stackformers 3.9.0__tar.gz → 3.9.2__tar.gz

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  1. stackformers-3.9.2/CHANGELOG.md +219 -0
  2. {stackformers-3.9.0 → stackformers-3.9.2}/PKG-INFO +1 -1
  3. {stackformers-3.9.0 → stackformers-3.9.2}/pyproject.toml +1 -1
  4. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/attention/README.md +4 -2
  5. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/attention/ops.py +8 -57
  6. stackformers-3.9.2/stackformers/attention/varlen_backend.py +88 -0
  7. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/positional/rope2d.py +15 -5
  8. stackformers-3.9.2/tests/attention/test_varlen_backend.py +122 -0
  9. {stackformers-3.9.0 → stackformers-3.9.2}/tests/positional/test_rope.py +163 -8
  10. {stackformers-3.9.0 → stackformers-3.9.2}/uv.lock +1 -1
  11. {stackformers-3.9.0 → stackformers-3.9.2}/.claudeignore +0 -0
  12. {stackformers-3.9.0 → stackformers-3.9.2}/.gitignore +0 -0
  13. {stackformers-3.9.0 → stackformers-3.9.2}/.python-version +0 -0
  14. {stackformers-3.9.0 → stackformers-3.9.2}/.vscode/settings.json +0 -0
  15. {stackformers-3.9.0 → stackformers-3.9.2}/CLAUDE.md +0 -0
  16. {stackformers-3.9.0 → stackformers-3.9.2}/Justfile +0 -0
  17. {stackformers-3.9.0 → stackformers-3.9.2}/LICENSE +0 -0
  18. {stackformers-3.9.0 → stackformers-3.9.2}/PLAN.md +0 -0
  19. {stackformers-3.9.0 → stackformers-3.9.2}/README.md +0 -0
  20. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/__init__.py +0 -0
  21. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/attention/__init__.py +0 -0
  22. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/attention/bias.py +0 -0
  23. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/attention/config.py +0 -0
  24. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/attention/cross_attn.py +0 -0
  25. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/attention/protocols.py +0 -0
  26. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/attention/self_attn.py +0 -0
  27. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/config.py +0 -0
  28. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/cross_attender.py +0 -0
  29. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/decoder.py +0 -0
  30. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/encoder.py +0 -0
  31. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/feedforward/README.md +0 -0
  32. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/feedforward/__init__.py +0 -0
  33. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/feedforward/config.py +0 -0
  34. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/feedforward/factory.py +0 -0
  35. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/feedforward/geglu.py +0 -0
  36. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/feedforward/protocols.py +0 -0
  37. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/feedforward/relu_squared.py +0 -0
  38. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/feedforward/swiglu.py +0 -0
  39. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/layers.py +0 -0
  40. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/norm/README.md +0 -0
  41. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/norm/__init__.py +0 -0
  42. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/norm/config.py +0 -0
  43. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/norm/factory.py +0 -0
  44. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/norm/protocols.py +0 -0
  45. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/positional/README.md +0 -0
  46. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/positional/__init__.py +0 -0
  47. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/positional/config.py +0 -0
  48. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/positional/factory.py +0 -0
  49. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/positional/learned.py +0 -0
  50. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/positional/none.py +0 -0
  51. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/positional/protocols.py +0 -0
  52. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/positional/rope1d.py +0 -0
  53. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/presets/README.md +0 -0
  54. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/presets/__init__.py +0 -0
  55. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/presets/cross_attender.py +0 -0
  56. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/presets/decoder.py +0 -0
  57. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/presets/encoder.py +0 -0
  58. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/presets/pyramid_vision.py +0 -0
  59. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/sequence.py +0 -0
  60. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/spatial/README.md +0 -0
  61. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/spatial/__init__.py +0 -0
  62. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/spatial/config.py +0 -0
  63. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/spatial/factory.py +0 -0
  64. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/spatial/input.py +0 -0
  65. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/spatial/kv_reduction.py +0 -0
  66. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/spatial/layer.py +0 -0
  67. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/spatial/patch_merging.py +0 -0
  68. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/spatial/protocols.py +0 -0
  69. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/spatial/spatial_reduction.py +0 -0
  70. {stackformers-3.9.0 → stackformers-3.9.2}/stackformers/spatial/window.py +0 -0
  71. {stackformers-3.9.0 → stackformers-3.9.2}/tests/__init__.py +0 -0
  72. {stackformers-3.9.0 → stackformers-3.9.2}/tests/attention/__init__.py +0 -0
  73. {stackformers-3.9.0 → stackformers-3.9.2}/tests/attention/test_cross_attn.py +0 -0
  74. {stackformers-3.9.0 → stackformers-3.9.2}/tests/attention/test_kernels.py +0 -0
  75. {stackformers-3.9.0 → stackformers-3.9.2}/tests/attention/test_ops.py +0 -0
  76. {stackformers-3.9.0 → stackformers-3.9.2}/tests/attention/test_self_attn.py +0 -0
  77. {stackformers-3.9.0 → stackformers-3.9.2}/tests/conftest.py +0 -0
  78. {stackformers-3.9.0 → stackformers-3.9.2}/tests/feedforward/__init__.py +0 -0
  79. {stackformers-3.9.0 → stackformers-3.9.2}/tests/feedforward/test_geglu.py +0 -0
  80. {stackformers-3.9.0 → stackformers-3.9.2}/tests/feedforward/test_relu_squared.py +0 -0
  81. {stackformers-3.9.0 → stackformers-3.9.2}/tests/feedforward/test_swiglu.py +0 -0
  82. {stackformers-3.9.0 → stackformers-3.9.2}/tests/positional/__init__.py +0 -0
  83. {stackformers-3.9.0 → stackformers-3.9.2}/tests/positional/test_learned_pos.py +0 -0
  84. {stackformers-3.9.0 → stackformers-3.9.2}/tests/presets/__init__.py +0 -0
  85. {stackformers-3.9.0 → stackformers-3.9.2}/tests/presets/test_cross_attender.py +0 -0
  86. {stackformers-3.9.0 → stackformers-3.9.2}/tests/presets/test_decoder.py +0 -0
  87. {stackformers-3.9.0 → stackformers-3.9.2}/tests/presets/test_encoder.py +0 -0
  88. {stackformers-3.9.0 → stackformers-3.9.2}/tests/presets/test_pyramid_vision.py +0 -0
  89. {stackformers-3.9.0 → stackformers-3.9.2}/tests/spatial/__init__.py +0 -0
  90. {stackformers-3.9.0 → stackformers-3.9.2}/tests/spatial/test_input.py +0 -0
  91. {stackformers-3.9.0 → stackformers-3.9.2}/tests/spatial/test_kv_reduction.py +0 -0
  92. {stackformers-3.9.0 → stackformers-3.9.2}/tests/spatial/test_layer.py +0 -0
  93. {stackformers-3.9.0 → stackformers-3.9.2}/tests/spatial/test_patch_merging.py +0 -0
  94. {stackformers-3.9.0 → stackformers-3.9.2}/tests/spatial/test_spatial_reduction.py +0 -0
  95. {stackformers-3.9.0 → stackformers-3.9.2}/tests/spatial/test_window.py +0 -0
  96. {stackformers-3.9.0 → stackformers-3.9.2}/tests/test_cross_attender.py +0 -0
  97. {stackformers-3.9.0 → stackformers-3.9.2}/tests/test_decoder.py +0 -0
  98. {stackformers-3.9.0 → stackformers-3.9.2}/tests/test_encoder.py +0 -0
  99. {stackformers-3.9.0 → stackformers-3.9.2}/tests/test_layers.py +0 -0
  100. {stackformers-3.9.0 → stackformers-3.9.2}/tests/test_norm.py +0 -0
  101. {stackformers-3.9.0 → stackformers-3.9.2}/tests/test_sequence.py +0 -0
@@ -0,0 +1,219 @@
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+ # Changelog
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+
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+ All notable changes to this project are documented here.
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+
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+ The format follows [Keep a Changelog](https://keepachangelog.com/en/1.1.0/), and this project
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+ adheres to [Semantic Versioning](https://semver.org/): MAJOR for breaking public API changes,
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+ MINOR for backwards-compatible features, PATCH for bug fixes and internal changes.
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+
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+ ## [3.9.2] — 2026-07-14
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+
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+ ### Fixed
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+
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+ - **`RotaryEmbedding2D` was not computing a rotation.** The frequency vector was laid out as
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+ `[row | row | col | col]`, but `_rotate_half` pairs channel `i` with channel `i + dh/2`, so a
