stepup 1.0.0__tar.gz

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  1. stepup-1.0.0/.editorconfig +18 -0
  2. stepup-1.0.0/.gitignore +17 -0
  3. stepup-1.0.0/.pre-commit-config.yaml +39 -0
  4. stepup-1.0.0/LICENSE +674 -0
  5. stepup-1.0.0/PKG-INFO +46 -0
  6. stepup-1.0.0/README.md +12 -0
  7. stepup-1.0.0/docs/advanced_topics/amending_steps/.gitignore +3 -0
  8. stepup-1.0.0/docs/advanced_topics/amending_steps/main.sh +4 -0
  9. stepup-1.0.0/docs/advanced_topics/amending_steps/plan.py +7 -0
  10. stepup-1.0.0/docs/advanced_topics/amending_steps/stdout.txt +24 -0
  11. stepup-1.0.0/docs/advanced_topics/amending_steps/step.py +15 -0
  12. stepup-1.0.0/docs/advanced_topics/amending_steps.md +68 -0
  13. stepup-1.0.0/docs/advanced_topics/blocked_steps/.gitignore +4 -0
  14. stepup-1.0.0/docs/advanced_topics/blocked_steps/main.sh +4 -0
  15. stepup-1.0.0/docs/advanced_topics/blocked_steps/plan.py +6 -0
  16. stepup-1.0.0/docs/advanced_topics/blocked_steps/stdout.txt +16 -0
  17. stepup-1.0.0/docs/advanced_topics/blocked_steps.md +64 -0
  18. stepup-1.0.0/docs/advanced_topics/environment_variables/.gitignore +1 -0
  19. stepup-1.0.0/docs/advanced_topics/environment_variables/main.sh +4 -0
  20. stepup-1.0.0/docs/advanced_topics/environment_variables/plan.py +4 -0
  21. stepup-1.0.0/docs/advanced_topics/environment_variables/stdout.txt +14 -0
  22. stepup-1.0.0/docs/advanced_topics/environment_variables.md +41 -0
  23. stepup-1.0.0/docs/advanced_topics/here_and_root/.gitignore +2 -0
  24. stepup-1.0.0/docs/advanced_topics/here_and_root/main.sh +4 -0
  25. stepup-1.0.0/docs/advanced_topics/here_and_root/source/plan.py +6 -0
  26. stepup-1.0.0/docs/advanced_topics/here_and_root/source/sub/example.txt +1 -0
  27. stepup-1.0.0/docs/advanced_topics/here_and_root/source/sub/plan.py +7 -0
  28. stepup-1.0.0/docs/advanced_topics/here_and_root/stdout.txt +17 -0
  29. stepup-1.0.0/docs/advanced_topics/here_and_root.md +76 -0
  30. stepup-1.0.0/docs/advanced_topics/introduction.md +8 -0
  31. stepup-1.0.0/docs/advanced_topics/optional_steps/.gitignore +2 -0
  32. stepup-1.0.0/docs/advanced_topics/optional_steps/generate.py +28 -0
  33. stepup-1.0.0/docs/advanced_topics/optional_steps/main.sh +4 -0
  34. stepup-1.0.0/docs/advanced_topics/optional_steps/matplotlibrc +7 -0
  35. stepup-1.0.0/docs/advanced_topics/optional_steps/plan.py +6 -0
  36. stepup-1.0.0/docs/advanced_topics/optional_steps/plot.py +27 -0
  37. stepup-1.0.0/docs/advanced_topics/optional_steps/plot_logmap.png +0 -0
  38. stepup-1.0.0/docs/advanced_topics/optional_steps/stdout.txt +17 -0
  39. stepup-1.0.0/docs/advanced_topics/optional_steps.md +81 -0
  40. stepup-1.0.0/docs/advanced_topics/pools/.gitignore +1 -0
  41. stepup-1.0.0/docs/advanced_topics/pools/main.sh +4 -0
  42. stepup-1.0.0/docs/advanced_topics/pools/plan.py +7 -0
  43. stepup-1.0.0/docs/advanced_topics/pools/stdout.txt +27 -0
  44. stepup-1.0.0/docs/advanced_topics/pools.md +66 -0
  45. stepup-1.0.0/docs/advanced_topics/static_deferred_glob/.gitignore +1 -0
  46. stepup-1.0.0/docs/advanced_topics/static_deferred_glob/bar.txt +1 -0
  47. stepup-1.0.0/docs/advanced_topics/static_deferred_glob/foo.txt +1 -0
  48. stepup-1.0.0/docs/advanced_topics/static_deferred_glob/graph.txt +50 -0
  49. stepup-1.0.0/docs/advanced_topics/static_deferred_glob/main.sh +4 -0
  50. stepup-1.0.0/docs/advanced_topics/static_deferred_glob/plan.py +7 -0
  51. stepup-1.0.0/docs/advanced_topics/static_deferred_glob/stdout.txt +14 -0
  52. stepup-1.0.0/docs/advanced_topics/static_deferred_glob.md +54 -0
  53. stepup-1.0.0/docs/advanced_topics/static_named_glob/.gitignore +3 -0
  54. stepup-1.0.0/docs/advanced_topics/static_named_glob/ch1/sec1_1_introduction.txt +3 -0
  55. stepup-1.0.0/docs/advanced_topics/static_named_glob/ch1/sec1_2_objectives.txt +3 -0
  56. stepup-1.0.0/docs/advanced_topics/static_named_glob/ch1/unused.txt +1 -0
  57. stepup-1.0.0/docs/advanced_topics/static_named_glob/ch2/sec2_1_mathematical_requisites.txt +3 -0
