ssi-analysis-result-parsers 0.0.7__tar.gz → 0.0.8__tar.gz

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  1. {ssi_analysis_result_parsers-0.0.7/ssi_analysis_result_parsers.egg-info → ssi_analysis_result_parsers-0.0.8}/PKG-INFO +1 -1
  2. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/settings.ini +1 -1
  3. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers/Spyogenes_parser.py +16 -16
  4. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8/ssi_analysis_result_parsers.egg-info}/PKG-INFO +1 -1
  5. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers.egg-info/SOURCES.txt +1 -0
  6. ssi_analysis_result_parsers-0.0.8/test_input/Spyogenes/emm_typing/test6.emm.blast.tsv +45 -0
  7. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/LICENSE +0 -0
  8. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/MANIFEST.in +0 -0
  9. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/README.md +0 -0
  10. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/pyproject.toml +0 -0
  11. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/setup.cfg +0 -0
  12. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/setup.py +0 -0
  13. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers/Legionella_parser.py +0 -0
  14. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers/__init__.py +0 -0
  15. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers/_modidx.py +0 -0
  16. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers/blast_parser.py +0 -0
  17. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers/config/config.default.env +0 -0
  18. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers/config/config.default.yaml +0 -0
  19. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers/core.py +0 -0
  20. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers/hello_world.py +0 -0
  21. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers/some_string.py +0 -0
  22. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers.egg-info/dependency_links.txt +0 -0
  23. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers.egg-info/entry_points.txt +0 -0
  24. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers.egg-info/not-zip-safe +0 -0
  25. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers.egg-info/requires.txt +0 -0
  26. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers.egg-info/top_level.txt +0 -0
  27. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/.DS_Store +0 -0
  28. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Legionella/batch_parser_file_paths.tsv +0 -0
  29. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Legionella/lag-1_blast.tsv +0 -0
  30. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Legionella/lag-1_blast_2.tsv +0 -0
  31. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Legionella/test.sbt.tsv +0 -0
  32. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Legionella/test2.sbt.tsv +0 -0
  33. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Spyogenes/batch_parser_file_paths.tsv +0 -0
  34. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Spyogenes/emm_typing/Mga.fasta +0 -0
  35. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Spyogenes/emm_typing/emm_clusters.txt +0 -0
  36. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Spyogenes/emm_typing/test1.emm.blast.tsv +0 -0
  37. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Spyogenes/emm_typing/test1.mga.blast.tsv +0 -0
  38. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Spyogenes/emm_typing/test2.emm.blast.tsv +0 -0
  39. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Spyogenes/emm_typing/test2.mga.blast.tsv +0 -0
  40. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Spyogenes/emm_typing/test3.emm.blast.tsv +0 -0
  41. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Spyogenes/emm_typing/test4.emm.blast.tsv +0 -0
  42. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/Spyogenes/emm_typing/test5.emm.blast.tsv +0 -0
  43. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/blast_parser/allele_matches_test.tsv +0 -0
  44. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/blast_parser/empty_gene_presence_absense_test.tsv +0 -0