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+ row angle was paired against a column angle. The resulting 2×2 map had
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+ `det = cos((row − col) · ωᵢ)` and singular values `√(1 ± |sin D|)` — a squeeze, not a rotation.
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+ It was therefore non-orthogonal, annihilated high-frequency channels wherever the determinant
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+ reached zero, and produced attention scores that leaked absolute position instead of depending
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+ only on relative offset. Frequencies are now built as `[row | col | row | col]`.
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+ - `RotaryEmbedding2D` now casts positions and `inv_freq` to float32 for the outer product,
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+ matching `RotaryEmbedding1D`. A `.half()`-ed module previously lost position precision.
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+
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+ ### Changed
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+
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+ - **Numerics of `RotaryEmbedding2D` change.** Any checkpoint trained against the previous
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+ encoding is tuned to the broken position code and requires retraining or finetuning.
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+
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+ ### Added
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+
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+ - Math tests for `RotaryEmbedding2D` on a genuine row-major grid: a definition-first reference
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+ oracle, orthogonality (norms and inner products), relative-offset invariance, per-axis
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+ sensitivity, distinct-offset separation, and packed/padded agreement. The previous test used a
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+ `row == col` position grid — the main diagonal, the one locus where the row and column angles
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+ coincide and the broken layout is indistinguishable from a correct one.
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+
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+ ## [3.9.1] — 2026-06-30
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+
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+ ### Fixed
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+
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+ - Make the experimental `varlen_attn` import and call robust across PyTorch versions.
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+
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+ ## [3.9.0] — 2026-06-17
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+
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+ ### Added
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+
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+ - 2-D grid attention (`spatial`) and the pyramid vision backbone preset.
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+
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+ ## [3.8.2] — 2026-05-29
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+
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+ ### Fixed
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+
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+ - Force absolute positions to float32 in `sequence`.
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+
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+ ## [3.8.1] — 2026-05-29
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+
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+ ### Fixed
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+
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+ - Keep batch size as a `SymInt` in the packed attention fallback, preserving `torch.export`
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+ compatibility.
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+
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+ ## [3.8.0] — 2026-05-27
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+
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+ ### Fixed
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+
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+ - Replace `.tolist()` loops in `sequence` and `ops` with tensor operations, making them
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+ `torch.export`-compatible.
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+
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+ ### Added
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+
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+ - PyPI publish metadata in `pyproject.toml`.
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+
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+ ## [3.7.0] — 2026-05-21
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+
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+ ### Changed
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+
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+ - Introduce abstract generic base classes for all presets.
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+
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+ ## [3.6.0] — 2026-05-21
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+
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+ ### Added
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+
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+ - `AttnBias` protocol and the `NoAttnBias` null object on `SelfAttention`.
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+
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+ ## [3.5.2] — 2026-05-21
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+
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+ ### Fixed
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+
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+ - Warn and fall back to SDPA when `varlen_attn` raises.
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+
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+ ## [3.5.1] — 2026-05-18
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+
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+ ### Changed
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+
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+ - Move attention dropout to the output projection.
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+
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+ ## [3.5.0] — 2026-05-18
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+
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+ ### Added
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+
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+ - Packed→padded SDPA fallback; extract `ops.py`.
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+
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+ ## [3.4.2] — 2026-05-18
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+
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+ ### Added
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+
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+ - `padded_to_packed` and `packed_to_padded` helpers.
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+
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+ ## [3.4.1] — 2026-05-18
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+
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+ ### Removed
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+
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+ - Packed-attention CPU fallback; warn on dropout instead.
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+
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+ ## [3.4.0] — 2026-05-17
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+
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+ ### Added
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+ - ReLU² feed-forward network.
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+ ## [3.3.0] — 2026-05-17
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+
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+ ### Added
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+ - QK-norm in attention; all config fields documented.
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+
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+ ## [3.2.0] — 2026-05-17
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+
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+ ### Changed
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+
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+ - Eliminate layout-specific duplicates in positional encoding implementations.
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+
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+ ## [3.1.0] — 2026-05-17
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+
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+ ### Changed
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+
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+ - Replace `forward()` on positional encodings with `forward_padded` / `forward_packed`, so
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+ callers pick the path for the layout they already know.
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+
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+ ## [3.0.1] — 2026-05-17
