standard-evaluator 0.1.7__tar.gz

standard_evaluator-0.1.7/.github/workflows/pages.yml

@@ -0,0 +1,56 @@
+name: Deploy to GitHub Pages
+
+on:
+  push:
+    branches: [ "main" ]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+# Allow only one concurrent deployment
+concurrency:
+  group: "pages"
+  cancel-in-progress: false
+
+jobs:
+  deploy:
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Setup Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install .[docs]
+
+      - name: Setup Pages
+        uses: actions/configure-pages@v4
+
+      - name: Build documentation
+        run: |
+          cd docs
+          python -m sphinx -b html source ./_html
+
+
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v3
+        with:
+          path: 'docs/_html'
+
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4

standard_evaluator-0.1.7/.github/workflows/publish-pypi.yml

@@ -0,0 +1,68 @@
+name: Publish to PyPI
+
+on:
+  push:
+    tags:
+      - 'v*.*.*'
+
+jobs:
+
+  test_publish:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+      - run: pip install build
+      - run: python -m build
+      - name: Check if TEST_PYPI_API_TOKEN is set
+        run: |
+          if [ -z "$TEST_PYPI_API_TOKEN" ]; then
+            echo "❌ TEST_PYPI_API_TOKEN is not set"
+            exit 1
+          else
+            echo "✅ Secret is set"
+          fi
+        env:
+          TEST_PYPI_API_TOKEN: ${{ secrets.TEST_PYPI_API_TOKEN }}
+      - name: Upload to TestPyPI (debug)
+        run: |
+          ls -lh dist/
+          python -m pip install --quiet twine
+          twine check dist/* || exit 1
+          twine upload --verbose --repository-url https://test.pypi.org/legacy/ dist/*
+        env:
+          TWINE_USERNAME: __token__
+          TWINE_PASSWORD: ${{ secrets.TEST_PYPI_API_TOKEN }}
+      - name: Upload to TestPyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          repository-url: https://test.pypi.org/legacy/
+          password: ${{ secrets.TEST_PYPI_API_TOKEN }}
+          attestations: false 
+
+  publish:
+    needs: test_publish
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+      - run: pip install build
+      - run: python -m build
+      - name: Check if PYPI_API_TOKEN is set
+        run: |
+          if [ -z "$PYPI_API_TOKEN" ]; then
+            echo "❌ PYPI_API_TOKEN is not set"
+            exit 1
+          else
+            echo "✅ Secret is set"
+          fi
+        env:
+          PYPI_API_TOKEN: ${{ secrets.PYPI_API_TOKEN }}
+      - name: Upload to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.PYPI_API_TOKEN }}

standard_evaluator-0.1.7/.github/workflows/python-package.yml

@@ -0,0 +1,35 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+
+name: Python package
+
+on:
+  push:
+    branches: [ "main", "dev" ]
+  pull_request:
+    branches: [ "main", "dev" ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.9", "3.10", "3.11"]
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Build package
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install build
+        python -m build
+    - name: Test package with pytest
+      run: |
+        pip install $(echo ./dist/*.whl)[test]
+        pytest

standard_evaluator-0.1.7/.gitignore

@@ -0,0 +1,40 @@
+.env
+.pytest_cache
+*.pyc
+__pycache__
+dist/*
+build/*
+dist/
+build/
+*.egg-info/*
+*.egg-info/
+.local
+venv
+.venv
+.coverage
+coverage.xml
+report.xml
+.cache
+.vscode
+.python-gitlab.cfg
+.cf-bucket-keys
+.project-config
+.project-config-local
+scripts
+experimenting/reports/*
+experimenting/.ipynb_checkpoints/*
+experimenting/problem*_out
+
+docs/source/demos/reports/*
+docs/source/demos/problem*_out
+docs/source/demos/.ipynb_checkpoints/*
+#docs/source/demos/after.json
+#docs/source/demos/demo_group.json
+#docs/source/demos/demo_group_NASA.json
+#docs/source/demos/state.h5
+#docs/source/demos/optproblem*.json
+docs/_html
+docs/jupyter_execute
+
+scripts/
+__main__*

standard_evaluator-0.1.7/LICENSE

@@ -0,0 +1,13 @@
+Copyright 2024, The Boeing Company 
+
+   Licensed under the Apache License, Version 2.0 (the "License");
+   you may not use this file except in compliance with the License.
+   You may obtain a copy of the License at
+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
+   distributed under the License is distributed on an "AS IS" BASIS,
+   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+   See the License for the specific language governing permissions and
+   limitations under the License.