  45. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/blast_parser/gene_presence_absence_test.tsv +0 -0
  46. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_input/empty_file.txt +0 -0
  47. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_output/output_with_sample_name.tsv +0 -0
  48. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_output/test.tsv +0 -0
  49. {ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/test_output/test_batch_output.tsv +0 -0
{ssi_analysis_result_parsers-0.0.7/ssi_analysis_result_parsers.egg-info → ssi_analysis_result_parsers-0.0.8}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: ssi_analysis_result_parsers
3
- Version: 0.0.7
3
+ Version: 0.0.8
4
4
  Summary: TODO
5
5
  Home-page: https://github.com/thej-ssi/ssi_analysis_result_parsers
6
6
  Author: Thor Bech Johannesen
{ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/settings.ini RENAMED
@@ -5,7 +5,7 @@
5
5
  ### Python library ###
6
6
  repo = ssi_analysis_result_parsers
7
7
  lib_name = %(repo)s
8
- version = 0.0.7
8
+ version = 0.0.8
9
9
  min_python = 3.9
10
10
  license = MIT
11
11
  black_formatting = True
{ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers/Spyogenes_parser.py RENAMED
@@ -85,6 +85,7 @@ def extract_emm_type(emm_blast_tsv: Path):
85
85
  .groupby("extended_sstart")
86
86
  .first()
87
87
  )
88
+ print(blast_df_unique)
88
89
  if blast_df_unique.shape[0] == 1:
89
90
  emm_typing_results["EMM_type"] = blast_df_unique.iloc[0]["qseqid"][3:]
90
91
  if (
@@ -122,17 +123,16 @@ def extract_emm_type(emm_blast_tsv: Path):
122
123
  notes.append(
123
124
  f"ENN{blast_df_unique.iloc[1]['qseqid'][3:]} with pident {round(blast_df_unique.iloc[1]['pident'],2)} and length {blast_df_unique.iloc[1]['length']}/{blast_df_unique.iloc[1]['qlen']}"
124
125
  )
125
-
126
- emm_maintype = blast_df_unique.iloc[0]["qseqid"][3:].split(".")[0]
127
- mrp_maintype = blast_df_unique.iloc[1]["qseqid"][3:].split(".")[0]
128
- if (
129
- mrp_maintype in emm_types_in_emm_plus_mrp_operons
130
- or emm_maintype in mrp_types_in_emm_plus_mrp_operons
131
- ):
132
- emm_typing_results["MRP_type"] = emm_typing_results["EMM_type"]
133
- emm_typing_results["EMM_type"] = emm_typing_results["ENN_type"]
134
- emm_typing_results["ENN_type"] = "-"
135
- notes.append(f"EMM redesignated due to known MRP+EMM operon")
126
+ emm_maintype = blast_df_unique.iloc[0]["qseqid"][3:].split(".")[0]
127
+ mrp_maintype = blast_df_unique.iloc[1]["qseqid"][3:].split(".")[0]
128
+ if (
129
+ mrp_maintype in emm_types_in_emm_plus_mrp_operons
130
+ or emm_maintype in mrp_types_in_emm_plus_mrp_operons
131
+ ):
132
+ emm_typing_results["MRP_type"] = emm_typing_results["EMM_type"]
133
+ emm_typing_results["EMM_type"] = emm_typing_results["ENN_type"]
134
+ emm_typing_results["ENN_type"] = "-"
135
+ notes.append(f"EMM redesignated due to known MRP+EMM operon")
136
136
 
137
137
  elif blast_df_unique.shape[0] == 3:
138
138
  emm_typing_results["MRP_type"] = blast_df_unique.iloc[0]["qseqid"][3:]
@@ -176,7 +176,7 @@ class SpyogenesResults(core.PipelineResults):
176
176
  def from_tool_paths(cls, emm_blast_tsv: Path, sample_name=None):
177
177
  """
178
178
  Alternative constructor for initializing results for single sample,
179
- Initializes LegionellaResults instance provided paths to outputs from tools (legionella sbt and lag1 presence blast)
179
+ Initializes SpyogenesResults instance provided paths to outputs from tools (legionella sbt and lag1 presence blast)
180
180
  """
181
181
  gas_results = cls.summary(emm_blast_tsv=emm_blast_tsv)
182
182
  return cls({sample_name: gas_results})
@@ -185,7 +185,7 @@ class SpyogenesResults(core.PipelineResults):
185
185
  def from_tool_paths_dict(cls, file_paths: dict):
186
186
  """
187
187
  Alternative constructor for initializing results for multiple samples,
188
- Initializes LegionellaResults instance by providing a dictionary of paths to outputs from tools (legionella sbt and lag1 presence blast)
188
+ Initializes SpyogenesResults instance by providing a dictionary of paths to outputs from tools (legionella sbt and lag1 presence blast)