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+
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+ ### Fixed
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+
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+ - Use the GELU tanh approximation in GEGLU.
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+
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+ ## [3.0.0] — 2026-05-16
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+
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+ ### Changed
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+
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+ - **Breaking:** remove the kernel abstraction; padded and packed dispatch are unified.
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+
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+ ## [2.0.2] — 2026-05-16
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+
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+ ### Removed
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+ - The unused local-attention package.
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+
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+ ## [2.0.1] — 2026-05-16
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+
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+ ### Changed
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+
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+ - Store feed-forward activations as `nn.Module` attributes.
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+
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+ ## [2.0.0] — 2026-05-16
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+
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+ ### Removed
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+
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+ - **Breaking:** the `attn_bias` / ALiBi system.
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+
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+ ## [1.1.0] — 2026-05-16
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+
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+ ### Added
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+
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+ - `LearnedPosEncoding` with absolute position embeddings.
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+ ## [1.0.1] — 2026-05-16
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+ ### Added
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+ - `LayerNorm` wrapper.
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+ ## [1.0.0] — 2026-05-16
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+ ### Added
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+ - GEGLU feed-forward variant.
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+
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+ ### Changed
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+
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+ - **Breaking:** feed-forward config becomes a discriminated union.
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+ ## [0.5.0] — 2026-05-16
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+
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+ ### Added
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+ - Unfold mode for the windowed SDPA kernel.
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+ ## [0.4.0] — 2026-05-15
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+ ### Added
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+ - `RotaryEmbedding2D` and the packed cross-attender.
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+ ## [0.3.0] — 2026-05-14
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+ ### Changed
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+ - Establish the semantic versioning convention.
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+ ## [0.2.0] — 2026-05-13
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+ ### Changed
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+ - Remove the `v1` namespace; add the `presets` package.
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+ ## [0.1.0] — 2026-05-13
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+
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+ ### Added
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+ - Initial library scaffold.
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: stackformers
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- Version: 3.9.0
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+ Version: 3.9.2
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  Summary: Typed, composable, SOLID transformer library for PyTorch
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  Project-URL: Homepage, https://github.com/Red-Eyed/stackformers
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  Project-URL: Repository, https://github.com/Red-Eyed/stackformers
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
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  [project]
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  name = "stackformers"
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- version = "3.9.0"
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+ version = "3.9.2"
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  description = "Typed, composable, SOLID transformer library for PyTorch"
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  readme = "README.md"
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  license = { file = "LICENSE" }
@@ -8,9 +8,11 @@ Multi-head self-attention and cross-attention.
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  **Static vs runtime dispatch.** The attention *type* (global vs sliding-window) is determined at construction time via `window_size: int | None` in `SelfAttentionConfig`. The *backend* (padded vs packed) is determined at runtime: `SelfAttention.forward` and `CrossAttention.forward` dispatch on `SequenceInput` via `match`. This means one model handles both training (packed) and inference (padded) without swapping classes.
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- **Kernel ops in `ops.py`.** All low-level attention math lives in `attention/ops.py`: mask builders, `packed_attn` (thin `varlen_attn` wrapper), `padded_sdpa`, and `packed_attn_or_fallback`. The modules stay thin dispatchers.
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+ **Kernel ops in `ops.py`.** All low-level attention math lives in `attention/ops.py`: mask builders, `padded_sdpa`, the packed↔padded scatter/gather helpers, and `packed_attn_or_fallback`. The modules stay thin dispatchers.
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- **Packed attention with automatic fallback.** `PackedInput` normally routes to `varlen_attn`, which requires CUDA and `float16`/`bfloat16`. When those conditions are not met (CPU, float32, `torch.export`), `packed_attn_or_fallback` transparently scatters q/k/v to padded layout, runs `F.scaled_dot_product_attention`, and gathers the result back to packed same weights, same output shape `(nt, h, d)`. A `UserWarning` is emitted so callers know they are on the slow path. Dropout works on the fallback path; it is silently skipped only when `varlen_attn` is used (which does not accept a dropout argument).
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+ **Experimental kernel behind one interface function.** `torch.nn.attention.varlen` is an experimental API the symbol is absent in some torch builds and its signature is not stable. Everything that touches it lives in `varlen_backend.py` behind a single function, `try_varlen_attn(...) -> Tensor | None`: the guarded import, the eligibility/bias checks, and the call itself. The rest of the package depends only on that function and never on the volatile import path, so an absent or renamed symbol degrades to the fallback instead of breaking the whole package at import time.
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+
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+ **Packed attention with automatic fallback.** `PackedInput` normally routes to `varlen_attn`, which requires CUDA and `float16`/`bfloat16`. `packed_attn_or_fallback` calls `try_varlen_attn`; a `None` result means take the padded path — scatter q/k/v to padded layout, run `F.scaled_dot_product_attention`, and gather the result back to packed (same weights, same output shape `(nt, h, d)`). The fallback runs **silently** for the expected CPU/float32/`torch.export` route, and **with a `UserWarning` explaining why** when the kernel was eligible but unusable: it failed to import, an attention bias is present (no bias slot), or the call raised a runtime/signature error (unsupported GPU or a changed experimental API). Dropout works on the fallback path; it is silently skipped only when `varlen_attn` is used (which does not accept a dropout argument).
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15
17
  **`torch.export` and `torch.compile` compatibility.** All scatter/gather helpers in `ops.py` (`_cu_to_indices`, `_packed_heads_to_padded`, `_padded_heads_to_packed`) are fully export-compatible. The key design constraint is that per-document length iteration must never use Python-side loops over data-dependent values (i.e., no `.tolist()` followed by a list comprehension). Instead, `_cu_to_indices` uses `torch.repeat_interleave` to produce `batch_idx` and derives `pos_idx` via the identity `arange(nt) - cu[batch_idx]`. This keeps the computation graph purely symbolic even when `nt` (total tokens) is a data-dependent unbacked symbol.
16
18
 
