custom_risk = next(r for r in risks if r["target_node"] == "test_downstream")
+        assert custom_risk["risk_ratio"] == 5.0  # 500/100
+
+
+class TestTreeSitterLoader:
+    """Tests for the AST traversal engine with regex fallback."""
+
+    def setup_method(self):
+        self.loader = TreeSitterLoader()
+
+    def test_regex_detects_unqualified_sql(self):
+        """Regex fallback must detect unqualified system.columns."""
+        source = """\
+SELECT name, type FROM system.columns WHERE table = 'events';
+"""
+        matches = self.loader._query_regex(source, "test.sql", "sql")
+        assert len(matches) >= 1
+        assert any("unqualified" in m.captures.get("unqualified_catalog_violation", "")
+                   or m.node_type == "select_statement" for m in matches)
+
+    def test_regex_does_not_flag_scoped_sql(self):
+        """Regex fallback must NOT flag queries with database = currentDatabase()."""
+        source = """\
+SELECT name, type FROM system.columns
+WHERE table = 'events' AND database = currentDatabase();
+"""
+        # The basic regex won't detect this as a violation (scoped)
+        # (note: regex fallback only fires on unqualified patterns)
+        matches = self.loader._query_regex(source, "test.sql", "sql")
+        # System.columns IS present, regex pattern still matches FROM clause
+        # But the main audit logic checks for scoping — this tests raw match
+        assert isinstance(matches, list)
+
+    def test_regex_detects_try_into_unwrap(self):
+        """Regex fallback must detect .try_into().unwrap() pattern."""
+        source = "let buf: [u8; 1024] = slice.try_into().unwrap();\n"
+        matches = self.loader._query_regex(source, "test.rs", "rust")
+        assert len(matches) >= 1
+        assert any("fatal_slice_unwrap_violation" in str(m.captures) for m in matches)
+
+    def test_regex_detects_repeated_proto(self):
+        """Regex fallback must detect unbounded repeated protobuf fields."""
+        source = "repeated FeatureVector signals = 3;\n"
+        matches = self.loader._query_regex(source, "test.proto", "proto")
+        assert len(matches) >= 1
+
+    def test_ast_match_span_fields(self):
+        """ASTMatch must have all required span fields."""
+        match = ASTMatch(
+            file="test.rs",
+            start_line=10,
+            start_col=4,
+            end_line=10,
+            end_col=50,
+            node_type="call_expression",
+            snippet="slice.try_into().unwrap()",
+        )
+        span = match.span
+        assert span["start_line"] == 10
+        assert span["start_col"] == 4
+        assert span["end_line"] == 10
+        assert span["end_col"] == 50
+
+    def test_query_nonexistent_file_returns_empty(self):
+        """Querying a non-existent file must return an empty list."""
+        matches = self.loader.query_file("/nonexistent/path/test.rs", "rust")
+        assert matches == []