standard_evaluator-0.1.7/PKG-INFO

@@ -0,0 +1,61 @@
+Metadata-Version: 2.4
+Name: standard_evaluator
+Version: 0.1.7
+Summary: Project description
+Author-email: joerg.m.gablonsky@boeing.com
+Classifier: Programming Language :: Python :: 3
+Classifier: Operating System :: OS Independent
+Classifier: License :: OSI Approved :: Apache Software License
+Requires-Python: >=3.7
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: numpy
+Requires-Dist: openmdao<=3.37.0
+Requires-Dist: om-aviary
+Requires-Dist: json-numpy
+Requires-Dist: pydantic==2.10.6
+Requires-Dist: h5py
+Requires-Dist: numpydantic
+Provides-Extra: test
+Requires-Dist: pytest; extra == "test"
+Requires-Dist: pytest-cov; extra == "test"
+Requires-Dist: coverage; extra == "test"
+Provides-Extra: dev
+Requires-Dist: pytest; extra == "dev"
+Requires-Dist: pytest-cov; extra == "dev"
+Requires-Dist: coverage; extra == "dev"
+Requires-Dist: black; extra == "dev"
+Requires-Dist: flake8; extra == "dev"
+Requires-Dist: jupyter; extra == "dev"
+Provides-Extra: docs
+Requires-Dist: pytest; extra == "docs"
+Requires-Dist: pytest-cov; extra == "docs"
+Requires-Dist: coverage; extra == "docs"
+Requires-Dist: black; extra == "docs"
+Requires-Dist: flake8; extra == "docs"
+Requires-Dist: sphinx; extra == "docs"
+Requires-Dist: jupyter; extra == "docs"
+Requires-Dist: autodocsumm; extra == "docs"
+Requires-Dist: pytest-cov; extra == "docs"
+Requires-Dist: sphinxcontrib-mermaid; extra == "docs"
+Requires-Dist: sphinx-rtd-theme; extra == "docs"
+Requires-Dist: jupyter_core<=5.1.0; extra == "docs"
+Requires-Dist: myst-nb; extra == "docs"
+Dynamic: license-file
+
+# Standard Evaluator
+
+This project expands the capabilities of the OpenMDAO components. It was developed under NASA Contract 80GRC023CA045.
+
+Note that this is a very early prototype. We are actively working on improving the documentation and descriptions.
+
+## Installation
+
+`pip install standard-evaluator`
+
+Optionally clone the repo and install locally.
+
+- The docs folder contains the source code of the documentation, which includes the demos. Note that this has not been moved here yet.
+- Experimenting is a folder we use to experiment with code. 
+- The src folder contains the actual source code of the standard evaluator.
+- Finally the tests folder contains our unit tests.

standard_evaluator-0.1.7/README.md

@@ -0,0 +1,16 @@
+# Standard Evaluator
+
+This project expands the capabilities of the OpenMDAO components. It was developed under NASA Contract 80GRC023CA045.
+
+Note that this is a very early prototype. We are actively working on improving the documentation and descriptions.
+
+## Installation
+
+`pip install standard-evaluator`
+
+Optionally clone the repo and install locally.
+
+- The docs folder contains the source code of the documentation, which includes the demos. Note that this has not been moved here yet.
+- Experimenting is a folder we use to experiment with code. 
+- The src folder contains the actual source code of the standard evaluator.
+- Finally the tests folder contains our unit tests.