@@ -1,19 +1,13 @@
1
1
  from __future__ import annotations
2
2
 
3
- import warnings
4
-
5
3
  import torch
6
4
  import torch.nn.functional as F
7
5
  from torch import Tensor
8
- from torch.nn.attention.varlen import varlen_attn as _varlen_attn
9
6
 
7
+ from stackformers.attention.varlen_backend import try_varlen_attn
10
8
  from stackformers.sequence import PackedSequence
11
9
 
12
10
 
13
- def varlen_supported(q: Tensor) -> bool:
14
- return q.is_cuda and q.dtype in (torch.float16, torch.bfloat16)
15
-
16
-
17
11
  def padding_mask(mask: Tensor, dtype: torch.dtype) -> Tensor:
18
12
  bias = torch.zeros(mask.shape, dtype=dtype, device=mask.device)
19
13
  bias.masked_fill_(~mask, torch.finfo(dtype).min)
@@ -34,12 +28,6 @@ def window_mask(n: int, s: int, window_size: int, causal: bool, device: torch.de
34
28
  return mask
35
29
 
36
30
 
37
- def varlen_window(causal: bool, window_size: int | None) -> tuple[int, int]:
38
- if window_size is None:
39
- return (-1, 0) if causal else (-1, -1)
40
- return (window_size, 0) if causal else (window_size // 2, window_size // 2)
41
-
42
-
43
31
  def padded_sdpa(
44
32
  q: Tensor,
45
33
  k: Tensor,
@@ -101,30 +89,6 @@ def _padded_heads_to_packed(x: Tensor, mask: Tensor) -> Tensor:
101
89
  return x.permute(0, 2, 1, 3)[mask]
102
90
 
103
91
 
104
- def packed_attn(
105
- q: Tensor,
106
- k: Tensor,
107
- v: Tensor,
108
- q_seq: PackedSequence,
109
- k_seq: PackedSequence,
110
- causal: bool,
111
- window_size: int | None,
112
- ) -> Tensor:
113
- win = varlen_window(causal, window_size)
114
- result = _varlen_attn(
115
- query=q,
116
- key=k,
117
- value=v,
118
- cu_seq_q=q_seq.cu_seqlens.to(torch.int32),
119
- cu_seq_k=k_seq.cu_seqlens.to(torch.int32),
120
- max_q=q_seq.max_seqlen,
121
- max_k=k_seq.max_seqlen,
122
- window_size=win,
123
- )
124
- assert isinstance(result, Tensor)
125
- return result
126
-
127
-
128
92
  def packed_attn_or_fallback(
129
93
  q: Tensor,
130
94
  k: Tensor,
@@ -135,29 +99,16 @@ def packed_attn_or_fallback(
135
99
  window_size: int | None,
136
100
  bias: Tensor | None,
137
101
  ) -> Tensor:
138
- """Run varlen attention; fall back to padded SDPA when unavailable.
102
+ """Run varlen attention; fall back to padded SDPA when it is unavailable.
139
103
 
140
104
  Inputs and output are all packed: q/k/v are (nt, h, d), result is (nt_q, h, d).
141
- bias=None no attention bias; varlen_attn is tried first.
142
- bias=Tensor attention bias present; varlen_attn is skipped (it has no bias slot) and a
143
- warning is emitted. Fallback also activates on CPU, non-float16/bfloat16 dtypes, or GPUs
144
- that do not support varlen_attn (e.g. compute capability < 8.0).
105
+ ``try_varlen_attn`` owns the experimental kernel and its warnings; ``None`` from it means
106
+ take the padded SDPA path silently for the expected CPU/float32/export route, or after
107
+ a warning when the kernel was eligible but unavailable.
145
108
  """
146
- if bias is not None and varlen_supported(q):
147
- warnings.warn(
148
- "varlen_attn does not support attention bias; falling back to padded SDPA. "
149
- "Performance may be lower.",
150
- stacklevel=2,
151
- )
152
- elif varlen_supported(q):
153
- try:
154
- return packed_attn(q, k, v, q_seq, k_seq, causal, window_size)
155
- except RuntimeError as exc:
156
- warnings.warn(
157
- f"varlen_attn is not supported on this device ({exc}); "
158
- "falling back to padded SDPA. Performance may be lower.",
159
- stacklevel=2,
160
- )
109
+ out = try_varlen_attn(q, k, v, q_seq, k_seq, causal, window_size, bias)
110
+ if out is not None:
111
+ return out
161
112
 