  58. stepup-1.0.0/docs/advanced_topics/static_named_glob/ch2/sec2_2_theory.txt +3 -0
  59. stepup-1.0.0/docs/advanced_topics/static_named_glob/ch3/sec3_1_applications.txt +3 -0
  60. stepup-1.0.0/docs/advanced_topics/static_named_glob/ch3/sec3_2_discussion.txt +3 -0
  61. stepup-1.0.0/docs/advanced_topics/static_named_glob/ch4/sec4_1_summary.txt +3 -0
  62. stepup-1.0.0/docs/advanced_topics/static_named_glob/main.sh +4 -0
  63. stepup-1.0.0/docs/advanced_topics/static_named_glob/plan.py +19 -0
  64. stepup-1.0.0/docs/advanced_topics/static_named_glob/stdout.txt +33 -0
  65. stepup-1.0.0/docs/advanced_topics/static_named_glob.md +69 -0
  66. stepup-1.0.0/docs/advanced_topics/variable_substitution/.gitignore +1 -0
  67. stepup-1.0.0/docs/advanced_topics/variable_substitution/dst_foo.txt +4 -0
  68. stepup-1.0.0/docs/advanced_topics/variable_substitution/main.sh +4 -0
  69. stepup-1.0.0/docs/advanced_topics/variable_substitution/plan.py +5 -0
  70. stepup-1.0.0/docs/advanced_topics/variable_substitution/src_foo.txt +1 -0
  71. stepup-1.0.0/docs/advanced_topics/variable_substitution/stdout.txt +11 -0
  72. stepup-1.0.0/docs/advanced_topics/variable_substitution/step.py +8 -0
  73. stepup-1.0.0/docs/advanced_topics/variable_substitution.md +56 -0
  74. stepup-1.0.0/docs/advanced_topics/volatile_outputs/.gitignore +2 -0
  75. stepup-1.0.0/docs/advanced_topics/volatile_outputs/main.sh +4 -0
  76. stepup-1.0.0/docs/advanced_topics/volatile_outputs/plan.py +4 -0
  77. stepup-1.0.0/docs/advanced_topics/volatile_outputs/stdout.txt +11 -0
  78. stepup-1.0.0/docs/advanced_topics/volatile_outputs.md +46 -0
  79. stepup-1.0.0/docs/changelog.md +10 -0
  80. stepup-1.0.0/docs/clean_stdout.sed +2 -0
  81. stepup-1.0.0/docs/development.md +23 -0
  82. stepup-1.0.0/docs/getting_started/automatic_cleaning.md +23 -0
  83. stepup-1.0.0/docs/getting_started/copy_mkdir/.gitignore +3 -0
  84. stepup-1.0.0/docs/getting_started/copy_mkdir/main.sh +4 -0
  85. stepup-1.0.0/docs/getting_started/copy_mkdir/plan.py +6 -0
  86. stepup-1.0.0/docs/getting_started/copy_mkdir/stdout.txt +16 -0
  87. stepup-1.0.0/docs/getting_started/copy_mkdir.md +35 -0
  88. stepup-1.0.0/docs/getting_started/dependencies/.gitignore +2 -0
  89. stepup-1.0.0/docs/getting_started/dependencies/main.sh +4 -0
  90. stepup-1.0.0/docs/getting_started/dependencies/plan.py +5 -0
  91. stepup-1.0.0/docs/getting_started/dependencies/stdout.txt +17 -0
  92. stepup-1.0.0/docs/getting_started/dependencies.md +45 -0
  93. stepup-1.0.0/docs/getting_started/distributed_plans/.gitignore +1 -0
  94. stepup-1.0.0/docs/getting_started/distributed_plans/main.sh +4 -0
  95. stepup-1.0.0/docs/getting_started/distributed_plans/part1.txt +1 -0
  96. stepup-1.0.0/docs/getting_started/distributed_plans/plan.py +5 -0
  97. stepup-1.0.0/docs/getting_started/distributed_plans/stdout.txt +21 -0
  98. stepup-1.0.0/docs/getting_started/distributed_plans/sub/part2.txt +1 -0
  99. stepup-1.0.0/docs/getting_started/distributed_plans/sub/plan.py +5 -0
  100. stepup-1.0.0/docs/getting_started/distributed_plans.md +44 -0
  101. stepup-1.0.0/docs/getting_started/first_step/.gitignore +1 -0
  102. stepup-1.0.0/docs/getting_started/first_step/main.sh +5 -0
  103. stepup-1.0.0/docs/getting_started/first_step/plan.py +4 -0
  104. stepup-1.0.0/docs/getting_started/first_step/stdout1.txt +14 -0
  105. stepup-1.0.0/docs/getting_started/first_step/stdout2.txt +10 -0
  106. stepup-1.0.0/docs/getting_started/first_step.md +72 -0
  107. stepup-1.0.0/docs/getting_started/interactive_usage.md +57 -0
  108. stepup-1.0.0/docs/getting_started/introduction.md +107 -0
  109. stepup-1.0.0/docs/getting_started/no_rules/.gitignore +3 -0
  110. stepup-1.0.0/docs/getting_started/no_rules/lower1.txt +1 -0
  111. stepup-1.0.0/docs/getting_started/no_rules/lower2.txt +1 -0
  112. stepup-1.0.0/docs/getting_started/no_rules/main.sh +4 -0
  113. stepup-1.0.0/docs/getting_started/no_rules/plan.py +10 -0
  114. stepup-1.0.0/docs/getting_started/no_rules/stdout.txt +13 -0
  115. stepup-1.0.0/docs/getting_started/no_rules.md +39 -0