standard_evaluator-0.1.7/additional_options.json

@@ -0,0 +1 @@
+{"n1": {"additional_option_1": "little", "additional_option_2": "big"}, "n2": {"additional_option_1": "little", "additional_option_2": "big"}, "D1": {"additional_option_1": "little", "additional_option_2": "big"}, "R1": {"additional_option_1": "little", "additional_option_2": "big"}}

standard_evaluator-0.1.7/docs/source/_ext/format-class.py

@@ -0,0 +1,242 @@
+"""
+Created Nov. 29, 2022
+
+@author Mikel Woo
+"""
+from typing import Optional
+
+from autodocsumm import AutoSummClassDocumenter
+from docutils.statemachine import StringList
+from sphinx.application import Sphinx
+from sphinx.ext.autodoc import bool_option
+
+
+class FormatClass(AutoSummClassDocumenter):
+    """Adds the :print-options: option to the autoclass directive. Using this
+    option will print the unique identifier of the class as well as format the
+    available options in an easy to read manner. It can be used as follows:
+
+        .. autoclass:: sample.Class
+            :print-options:
+
+    Also adds the :known-solution: option which is used by test evaluators
+    to print out the known solution(s). Use the :known-solution: option.
+
+    This feature is implemented similarly to how the autodocsumm extension
+    creates the attribute and method summary tables. That extension simply
+    overrides the autodoc formatters and adds in the summary table capability.
+    To ensure compatability with that extension, this extension does the same
+    thing but overriding the autodocsumm class formatter.
+    """
+    # Set this to have highest priority
+    priority = 10 + AutoSummClassDocumenter.priority
+
+    # Copy options
+    option_spec = dict(AutoSummClassDocumenter.option_spec)
+    # Add print-options and knonw-solution options
+    option_spec['print-options'] = bool_option
+    option_spec['known-solution'] = bool_option
+
+    def add_content(self, more_content: Optional[StringList]) -> None:
+        """This method generates the RST content that will be rendered. When
+        Sphinx encounters an autoclass directive it will call this method to
+        fill in what content should be in place of the directive.
+
+        Parameters
+        ----------
+        more_content : Optional[StringList]
+            List of strings containing the content of anything placed within the
+            directive that is not an option. For example:
+
+                .. autoclass:: sample.Test
+                    :print-options:
+
+                    This line will show up
+                    As will this one
+
+                    .. math::
+                        y = mx + b
+
+                    This line and the equation above will show up
+
+            All the lines (even blank ones) after the blank line below
+            :print-options: will be in more_content
+        """
+        # Call add_content of the autodoc ClassDocumenter which the autosummary
+        # AutoSummClassDocumenter derives from. This is to allow us to control
+        # when the summary tables are printed
+        super(AutoSummClassDocumenter, self).add_content(more_content)
+
+        # Print options if print-options is set and no-print-options isn't
+        if 'print-options' in self.options and 'no-print-options' not in self.options:
+            self._print_options()
+
+        # Print known solution(s) if known-solution is set and no-known-solution isn't
+        if 'known-solution' in self.options and 'no-known-solution' not in self.options:
+            self._print_known_solution()
+
+        # Add table of attributes and methods below unique_name and options
+        # This method handles the :autosummary: option from autodocsumm. It's
+        # placed here to have options printed before the method summary.
+        self.add_autosummary(True)
+
+    def _print_options(self):
+        """Prints out and formats option information for a given class. If the
+        class has a ``unique_name`` attribute then that will be printed as well.
+        If the class has an ``options`` attribute with options defined in a
+        dictionary, then each option will be printed in a list with its
+        explanation, bounds, and default value.
+        """
+        # Source name tells sphinx which document is being writtne to
+        source_name = self.get_sourcename()
+        # A reference to the class object
+        obj = self.object
+
+        was_printed = False
+
+        # Print unique name
+        if hasattr(obj, 'unique_name'):
+            # Add space between class description and this
+            self.add_line('|', source_name)
+            self.add_line('', source_name)
+            # Give the title a CSS class for styling
+            self.add_line('.. rst-class:: title', source_name)
+            self.add_line('', source_name)
+            self.add_line(f'**Identifier:** *{obj.unique_name}*', source_name)
+            self.add_line('', source_name)
+
+            was_printed = True
+
+        # Print options list
+        if hasattr(obj, 'options'):