162
113
  # Keep b as SymInt-friendly: int(SymInt) forces specialization under torch.export.
163
114
  # Downstream consumers (_packed_heads_to_padded) accept SymInt for shape args.
@@ -0,0 +1,88 @@
1
+ """The experimental ``varlen_attn`` kernel behind one interface function.
2
+
3
+ ``torch.nn.attention.varlen`` is an experimental API: the symbol is absent in some torch
4
+ builds, and its call signature is not yet stable. Everything that touches it lives here —
5
+ the guarded import, the eligibility/bias checks, and the call itself — so the rest of the
6
+ package depends only on :func:`try_varlen_attn` and never on the volatile import path.
7
+ """
8
+
9
+ from __future__ import annotations
10
+
11
+ import warnings
12
+
13
+ import torch
14
+ from torch import Tensor
15
+
16
+ from stackformers.sequence import PackedSequence
17
+
18
+ _FALLBACK_NOTE = " Falling back to padded SDPA; performance may be lower."
19
+
20
+
21
+ def _load():
22
+ try:
23
+ from torch.nn.attention.varlen import varlen_attn
24
+ except ImportError as exc:
25
+ return None, f"varlen_attn could not be imported ({exc})"
26
+ return varlen_attn, None
27
+
28
+
29
+ _varlen_attn, _import_error = _load()
30
+
31
+
32
+ def _eligible(q: Tensor) -> bool:
33
+ """Whether this query's device/dtype is one ``varlen_attn`` would handle at all."""
34
+ return q.is_cuda and q.dtype in (torch.float16, torch.bfloat16)
35
+
36
+
37
+ def _window(causal: bool, window_size: int | None) -> tuple[int, int]:
38
+ if window_size is None:
39
+ return (-1, 0) if causal else (-1, -1)
40
+ return (window_size, 0) if causal else (window_size // 2, window_size // 2)
41
+
42
+
43
+ def _skip(reason: str) -> None:
44
+ warnings.warn(reason + _FALLBACK_NOTE, stacklevel=3)
45
+ return None
46
+
47
+
48
+ def try_varlen_attn(
49
+ q: Tensor,
50
+ k: Tensor,
51
+ v: Tensor,
52
+ q_seq: PackedSequence,
53
+ k_seq: PackedSequence,
54
+ causal: bool,
55
+ window_size: int | None,
56
+ bias: Tensor | None,
57
+ ) -> Tensor | None:
58
+ """Attempt varlen attention for a packed batch; return ``None`` to use the SDPA fallback.
59
+
60
+ q/k/v are ``(nt, h, d)``; the result is the packed ``(nt_q, h, d)`` tensor. ``None`` means
61
+ the caller should run the padded SDPA path instead. When varlen *would* apply (CUDA +
62
+ float16/bfloat16) but cannot, a ``UserWarning`` explains why: an absent kernel, an
63
+ attention bias (varlen_attn has no bias slot), or a runtime/signature error from the call
64
+ (an unsupported GPU or a changed experimental API). The expected CPU/float32/export route
65
+ returns ``None`` silently — that is normal, not a failure.
66
+ """
67
+ if not _eligible(q):
68
+ return None
69
+ if _varlen_attn is None:
70
+ return _skip(f"varlen_attn is unavailable ({_import_error}).")
71
+ if bias is not None:
72
+ return _skip("varlen_attn does not support attention bias.")
73
+ try:
74
+ result = _varlen_attn(
75
+ query=q,
76
+ key=k,
77
+ value=v,
78
+ cu_seq_q=q_seq.cu_seqlens.to(torch.int32),
79
+ cu_seq_k=k_seq.cu_seqlens.to(torch.int32),
80
+ max_q=q_seq.max_seqlen,
81
+ max_k=k_seq.max_seqlen,
82
+ window_size=_window(causal, window_size),
83
+ )
84
+ except (RuntimeError, TypeError) as exc:
85
+ return _skip(f"varlen_attn call failed ({type(exc).__name__}: {exc}).")
86
+ if not isinstance(result, Tensor):
87
+ return _skip(f"varlen_attn returned {type(result).__name__}, expected Tensor.")
88
+ return result
@@ -25,12 +25,22 @@ class RotaryEmbedding2D(nn.Module):
25
25
 
26
26
  @torch.no_grad()
27
27
  def _freqs_from_positions(self, positions: Tensor) -> Tensor:
28
- """positions: (..., 2) → freqs: (..., dh)"""
28
+ """positions: (..., 2) → freqs: (..., dh), laid out as [row | col | row | col].
29
+
30
+ _rotate_half pairs channel i with channel i + dh/2, so both members of a pair must
31
+ carry the same angle for the map to be a rotation. Duplicating the *concatenated*
32
+ half-vector satisfies that; concatenating the *duplicated* row and col blocks
33
+ ([row | row | col | col]) would pair a row angle against a col angle and yield a
34
+ squeeze instead — non-orthogonal, and not a function of relative position.
35
+
36
+ float32 cast ensures half-precision inputs don't lose precision in the outer product.
37
+ """
29
38
  inv: Tensor = self.inv_freq # type: ignore[assignment]
30
- row = positions[..., 0].to(dtype=inv.dtype).unsqueeze(-1) * inv # (..., dh//4)
31
- col = positions[..., 1].to(dtype=inv.dtype).unsqueeze(-1) * inv
32
- half = lambda f: torch.cat([f, f], dim=-1) # noqa: E731
33
- return torch.cat([half(row), half(col)], dim=-1) # (..., dh)
39
+ pos = positions.to(dtype=torch.float32)
40
+ row = pos[..., 0].unsqueeze(-1) * inv.float() # (..., dh//4)
41
+ col = pos[..., 1].unsqueeze(-1) * inv.float() # (..., dh//4)
42
+ half = torch.cat([row, col], dim=-1) # (..., dh//2)
43
+ return torch.cat([half, half], dim=-1) # (..., dh)
34
44
 