  116. stepup-1.0.0/docs/getting_started/processes.svg +325 -0
  117. stepup-1.0.0/docs/getting_started/script_multiple/.gitignore +1 -0
  118. stepup-1.0.0/docs/getting_started/script_multiple/ebbr.csv +696 -0
  119. stepup-1.0.0/docs/getting_started/script_multiple/ebos.csv +697 -0
  120. stepup-1.0.0/docs/getting_started/script_multiple/main.sh +4 -0
  121. stepup-1.0.0/docs/getting_started/script_multiple/matplotlibrc +7 -0
  122. stepup-1.0.0/docs/getting_started/script_multiple/plan.py +5 -0
  123. stepup-1.0.0/docs/getting_started/script_multiple/plot.py +40 -0
  124. stepup-1.0.0/docs/getting_started/script_multiple/plot_ebbr.png +0 -0
  125. stepup-1.0.0/docs/getting_started/script_multiple/plot_ebos.png +0 -0
  126. stepup-1.0.0/docs/getting_started/script_multiple/stdout.txt +15 -0
  127. stepup-1.0.0/docs/getting_started/script_multiple.md +120 -0
  128. stepup-1.0.0/docs/getting_started/script_single/.gitignore +4 -0
  129. stepup-1.0.0/docs/getting_started/script_single/config.json +4 -0
  130. stepup-1.0.0/docs/getting_started/script_single/generate.py +25 -0
  131. stepup-1.0.0/docs/getting_started/script_single/main.sh +4 -0
  132. stepup-1.0.0/docs/getting_started/script_single/plan.py +5 -0
  133. stepup-1.0.0/docs/getting_started/script_single.md +121 -0
  134. stepup-1.0.0/docs/getting_started/static_files/.gitignore +2 -0
  135. stepup-1.0.0/docs/getting_started/static_files/limerick.txt +5 -0
  136. stepup-1.0.0/docs/getting_started/static_files/main.sh +4 -0
  137. stepup-1.0.0/docs/getting_started/static_files/plan.py +5 -0
  138. stepup-1.0.0/docs/getting_started/static_files/stdout.txt +11 -0
  139. stepup-1.0.0/docs/getting_started/static_files.md +47 -0
  140. stepup-1.0.0/docs/getting_started/static_glob/.gitignore +2 -0
  141. stepup-1.0.0/docs/getting_started/static_glob/main.sh +4 -0
  142. stepup-1.0.0/docs/getting_started/static_glob/plan.py +7 -0
  143. stepup-1.0.0/docs/getting_started/static_glob/src/bar.txt +1 -0
  144. stepup-1.0.0/docs/getting_started/static_glob/src/foo.txt +1 -0
  145. stepup-1.0.0/docs/getting_started/static_glob/stdout.txt +15 -0
  146. stepup-1.0.0/docs/getting_started/static_glob.md +48 -0
  147. stepup-1.0.0/docs/getting_started/static_glob_conditional/.gitignore +2 -0
  148. stepup-1.0.0/docs/getting_started/static_glob_conditional/dataset/bigfile.txt +5 -0
  149. stepup-1.0.0/docs/getting_started/static_glob_conditional/expensive.py +11 -0
  150. stepup-1.0.0/docs/getting_started/static_glob_conditional/main.sh +7 -0
  151. stepup-1.0.0/docs/getting_started/static_glob_conditional/plan.py +14 -0
  152. stepup-1.0.0/docs/getting_started/static_glob_conditional/stdout1.txt +16 -0
  153. stepup-1.0.0/docs/getting_started/static_glob_conditional/stdout2.txt +11 -0
  154. stepup-1.0.0/docs/getting_started/static_glob_conditional.md +101 -0
  155. stepup-1.0.0/docs/index.md +95 -0
  156. stepup-1.0.0/docs/installation.md +22 -0
  157. stepup-1.0.0/docs/license.md +14 -0
  158. stepup-1.0.0/docs/plan.py +40 -0
  159. stepup-1.0.0/docs/reference/interactive.md +37 -0
  160. stepup-1.0.0/docs/reference/stepup.core.api.md +37 -0
  161. stepup-1.0.0/docs/reference/stepup.core.interact.md +6 -0
  162. stepup-1.0.0/mkdocs.yml +100 -0
  163. stepup-1.0.0/pyproject.toml +71 -0
  164. stepup-1.0.0/setup.cfg +4 -0
  165. stepup-1.0.0/stepup/core/__init__.py +30 -0
  166. stepup-1.0.0/stepup/core/_version.py +16 -0
  167. stepup-1.0.0/stepup/core/api.py +633 -0
  168. stepup-1.0.0/stepup/core/assoc.py +235 -0
  169. stepup-1.0.0/stepup/core/cascade.py +498 -0
  170. stepup-1.0.0/stepup/core/deferred_glob.py +86 -0
  171. stepup-1.0.0/stepup/core/director.py +455 -0
  172. stepup-1.0.0/stepup/core/exceptions.py +32 -0
  173. stepup-1.0.0/stepup/core/file.py +203 -0
  174. stepup-1.0.0/stepup/core/hash.py +392 -0
  175. stepup-1.0.0/stepup/core/interact.py +62 -0
  176. stepup-1.0.0/stepup/core/job.py +124 -0
  177. stepup-1.0.0/stepup/core/nglob.py +560 -0
  178. stepup-1.0.0/stepup/core/pytest.py +127 -0
