stepup-queue 1.0.0__tar.gz → 1.0.1__tar.gz

{stepup_queue-1.0.0 → stepup_queue-1.0.1}/PKG-INFO

@@ -1,11 +1,13 @@
 Metadata-Version: 2.4
 Name: stepup-queue
-Version: 1.0.0
+Version: 1.0.1
 Summary: StepUp Queue integrates queued jobs into a StepUp workflow.
 Author-email: Toon Verstraelen <toon.verstraelen@ugent.be>
 License-Expression: GPL-3.0-or-later
+Project-URL: Documentation, https://reproducible-reporting.github.io/stepup-queue/
 Project-URL: Issues, https://github.com/reproducible-reporting/stepup-queue/issues
 Project-URL: Source, https://github.com/reproducible-reporting/stepup-queue/
+Project-URL: Changelog, https://reproducible-reporting.github.io/stepup-queue/changelog/
 Classifier: Development Status :: 4 - Beta
 Classifier: Environment :: Console
 Classifier: Intended Audience :: Education

{stepup_queue-1.0.0 → stepup_queue-1.0.1}/docs/changelog.md

@@ -12,7 +12,11 @@ and this project adheres to [Effort-based Versioning](https://jacobtomlinson.dev
 
 (no changes yet)
 
-## [1.0.0][] - 2025-05-11 {: #v3.0.0 }
+## [1.0.1][] - 2025-05-11 {: #v1.0.1 }
+
+This is a minor cleanup release, mainly testing the release process.
+
+## [1.0.0][] - 2025-05-11 {: #v1.0.0 }
 
 This is an initial and experimental release of StepUp Queue.
 
@@ -24,4 +28,5 @@ It was adapted to integrate well with StepUp Core 3.
 This release also features the `stepup canceljobs` tool, which was not present in Parman.
 
 [Unreleased]: https://github.com/reproducible-reporting/stepup-queue
+[1.0.1]: https://github.com/reproducible-reporting/stepup-queue/releases/tag/v1.0.1
 [1.0.0]: https://github.com/reproducible-reporting/stepup-queue/releases/tag/v1.0.0

{stepup_queue-1.0.0 → stepup_queue-1.0.1}/docs/examples/slurm/.gitignore

@@ -2,4 +2,4 @@
 dynamic?
 *.log
 *.out
-*.err
+*.err

{stepup_queue-1.0.0 → stepup_queue-1.0.1}/pyproject.toml

@@ -45,8 +45,10 @@ dev = [
 ]
 
 [project.urls]
+Documentation = "https://reproducible-reporting.github.io/stepup-queue/"
 Issues = "https://github.com/reproducible-reporting/stepup-queue/issues"
 Source = "https://github.com/reproducible-reporting/stepup-queue/"
+Changelog = "https://reproducible-reporting.github.io/stepup-queue/changelog/"
 
 [project.entry-points."stepup.actions"]
 sbatch = "stepup.queue.actions:sbatch"

{stepup_queue-1.0.0 → stepup_queue-1.0.1}/stepup/queue/canceljobs.py

@@ -19,8 +19,8 @@
 # --
 """Tool to cancel jobs."""
 
-import os
 import argparse
+import os
 
 from path import Path
 
@@ -40,7 +40,7 @@ def canceljobs_tool(args: argparse.Namespace) -> int:
             print(f"Path {path} is not a directory.")
             continue
         for job_log in path.glob("**/slurmjob.log"):
-            with open(job_log, "r") as f:
+            with open(job_log) as f:
                 lines = f.readlines()
                 if len(lines) < 2 or lines[0][:-1] != FIRST_LINE:
                     print(f"Invalid first line in {job_log}.")
@@ -49,12 +49,12 @@ def canceljobs_tool(args: argparse.Namespace) -> int:
                 print(f"Found job {job_id} on cluster {cluster} in {job_log}")
                 job_ids.setdefault(cluster, []).append(job_id)
     # Cancel 100 at a time to avoid exceeding the command line length limit.
-    for cluster, job_ids in job_ids.items():
-        while len(job_ids) > 0:
-            command = f"scancel -M {cluster} " + " ".join(job_ids[:100])
+    for cluster, cluster_job_ids in job_ids.items():
+        while len(cluster_job_ids) > 0:
+            command = f"scancel -M {cluster} " + " ".join(cluster_job_ids[:100])
             print(command)
             os.system(command)
-            job_ids[:] = job_ids[100:]
+            cluster_job_ids[:] = cluster_job_ids[100:]
 
 
 def canceljobs_subcommand(subparser: argparse.ArgumentParser) -> callable:
@@ -67,7 +67,6 @@ def canceljobs_subcommand(subparser: argparse.ArgumentParser) -> callable:
         nargs="*",
         type=Path,
         help="Paths to the jobs to cancel. Subdirectories are searched recursively. "
-         "If not specified, the current directory is used.",
+        "If not specified, the current directory is used.",
     )
     return canceljobs_tool
-

{stepup_queue-1.0.0 → stepup_queue-1.0.1}/stepup/queue/sbatch.py

@@ -178,7 +178,9 @@ def rndsleep():
 
 def submit_job(work_thread: WorkThread) -> str:
     """Submit a job with sbatch."""
-    returncode, stdout, stderr = work_thread.runsh("sbatch --parsable -o slurmjob.out -e slurmjob.err slurmjob.sh")
+    returncode, stdout, stderr = work_thread.runsh(
+        "sbatch --parsable -o slurmjob.out -e slurmjob.err slurmjob.sh"
+    )
     if returncode != 0:
         if not (stderr is None or stderr == ""):
             print(stderr)

{stepup_queue-1.0.0 → stepup_queue-1.0.1}/stepup_queue.egg-info/PKG-INFO

@@ -1,11 +1,13 @@
 Metadata-Version: 2.4
 Name: stepup-queue
-Version: 1.0.0
+Version: 1.0.1
 Summary: StepUp Queue integrates queued jobs into a StepUp workflow.
 Author-email: Toon Verstraelen <toon.verstraelen@ugent.be>
 License-Expression: GPL-3.0-or-later
+Project-URL: Documentation, https://reproducible-reporting.github.io/stepup-queue/
 Project-URL: Issues, https://github.com/reproducible-reporting/stepup-queue/issues
 Project-URL: Source, https://github.com/reproducible-reporting/stepup-queue/
+Project-URL: Changelog, https://reproducible-reporting.github.io/stepup-queue/changelog/
 Classifier: Development Status :: 4 - Beta
 Classifier: Environment :: Console
 Classifier: Intended Audience :: Education