35
45
  def _encode(
36
46
  self, q: Tensor, k: Tensor, q_positions: Tensor, k_positions: Tensor
@@ -0,0 +1,122 @@
1
+ """Tests for stackformers/attention/varlen_backend.py.
2
+
3
+ Covers the fallback contract of ``try_varlen_attn``: it returns the kernel's tensor on the
4
+ happy path and ``None`` (with a reason-bearing ``UserWarning`` when the kernel was eligible
5
+ but unusable) on every degraded path — absent symbol, attention bias, a runtime/signature
6
+ error from the call, or a non-Tensor return. The experimental kernel is faked via monkeypatch
7
+ so the logic is exercised without CUDA or the real (possibly-absent) ``varlen_attn``.
8
+ """
9
+
10
+ from __future__ import annotations
11
+
12
+ import warnings
13
+
14
+ import pytest
15
+ import torch
16
+
17
+ from stackformers.attention import varlen_backend as vb
18
+ from stackformers.sequence import PackedSequence
19
+
20
+ NT, H, DH = 5, 2, 8
21
+
22
+ Packed = tuple[torch.Tensor, torch.Tensor, torch.Tensor, PackedSequence]
23
+
24
+
25
+ @pytest.fixture
26
+ def packed() -> Packed:
27
+ """Two packed sequences (lengths 3 and 2) of (nt, h, d) q/k/v plus their PackedSequence."""
28
+ seq = PackedSequence(cu_seqlens=torch.tensor([0, 3, 5], dtype=torch.long), max_seqlen=3)
29
+ q = torch.randn(NT, H, DH)
30
+ k = torch.randn(NT, H, DH)
31
+ v = torch.randn(NT, H, DH)
32
+ return q, k, v, seq
33
+
34
+
35
+ @pytest.fixture
36
+ def force_eligible(monkeypatch: pytest.MonkeyPatch) -> None:
37
+ """Pretend the query is CUDA + float16 so the eligibility guard does not short-circuit."""
38
+ monkeypatch.setattr(vb, "_eligible", lambda q: True)
39
+
40
+
41
+ def _attempt(packed: Packed, bias: torch.Tensor | None = None) -> torch.Tensor | None:
42
+ q, k, v, seq = packed
43
+ return vb.try_varlen_attn(q, k, v, seq, seq, causal=False, window_size=None, bias=bias)
44
+
45
+
46
+ def test_ineligible_falls_back_silently(packed: Packed, recwarn: pytest.WarningsRecorder) -> None:
47
+ """A plain CPU/float32 query is the expected fallback route — None, and no warning."""
48
+ out = _attempt(packed)
49
+ assert out is None
50
+ assert len(recwarn) == 0
51
+
52
+
53
+ def test_unavailable_kernel_warns(
54
+ packed: Packed, force_eligible: None, monkeypatch: pytest.MonkeyPatch
55
+ ) -> None:
56
+ """An eligible query with no imported kernel falls back and reports the import reason."""
57
+ monkeypatch.setattr(vb, "_varlen_attn", None)
58
+ monkeypatch.setattr(vb, "_import_error", "varlen_attn could not be imported (no module)")
59
+ with pytest.warns(UserWarning, match="unavailable"):
60
+ out = _attempt(packed)
61
+ assert out is None
62
+
63
+
64
+ def test_attention_bias_warns(
65
+ packed: Packed, force_eligible: None, monkeypatch: pytest.MonkeyPatch
66
+ ) -> None:
67
+ """varlen_attn has no bias slot: an eligible query with a bias falls back with a warning."""
68
+ monkeypatch.setattr(vb, "_varlen_attn", lambda **kw: torch.zeros(NT, H, DH))
69
+ bias = torch.zeros(1, 1, NT, NT)
70
+ with pytest.warns(UserWarning, match="attention bias"):
71
+ out = _attempt(packed, bias=bias)
72
+ assert out is None
73
+
74
+
75
+ def test_signature_error_warns(
76
+ packed: Packed, force_eligible: None, monkeypatch: pytest.MonkeyPatch
77
+ ) -> None:
78
+ """A changed experimental signature raises TypeError, which is caught and falls back."""
79
+
80
+ def renamed_kwarg(**kw: object) -> torch.Tensor:
81
+ raise TypeError("unexpected keyword argument 'cu_seq_q'")
82
+
83
+ monkeypatch.setattr(vb, "_varlen_attn", renamed_kwarg)
84
+ with pytest.warns(UserWarning, match="call failed"):
85
+ out = _attempt(packed)
86
+ assert out is None
87
+
88
+
89
+ def test_runtime_error_warns(
90
+ packed: Packed, force_eligible: None, monkeypatch: pytest.MonkeyPatch
91
+ ) -> None:
92
+ """An unsupported-GPU RuntimeError from the call is caught and falls back."""
93
+
94
+ def unsupported(**kw: object) -> torch.Tensor:
95
+ raise RuntimeError("varlen_attn requires compute capability >= 8.0")
96
+
97
+ monkeypatch.setattr(vb, "_varlen_attn", unsupported)
98
+ with pytest.warns(UserWarning, match="call failed"):
99
+ out = _attempt(packed)
100
+ assert out is None
101
+
102
+
103
+ def test_non_tensor_return_warns(
104
+ packed: Packed, force_eligible: None, monkeypatch: pytest.MonkeyPatch
105
+ ) -> None:
106
+ """A changed return contract (non-Tensor) falls back rather than propagating bad data."""
107
+ monkeypatch.setattr(vb, "_varlen_attn", lambda **kw: ("not", "a", "tensor"))
108
+ with pytest.warns(UserWarning, match="expected Tensor"):
109
+ out = _attempt(packed)
110
+ assert out is None
111
+
112
+
113
+ def test_success_returns_kernel_tensor(
114
+ packed: Packed, force_eligible: None, monkeypatch: pytest.MonkeyPatch
115
+ ) -> None:
116
+ """The happy path returns the kernel's tensor unchanged and emits no warning."""
117
+ expected = torch.randn(NT, H, DH)
118
+ monkeypatch.setattr(vb, "_varlen_attn", lambda **kw: expected)
119
+ with warnings.catch_warnings():
120
+ warnings.simplefilter("error")
121
+ out = _attempt(packed)
122
+ assert out is expected
@@ -125,21 +125,176 @@ def test_rope1d_preserves_norms(
125
125
  assert torch.allclose(k.norm(dim=-1), k_out.norm(dim=-1), atol=tol)
126
126
 