189
189
  """
190
190
  results_dict = {}
191
191
  for sample_name, path_dict in file_paths.items():
@@ -197,7 +197,7 @@ class SpyogenesResults(core.PipelineResults):
197
197
  def from_tool_paths_dataframe(cls, file_paths_df: pandas.DataFrame):
198
198
  """
199
199
  Alternative constructor for initializing results for multiple samples,
200
- Initializes LegionellaResults instance by providing a DataFrame of paths to outputs from tools (legionella sbt and lag1 presence blast)
200
+ Initializes SpyogenesResults instance by providing a DataFrame of paths to outputs from tools (legionella sbt and lag1 presence blast)
201
201
  """
202
202
  file_paths = file_paths_df.to_dict(orient="index")
203
203
  results_dict = {}
@@ -210,7 +210,7 @@ class SpyogenesResults(core.PipelineResults):
210
210
  def from_tool_paths_tsv(cls, tool_paths_tsv: Path):
211
211
  """
212
212
  Alternative constructor for initializing results for multiple samples,
213
- Initializes LegionellaResults instance by providing a tsv-file with paths to outputs from tools (legionella sbt and lag1 presence blast)
213
+ Initializes SpyogenesResults instance by providing a tsv-file with paths to outputs from tools (legionella sbt and lag1 presence blast)
214
214
  """
215
215
  file_paths_df = pandas.read_csv(tool_paths_tsv, sep="\t")
216
216
  file_paths_df.set_index("sample_name", inplace=True, drop=True)
@@ -226,7 +226,7 @@ class SpyogenesResults(core.PipelineResults):
226
226
  return results_dict
227
227
 
228
228
  def __repr__(self):
229
- return f"< Legionella analysis results object. {len(self.results_df)} samples with {len(self.results_df.columns)} result variables > "
229
+ return f"< Spyogenes analysis results object. {len(self.results_df)} samples with {len(self.results_df.columns)} result variables > "
230
230
 
231
231
  # %% ../nbs/31_Spyogenes_parser.ipynb 9
232
232
  @call_parse
{ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8/ssi_analysis_result_parsers.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: ssi_analysis_result_parsers
3
- Version: 0.0.7
3
+ Version: 0.0.8
4
4
  Summary: TODO
5
5
  Home-page: https://github.com/thej-ssi/ssi_analysis_result_parsers
6
6
  Author: Thor Bech Johannesen
{ssi_analysis_result_parsers-0.0.7 → ssi_analysis_result_parsers-0.0.8}/ssi_analysis_result_parsers.egg-info/SOURCES.txt RENAMED
@@ -38,6 +38,7 @@ test_input/Spyogenes/emm_typing/test2.mga.blast.tsv
38
38
  test_input/Spyogenes/emm_typing/test3.emm.blast.tsv
39
39
  test_input/Spyogenes/emm_typing/test4.emm.blast.tsv
40
40
  test_input/Spyogenes/emm_typing/test5.emm.blast.tsv
41
+ test_input/Spyogenes/emm_typing/test6.emm.blast.tsv
41
42
  test_input/blast_parser/allele_matches_test.tsv
42
43
  test_input/blast_parser/empty_gene_presence_absense_test.tsv
43
44
  test_input/blast_parser/gene_presence_absence_test.tsv
ssi_analysis_result_parsers-0.0.8/test_input/Spyogenes/emm_typing/test6.emm.blast.tsv ADDED
@@ -0,0 +1,45 @@
1
+ EMM156.0 GAS-2025-0367_2_61.3538 85.556 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCATG---TTGATGTTGTGCTT-T-C-AGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 5.79e-46 178
2
+ EMM156.1 GAS-2025-0367_2_61.3538 85.000 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCA--TG-TTGAT-GT-TG-TGCTTTCAGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 2.69e-44 172
3
+ EMM156.2 GAS-2025-0367_2_61.3538 86.111 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCA--TG-TTGAT-GT-TG-TGCTTTCAGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 1.24e-47 183
4
+ EMM156.3 GAS-2025-0367_2_61.3538 85.556 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCA--TG-TTGAT-GT-TG-TGCTTTCAGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 5.79e-46 178
5
+ EMM156.4 GAS-2025-0367_2_61.3538 85.000 180 180 1 180 200941 201108 GGATTAGCAAACACAACTGATGTAAAGGCTGAGA--C-T-G--AGCA--TG-TTGAT-GT-TG-TGCTTTCAGCAAAAGAAGCTAACAAAGTATTCGAAGAGCGCAAAGCCTTGGAAAAACAAGCGCGTGATTTGGGTGACACTATTAATCACATGTCACAAACCATTAGTGAGCAAAGC 2.69e-44 172
6
+ EMM203.3 GAS-2025-0367_2_61.3538 96.111 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 5.51e-81 294
7