  179. stepup-1.0.0/stepup/core/reporter.py +185 -0
  180. stepup-1.0.0/stepup/core/rpc.py +596 -0
  181. stepup-1.0.0/stepup/core/runner.py +292 -0
  182. stepup-1.0.0/stepup/core/scheduler.py +154 -0
  183. stepup-1.0.0/stepup/core/script.py +295 -0
  184. stepup-1.0.0/stepup/core/step.py +690 -0
  185. stepup-1.0.0/stepup/core/tui.py +255 -0
  186. stepup-1.0.0/stepup/core/utils.py +260 -0
  187. stepup-1.0.0/stepup/core/watcher.py +75 -0
  188. stepup-1.0.0/stepup/core/worker.py +518 -0
  189. stepup-1.0.0/stepup/core/workflow.py +759 -0
  190. stepup-1.0.0/stepup.egg-info/PKG-INFO +46 -0
  191. stepup-1.0.0/stepup.egg-info/SOURCES.txt +791 -0
  192. stepup-1.0.0/stepup.egg-info/dependency_links.txt +1 -0
  193. stepup-1.0.0/stepup.egg-info/entry_points.txt +2 -0
  194. stepup-1.0.0/stepup.egg-info/requires.txt +17 -0
  195. stepup-1.0.0/stepup.egg-info/top_level.txt +1 -0
  196. stepup-1.0.0/tests/cases/README.md +34 -0
  197. stepup-1.0.0/tests/cases/amend/.gitignore +8 -0
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  768. stepup-1.0.0/tests/cases/watch_output/main.sh +39 -0
  769. stepup-1.0.0/tests/cases/watch_output/plan.py +5 -0
  770. stepup-1.0.0/tests/cases/watch_output/second.txt +1 -0
  771. stepup-1.0.0/tests/cases/watch_wanted/.gitignore +8 -0
  772. stepup-1.0.0/tests/cases/watch_wanted/README.md +1 -0
  773. stepup-1.0.0/tests/cases/watch_wanted/expected_graph_01.txt +85 -0
  774. stepup-1.0.0/tests/cases/watch_wanted/expected_graph_02.txt +75 -0
  775. stepup-1.0.0/tests/cases/watch_wanted/expected_graph_03.txt +35 -0
  776. stepup-1.0.0/tests/cases/watch_wanted/expected_stdout.txt +41 -0
  777. stepup-1.0.0/tests/cases/watch_wanted/main.sh +66 -0
  778. stepup-1.0.0/tests/cases/watch_wanted/plan_01.py +8 -0
  779. stepup-1.0.0/tests/cases/watch_wanted/plan_02.py +5 -0
  780. stepup-1.0.0/tests/conftest.py +79 -0
  781. stepup-1.0.0/tests/core_common.py +57 -0
  782. stepup-1.0.0/tests/echo_server_socket.py +36 -0
  783. stepup-1.0.0/tests/echo_server_stdio.py +34 -0
  784. stepup-1.0.0/tests/test_assoc.py +267 -0
  785. stepup-1.0.0/tests/test_basics.py +246 -0
  786. stepup-1.0.0/tests/test_cascade.py +482 -0
  787. stepup-1.0.0/tests/test_cases.py +109 -0
  788. stepup-1.0.0/tests/test_hash.py +71 -0
  789. stepup-1.0.0/tests/test_nglob.py +617 -0
  790. stepup-1.0.0/tests/test_rpc.py +248 -0
  791. stepup-1.0.0/tests/test_scheduler.py +241 -0
  792. stepup-1.0.0/tests/test_utils.py +127 -0
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stepup-1.0.0/.editorconfig ADDED
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+ # EditorConfig is awesome: https://EditorConfig.org
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+
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+ root = true
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+
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+ [*]
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+ end_of_line = lf
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+ insert_final_newline = true
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+ charset = utf-8
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+ indent_style = space
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+ indent_size = 4
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+ max_line_length = 100
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+
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+ [Makefile]
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+ indent_style = tab
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+
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+ [{*.json,*.yml,*.yaml}]
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+ indent_style = space
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+ indent_size = 2
stepup-1.0.0/.gitignore ADDED
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+ # Local dev environment
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+ .envrc
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+ .idea