127
127
 
128
+ # --- RoPE-2D ---
129
+ #
130
+ # A row-major GH x GW grid, never row == col. On the diagonal (row == col) the row and column
131
+ # angles coincide, which makes a broken frequency layout indistinguishable from a correct one.
132
+
133
+ GH, GW = 3, 5
134
+ GN = GH * GW
135
+
136
+
137
+ def _grid_positions(b: int, device: torch.device, dtype: torch.dtype) -> torch.Tensor:
138
+ """Row-major (row, col) positions over a GH x GW grid, as (b, GN, 2)."""
139
+ rows = torch.arange(GH, device=device, dtype=dtype).repeat_interleave(GW)
140
+ cols = torch.arange(GW, device=device, dtype=dtype).repeat(GH)
141
+ return torch.stack([rows, cols], dim=-1).unsqueeze(0).expand(b, -1, -1).clone()
142
+
143
+
144
+ def _reference_rope2d(t: torch.Tensor, positions: torch.Tensor, base: int = 10_000) -> torch.Tensor:
145
+ """Axial 2-D RoPE written directly from the definition, independent of the implementation.
146
+
147
+ Rotates channel pair (i, i + dh/2) by row * w_i for the first dh/4 pairs and by col * w_i
148
+ for the rest. t: (b, h, n, dh), positions: (b, n, 2).
149
+ """
150
+ dh = t.shape[-1]
151
+ half, quarter = dh // 2, dh // 4
152
+ inv = 1.0 / (base ** (torch.arange(0, half, 2, dtype=torch.float32) / half))
153
+ inv = inv.to(device=t.device)
154
+
155
+ out = torch.zeros_like(t, dtype=torch.float32)
156
+ src = t.float()
157
+ for i in range(half):
158
+ axis = 0 if i < quarter else 1
159
+ freq = inv[i if i < quarter else i - quarter]
160
+ angle = positions[..., axis].float() * freq # (b, n)
161
+ cos, sin = angle.cos().unsqueeze(1), angle.sin().unsqueeze(1) # (b, 1, n)
162
+ x, y = src[..., i], src[..., i + half]
163
+ out[..., i] = x * cos - y * sin
164
+ out[..., i + half] = x * sin + y * cos
165
+ return out.to(t.dtype)
166
+
167
+
168
+ @pytest.fixture
169
+ def grid_qk(device_dtype: tuple[torch.device, torch.dtype]) -> tuple[torch.Tensor, torch.Tensor]:
170
+ device, dtype = device_dtype
171
+ return (
172
+ torch.randn(B, H, GN, DH, device=device, dtype=dtype),
173
+ torch.randn(B, H, GN, DH, device=device, dtype=dtype),
174
+ )
175
+
176
+
177
+ @pytest.fixture
178
+ def grid_pos(device_dtype: tuple[torch.device, torch.dtype]) -> torch.Tensor:
179
+ device, dtype = device_dtype
180
+ return _grid_positions(B, device, dtype)
181
+
182
+
128
183
  def test_rope2d_output_shape(
129
184
  rope2d: RotaryEmbedding2D,
130
- device_dtype: tuple[torch.device, torch.dtype],
185
+ grid_qk: tuple[torch.Tensor, torch.Tensor],
186
+ grid_pos: torch.Tensor,
131
187
  ) -> None:
132
- device, dtype = device_dtype
133
- q = torch.randn(B, H, N, DH, device=device, dtype=dtype)
134
- k = torch.randn(B, H, N, DH, device=device, dtype=dtype)
135
- row_ids = torch.arange(N, dtype=dtype, device=device)
136
- col_ids = torch.arange(N, dtype=dtype, device=device)
137
- pos = torch.stack([row_ids, col_ids], dim=-1).unsqueeze(0).expand(B, -1, -1) # b n 2
138
- q_out, k_out = rope2d.forward_padded(q, k, pos, pos)
188
+ q, k = grid_qk
189
+ q_out, k_out = rope2d.forward_padded(q, k, grid_pos, grid_pos)
139
190
  assert q_out.shape == q.shape
140
191
  assert k_out.shape == k.shape
141
192
 