+            self.add_line('|', source_name)
+            self.add_line('', source_name)
+            self.add_line('.. rst-class:: title', source_name)
+            self.add_line('', source_name)
+            self.add_line('**Options**', source_name)
+            self.add_line('', source_name)
+
+            # Add options-list class to style options list
+            self.add_line('.. rst-class:: options-list', source_name)
+            self.add_line('', source_name)
+
+            tab = '  '
+            # Print option info
+            for name, info in obj.options.items():
+                # Name
+                self.add_line(f'- **{name}**', source_name)
+                self.add_line('', source_name)
+                # Explanation
+                self.add_line('  ' + info['expl'], source_name)
+                self.add_line('', source_name)
+                # Bounds
+                self.add_line(tab + f'- Bounds: {info["bounds"]}', source_name)
+                # Default value
+                if isinstance(info['value'], (int, float)):
+                    self.add_line(tab + f'- Default: {info["value"]:,}', source_name)
+                else:
+                    self.add_line(tab + f'- Default: {info["value"]}', source_name)
+
+            was_printed = True
+
+        # Add a gap between content printed above and method summary table
+        if was_printed:
+            self.add_line('', source_name)
+            self.add_line('|', source_name)
+
+        # Make sure there is a blank line at the end so nothing breaks
+        self.add_line('', source_name)
+
+    def _print_known_solution(self):
+        # Source name tells sphinx which document is being writtne to
+        source_name = self.get_sourcename()
+        # A reference to the class object
+        obj = self.object
+
+        # Don't print anything if there is no known_solution property
+        if not hasattr(obj, 'known_solution'):
+            return
+
+        # Instantiate the class so we can access it's properties
+        # Skip classes that aren't fully defined (ie. missing abstract methods)
+        try:
+            inst = obj()
+        except TypeError:
+            return
+
+        # Get known solution, variable names, and response names
+        sol = inst.known_solution
+        variables = list(inst.problem['variables'].keys())
+        responses = list(inst.problem['responses'].keys())
+
+        # Add space between docstring and solution table
+        self.add_line('|', source_name)
+        self.add_line('', source_name)
+        # Add CSS title class to format Known Solution title
+        self.add_line('.. rst-class:: title', source_name)
+        self.add_line('', source_name)
+
+        # No known solution
+        if sol is None:
+            self.add_line('**Known Solution**', source_name)
+            self.add_line('', source_name)
+            self.add_line('No known solution!', source_name)
+        # Print known solution(s)
+        else:
+            # Print title
+            if len(sol) == 1:
+                self.add_line('**Known Solution**', source_name)
+            else:
+                self.add_line('**Known Solutions**', source_name)
+
+            self.add_line('', source_name)
+
+            tab = ' '*4
+
+            # Create table with a row for each solution
+            self.add_line('.. list-table::', source_name)
+            # Table will span whole width of rendered area
+            self.add_line(tab + ':width: 100', source_name)
+            # Only one header row
+            self.add_line(tab + ':header-rows: 1', source_name)
+            self.add_line('', source_name)
+
+            # Fill in header row
+            for i, name in enumerate(variables + responses):
+                if i == 0:
+                    self.add_line(tab + f'* - {name}', source_name)
+                else:
+                    self.add_line(tab + f'  - {name}', source_name)
+
+            # Fill in table
+            for i in range(len(sol)):
+                row = sol.iloc[i]
+
+                for j, name in enumerate(variables + responses):
+                    if j == 0:
+                        self.add_line(tab + f'* - {row[name]}', source_name)
+                    else:
+                        self.add_line(tab + f'  - {row[name]}', source_name)
+
+        # Add gap between this and content below
+        self.add_line('', source_name)
+        self.add_line('|', source_name)
+        self.add_line('', source_name)
+
+
+def setup(app: Sphinx) -> None:
+    """Loads in required extensions and registers actions, documenters, etc.
+    with Sphinx to allow them to be used.
+
+    Parameters
+    ----------
+    app : Sphinx
+        The current Sphinx instance.
+    """
+    # Load the autodoc and autodocsumm extentsions since both are required
+    app.setup_extension('sphinx.ext.autodoc')
+    app.setup_extension('autodocsumm')
+
+    # Register this custom documenter with Sphinx
+    # Set override to True so that warnings are not given about existing name
+    app.add_autodocumenter(FormatClass, override=True)

