stiminterp 0.2__tar.gz → 0.2.2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {stiminterp-0.2 → stiminterp-0.2.2}/PKG-INFO +1 -1
- {stiminterp-0.2 → stiminterp-0.2.2}/stiminterp/pipeline.py +1 -3
- {stiminterp-0.2 → stiminterp-0.2.2}/stiminterp/stim_interpolate.py +4 -2
- {stiminterp-0.2 → stiminterp-0.2.2}/stiminterp.egg-info/PKG-INFO +1 -1
- {stiminterp-0.2 → stiminterp-0.2.2}/.github/workflows/docs_build_and_deploy.yml +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/.github/workflows/test_and_deploy.yml +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/.gitignore +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/.pre-commit-config.yaml +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/LICENSE +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/MANIFEST.in +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/README.md +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/pyproject.toml +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/setup.cfg +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/stiminterp/__init__.py +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/stiminterp/load_data/custom_data_loader.py +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/stiminterp/load_data/scanimage_metadata.py +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/stiminterp/plotting_hooks/sanity_check.py +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/stiminterp.egg-info/SOURCES.txt +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/stiminterp.egg-info/dependency_links.txt +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/stiminterp.egg-info/requires.txt +0 -0
- {stiminterp-0.2 → stiminterp-0.2.2}/stiminterp.egg-info/top_level.txt +0 -0
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@@ -51,9 +51,7 @@ def run_stiminterp(
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# Save csv
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if save_stim_df:
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csv_path = out_path.with_name(
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out_path.name.replace("_corrected.tif", "_stim.csv")
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)
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csv_path = out_path.with_name(f"{tif_path.stem}_stim.csv")
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df_split.to_csv(csv_path, index=False)
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return None
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@@ -152,7 +152,10 @@ def remove_photostim_artefacts(
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# Steps 4 + 5: patch each bad TTL frame
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skipped = []
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try:
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for bad_ttl in sorted(bad_ttl_all):
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for i, bad_ttl in enumerate(sorted(bad_ttl_all)):
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print(
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f"Interpolating data loss by photostim {i}/{len(bad_ttl_all)}"
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)
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for c in range(nchan):
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bad_movie = bad_ttl * nchan + c
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@@ -197,7 +200,6 @@ def remove_photostim_artefacts(
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dinfo = np.iinfo(out.dtype)
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corrected = np.clip(flat[bad_idx], dinfo.min, dinfo.max)
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out[bad_movie] = corrected.reshape(Y, X).astype(out.dtype)
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-
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except Exception:
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_flush_close(out)
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tmp_tif.unlink(missing_ok=True)
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