142
193
 
194
+ def test_rope2d_matches_reference_rotation(
195
+ rope2d: RotaryEmbedding2D,
196
+ grid_qk: tuple[torch.Tensor, torch.Tensor],
197
+ grid_pos: torch.Tensor,
198
+ device_dtype: tuple[torch.device, torch.dtype],
199
+ ) -> None:
200
+ """Pins the exact rotation against a definition-first oracle, not just its properties."""
201
+ _, dtype = device_dtype
202
+ q, k = grid_qk
203
+ q_out, k_out = rope2d.forward_padded(q, k, grid_pos, grid_pos)
204
+ assert torch.allclose(q_out, _reference_rope2d(q, grid_pos), atol=atol(dtype))
205
+ assert torch.allclose(k_out, _reference_rope2d(k, grid_pos), atol=atol(dtype))
206
+
207
+
208
+ def test_rope2d_is_orthogonal(
209
+ rope2d: RotaryEmbedding2D,
210
+ grid_qk: tuple[torch.Tensor, torch.Tensor],
211
+ grid_pos: torch.Tensor,
212
+ device_dtype: tuple[torch.device, torch.dtype],
213
+ ) -> None:
214
+ """A rotation preserves norms and inner products; a squeeze or reflection does not."""
215
+ _, dtype = device_dtype
216
+ q, k = grid_qk
217
+ q_out, k_out = rope2d.forward_padded(q, k, grid_pos, grid_pos)
218
+ tol = atol(dtype)
219
+ assert torch.allclose(q.norm(dim=-1), q_out.norm(dim=-1), atol=tol)
220
+ assert torch.allclose(k.norm(dim=-1), k_out.norm(dim=-1), atol=tol)
221
+ # Same position for q and k, so the shared rotation must cancel in the inner product.
222
+ before = (q.float() * k.float()).sum(dim=-1)
223
+ after = (q_out.float() * k_out.float()).sum(dim=-1)
224
+ assert torch.allclose(before, after, atol=tol * DH)
225
+
226
+
227
+ @pytest.mark.parametrize("offset", [(0, 1), (1, 0), (2, 3), (-1, 2)], ids=str)
228
+ def test_rope2d_score_depends_only_on_relative_offset(
229
+ device: torch.device,
230
+ offset: tuple[int, int],
231
+ ) -> None:
232
+ """The defining property: sliding a query/key pair across the grid must not move the score."""
233
+ rope = RotaryEmbedding2D(RoPE2DConfig(dim_head=DH)).to(device=device)
234
+ q = torch.randn(1, H, 1, DH, device=device)
235
+ k = torch.randn(1, H, 1, DH, device=device)
236
+ d_row, d_col = offset
237
+
238
+ def score(row: int, col: int) -> torch.Tensor:
239
+ q_pos = torch.tensor([[[float(row), float(col)]]], device=device)
240
+ k_pos = torch.tensor([[[float(row + d_row), float(col + d_col)]]], device=device)
241
+ q_out, k_out = rope.forward_padded(q, k, q_pos, k_pos)
242
+ return (q_out @ k_out.transpose(-1, -2))[0, :, 0, 0]
243
+
244
+ anchor = score(0, 0)
245
+ for row, col in [(2, 3), (5, 9), (11, 4), (7, 7)]:
246
+ assert torch.allclose(anchor, score(row, col), atol=atol(torch.float32) * 10)
247
+
248
+
249
+ def test_rope2d_distinct_offsets_give_distinct_scores(device: torch.device) -> None:
250
+ """Guards the degenerate fix where every offset collapses to the same score."""
251
+ rope = RotaryEmbedding2D(RoPE2DConfig(dim_head=DH)).to(device=device)
252
+ q = torch.randn(1, H, 1, DH, device=device)
253
+ k = torch.randn(1, H, 1, DH, device=device)
254
+
255
+ def score(k_row: float, k_col: float) -> torch.Tensor:
256
+ q_pos = torch.zeros(1, 1, 2, device=device)
257
+ k_pos = torch.tensor([[[k_row, k_col]]], device=device)
258
+ q_out, k_out = rope.forward_padded(q, k, q_pos, k_pos)
259
+ return (q_out @ k_out.transpose(-1, -2))[0, :, 0, 0]
260
+
261
+ # A row-offset and the matching col-offset must not be conflated: the axes are separate.
262
+ assert not torch.allclose(score(2.0, 0.0), score(0.0, 2.0))
263
+ assert not torch.allclose(score(0.0, 0.0), score(1.0, 1.0))
264
+
265
+
266
+ @pytest.mark.parametrize("axis", [0, 1], ids=["row", "col"])
267
+ def test_rope2d_each_axis_changes_the_encoding(
268
+ rope2d: RotaryEmbedding2D,
269
+ device_dtype: tuple[torch.device, torch.dtype],
270
+ axis: int,
271
+ ) -> None:
272
+ """Moving along either axis alone must change the output — neither axis may be ignored."""
273
+ device, dtype = device_dtype
274
+ q = torch.randn(1, H, 1, DH, device=device, dtype=dtype)
275
+ base_pos = torch.full((1, 1, 2), 2.0, device=device, dtype=dtype)
276
+ moved_pos = base_pos.clone()
277
+ moved_pos[..., axis] += 3.0
278
+ base_out, _ = rope2d.forward_padded(q, q, base_pos, base_pos)
279
+ moved_out, _ = rope2d.forward_padded(q, q, moved_pos, moved_pos)
280
+ assert not torch.allclose(base_out, moved_out, atol=atol(dtype))
281
+
282
+
283
+ def test_rope2d_packed_matches_padded(
284
+ rope2d: RotaryEmbedding2D,
285
+ device_dtype: tuple[torch.device, torch.dtype],
286
+ ) -> None:
287
+ """Both layouts are the same per-token operation and must agree token for token."""
288
+ device, dtype = device_dtype
289
+ q = torch.randn(1, H, GN, DH, device=device, dtype=dtype)
290
+ pos = _grid_positions(1, device, dtype)
291
+ padded, _ = rope2d.forward_padded(q, q, pos, pos)
292
+
293
+ packed_q = q[0].transpose(0, 1).contiguous() # (nt, h, dh)
294
+ packed_out, _ = rope2d.forward_packed(packed_q, packed_q, pos[0], pos[0])
295
+ assert torch.allclose(packed_out, padded[0].transpose(0, 1), atol=atol(dtype))
296
+
297
+
143
298
  # --- YaRN scaling ---
144
299
 
145
300
  _YARN = YaRNConfig(scale=4.0, original_max_seq_len=512)
@@ -811,7 +811,7 @@ wheels = [
811
811
 
812
812
  [[package]]
813
813
  name = "stackformers"
814
- version = "3.9.0"
814
+ version = "3.9.2"
815
815
  source = { editable = "." }
816
816
  dependencies = [
817
817
  { name = "beartype" },
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