+ EMM203.4 GAS-2025-0367_2_61.3538 96.667 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 1.18e-82 300
8
+ EMM203.5 GAS-2025-0367_2_61.3538 93.333 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 1.20e-72 267
9
+ EMM236.0 GAS-2025-0367_2_61.3538 93.333 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 1.20e-72 267
10
+ EMM236.1 GAS-2025-0367_2_61.3538 93.889 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 2.58e-74 272
11
+ EMM236.3 GAS-2025-0367_2_61.3538 93.889 180 180 1 180 203502 203681 GGTTTTGCAAACCAAACGGAAGTAAGAGCTGAAGGGGTAAACCCGACTACGAACTTGCCAGAGAAGGCTAAATATGCCGCAGTGAAAGATGAGAATACTGGTTTACGTGGTGATCAGAAAAAATTAGTAAAAAAACTTGAAGAAGAACAAGAGAAGAGCAAAAATCTAGAAAAGCAAAAA 2.58e-74 272
12
+ EMM28.0 GAS-2025-0367_2_61.3538 100.000 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 1.17e-92 333
13
+ EMM28.1 GAS-2025-0367_2_61.3538 98.788 165 180 1 165 202215 202379 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAA 5.51e-81 294
14
+ EMM28.10 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
15
+ EMM28.11 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
16
+ EMM28.12 GAS-2025-0367_2_61.3538 98.333 180 180 1 180 202215 202391 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTA---AAGAAGAAGAACCTAGGTATAAA 1.52e-86 313
17
+ EMM28.13 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
18
+ EMM28.14 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
19
+ EMM28.15 GAS-2025-0367_2_61.3538 98.333 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 1.18e-87 316
20
+ EMM28.16 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
21
+ EMM28.17 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
22
+ EMM28.18 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
23
+ EMM28.19 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
24
+ EMM28.2 GAS-2025-0367_2_61.3538 99.390 164 180 1 164 202215 202378 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGA 4.26e-82 298
25
+ EMM28.20 GAS-2025-0367_2_61.3538 98.889 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 2.53e-89 322
26
+ EMM28.21 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
27
+ EMM28.22 GAS-2025-0367_2_61.3538 98.765 162 180 1 162 202215 202376 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAA 2.56e-79 289
28
+ EMM28.23 GAS-2025-0367_2_61.3538 98.889 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 2.53e-89 322
29
+ EMM28.24 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
30
+ EMM28.25 GAS-2025-0367_2_61.3538 100.000 175 180 1 175 202215 202389 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATA 7.02e-90 324
31
+ EMM28.26 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
32
+ EMM28.27 GAS-2025-0367_2_61.3538 98.889 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 2.53e-89 322
33
+ EMM28.28 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
34
+ EMM28.29 GAS-2025-0367_2_61.3538 98.361 183 180 1 180 202215 202397 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCATTG 3.27e-88 318
35
+ EMM28.3 GAS-2025-0367_2_61.3538 99.394 165 180 1 165 202215 202379 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAA 1.18e-82 300
36
+ EMM28.30 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
37
+ EMM28.31 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
38
+ EMM28.32 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
39
+ EMM28.33 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
40
+ EMM28.4 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
41
+ EMM28.5 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
42
+ EMM28.6 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
43
+ EMM28.7 GAS-2025-0367_2_61.3538 99.383 162 180 1 162 202215 202376 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAA 5.51e-81 294
44
+ EMM28.8 GAS-2025-0367_2_61.3538 99.444 180 180 1 180 202215 202394 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCTAAAGAAGAAGAACCTAGGTATAAAGCA 5.43e-91 327
45
+ EMM28.9 GAS-2025-0367_2_61.3538 98.333 180 180 1 180 202215 202391 GGCTTTGCAAACCAAACAGAAGTTAAGGCTGCGGAGTCTCCAAAAAGTACTGAGACTTCTGCTAATGGAGCTGATAAATTAGCTGATGCATACAACACATTGCTTACTGAACATGAGAAACTCAGAGATGAGTATTATACATTAATTGATGCT---AAAGAAGAAGAACCTAGGTATAAA 1.52e-86 313