standard_evaluator-0.1.7/docs/source/_static/css/class_doc.css

@@ -0,0 +1,35 @@
+/* Put properties on their own lines */
+dl.property {
+    display: block !important;
+}
+
+
+/* Add space between options */
+ul.options-list > li:last-child {
+    margin-bottom: 1em;
+}
+
+/* Remove marker before option name */
+ul.options-list > li::marker {
+    content: none;
+}
+
+/* Change spacing around option explanation */
+ul.options-list > li > p:nth-child(2) {
+    margin: -.75em 0 -.25em .75em;
+}
+
+/* Change marker on option info to en dash */
+ul.options-list > li > ul > li::marker {
+    content: "– ";
+}
+
+/* Increase font size on identifier and option title */
+p.title {
+    font-size: 1.25em;
+}
+
+/* reduce space between titles */
+.title ~ .line-block {
+    margin: 0;
+}

standard_evaluator-0.1.7/docs/source/_static/css/general.css

@@ -0,0 +1,35 @@
+/* Make the documentation content a little wider */
+.wy-nav-content {
+    max-width: 65%;
+}
+
+
+/* Slightly reduce dataframe font size to make it easier to view/read. Also,
+   make it so that wide dataframes have a horizontal scrollbar */
+div.output table.dataframe {
+    display: block;
+    font-size: .75em;
+    overflow-x: auto;
+    width: fit-content;
+    margin: auto;
+}
+
+/* Make index column stick to left */
+table.dataframe tbody th {
+    position: sticky;
+    left: 0;
+}
+
+/* Give index cells a background to not show values beneath */
+table.dataframe tbody tr:nth-child(even) th {
+    background-color: white;
+}
+table.dataframe tbody tr:nth-child(even):hover th {
+    background-color: #d9edfd;
+}
+table.dataframe tbody tr:nth-child(odd) th {
+    background-color: #f5f5f5;
+}
+table.dataframe tbody tr:nth-child(odd):hover th {
+    background: #d7e8f5;
+}

standard_evaluator-0.1.7/docs/source/_static/js/custom.js

@@ -0,0 +1,7 @@
+// Configure the require.js package to recognize plotly
+requirejs.config({
+    paths: {
+        base: '/static/base',
+        Plotly: 'https://cdn.plot.ly/plotly-latest.min.js',
+    },
+});

standard_evaluator-0.1.7/docs/source/_static/js/require.min.js

@@ -0,0 +1,5 @@
+/** vim: et:ts=4:sw=4:sts=4
+ * @license RequireJS 2.3.6 Copyright jQuery Foundation and other contributors.
+ * Released under MIT license, https://github.com/requirejs/requirejs/blob/master/LICENSE
+ */
+var requirejs,require,define;!function(global,setTimeout){var req,s,head,baseElement,dataMain,src,interactiveScript,currentlyAddingScript,mainScript,subPath,version="2.3.6",commentRegExp=/\/\*[\s\S]*?\*\/|([^:"'=]|^)\/\/.*$/gm,cjsRequireRegExp=/[^.]\s*require\s*\(\s*["']([^'"\s]+)["']\s*\)/g,jsSuffixRegExp=/\.js$/,currDirRegExp=/^\.\//,op=Object.prototype,ostring=op.toString,hasOwn=op.hasOwnProperty,isBrowser=!("undefined"==typeof window||"undefined"==typeof navigator||!window.document),isWebWorker=!isBrowser&&"undefined"!=typeof importScripts,readyRegExp=isBrowser&&"PLAYSTATION 3"===navigator.platform?/^complete$/:/^(complete|loaded)$/,defContextName="_",isOpera="undefined"!=typeof opera&&"[object Opera]"===opera.toString(),contexts={},cfg={},globalDefQueue=[],useInteractive=!1;function commentReplace(e,t){return t||""}function isFunction(e){return"[object Function]"===ostring.call(e)}function isArray(e){return"[object Array]"===ostring.call(e)}function each(e,t){var 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standard_evaluator-0.1.7/docs/source/_templates/footer.html

@@ -0,0 +1,2 @@
+{% extends '!footer.html' %} {% block extrafooter %} {{super}} 
+{% endblock %}