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+ tmp
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+ venv/
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+ .ruff_cache
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+ .pytest_cache
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+
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+ # Python and packaging
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+ __pycache__
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+ *.egg-info
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+ dist
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+ build
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+ _version.py
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+
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+ # StepUp Core specifics
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+ docs/.stepup
stepup-1.0.0/.pre-commit-config.yaml ADDED
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+ repos:
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+ - repo: https://github.com/pre-commit/pre-commit-hooks
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+ rev: v4.5.0
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+ hooks:
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+ - id: check-added-large-files
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+ - id: check-ast
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+ - id: check-case-conflict
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+ - id: check-executables-have-shebangs
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+ - id: check-json
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+ - id: check-merge-conflict
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+ - id: check-symlinks
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+ - id: check-toml
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+ - id: check-vcs-permalinks
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+ - id: debug-statements
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+ - id: detect-private-key
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+ - id: destroyed-symlinks
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+ - id: end-of-file-fixer
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+ - id: fix-byte-order-marker
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+ - id: mixed-line-ending
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+ - id: pretty-format-json
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+ args: ["--autofix", "--no-sort-keys"]
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+ - id: trailing-whitespace
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+ - repo: https://github.com/Lucas-C/pre-commit-hooks
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+ rev: v1.5.5
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+ hooks:
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+ - id: remove-crlf
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+ - repo: https://github.com/psf/black
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+ rev: 24.3.0
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+ hooks:
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+ - id: black
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+ - repo: https://github.com/astral-sh/ruff-pre-commit
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+ rev: 'v0.3.5'
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+ hooks:
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+ - id: ruff
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+ args: ["--fix"]
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+ - repo: https://github.com/python-jsonschema/check-jsonschema
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+ rev: 0.28.1
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+ hooks:
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+ - id: check-github-workflows