spymot 2.1.2.dev0__tar.gz → 2.1.2.dev2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. spymot-2.1.2.dev2/.api_token_fix +0 -0
  2. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/.github/workflows/publish.yml +4 -5
  3. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/PKG-INFO +1 -1
  4. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot/_version.py +3 -3
  5. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot.egg-info/PKG-INFO +1 -1
  6. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot.egg-info/SOURCES.txt +1 -0
  7. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/.github/workflows/github-packages.yml +0 -0
  8. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/.gitignore +0 -0
  9. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/CHANGELOG.md +0 -0
  10. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/LICENSE +0 -0
  11. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/MANIFEST.in +0 -0
  12. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/README.md +0 -0
  13. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/__pycache__/context_aware_detector.cpython-312.pyc +0 -0
  14. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/__pycache__/enhanced_analyzer.cpython-312.pyc +0 -0
  15. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/__pycache__/enhanced_demo.cpython-312.pyc +0 -0
  16. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/__pycache__/enhanced_motifs_db.cpython-312.pyc +0 -0
  17. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/__pycache__/external_tools.cpython-312.pyc +0 -0
  18. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/pyproject.toml +0 -0
  19. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/setup.cfg +0 -0
  20. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot/__init__.py +0 -0
  21. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot/cli.py +0 -0
  22. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot/v1/__init__.py +0 -0
  23. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot/v1/cli.py +0 -0
  24. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot/v2/__init__.py +0 -0
  25. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot/v2/scripts/__init__.py +0 -0
  26. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot/v2/scripts/enhanced_cli.py +0 -0
  27. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot/v2/scripts/enhanced_demo.py +0 -0
  28. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot/v2/scripts/interactive_cli.py +0 -0
  29. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot.egg-info/dependency_links.txt +0 -0
  30. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot.egg-info/entry_points.txt +0 -0
  31. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot.egg-info/requires.txt +0 -0
  32. {spymot-2.1.2.dev0 → spymot-2.1.2.dev2}/src/spymot.egg-info/top_level.txt +0 -0
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@@ -137,8 +137,6 @@ jobs:
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  (github.event_name == 'workflow_dispatch' &&
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  github.event.inputs.publish_to_testpypi == 'true') ||
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  startsWith(github.ref, 'refs/tags/v')
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- permissions:
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- id-token: write # IMPORTANT: this permission is mandatory for trusted publishing
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  steps:
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  - name: Download artifacts
@@ -156,6 +154,7 @@ jobs:
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  uses: pypa/gh-action-pypi-publish@release/v1
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  with:
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  repository-url: https://test.pypi.org/legacy/
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+ password: ${{ secrets.TEST_PYPI_API_TOKEN }}
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  publish-pypi:
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  needs: build
@@ -165,8 +164,6 @@ jobs:
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  (github.event_name == 'workflow_dispatch' &&
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  github.event.inputs.publish_to_pypi == 'true') ||
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  startsWith(github.ref, 'refs/tags/v')
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- permissions:
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- id-token: write # IMPORTANT: this permission is mandatory for trusted publishing
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  steps:
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  - name: Download artifacts
@@ -181,4 +178,6 @@ jobs:
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  python-version: '3.11'
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  - name: Publish to PyPI
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- uses: pypa/gh-action-pypi-publish@release/v1
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+ uses: pypa/gh-action-pypi-publish@release/v1
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+ with:
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+ password: ${{ secrets.PYPI_API_TOKEN }}
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: spymot
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- Version: 2.1.2.dev0
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+ Version: 2.1.2.dev2
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  Summary: Advanced Protein Motif Detection with AlphaFold Structural Validation
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  Author-email: Erfan Zohrabi <erfanzohrabi.ez@gmail.com>
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  Maintainer-email: Erfan Zohrabi <erfanzohrabi.ez@gmail.com>
@@ -28,7 +28,7 @@ version_tuple: VERSION_TUPLE
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  commit_id: COMMIT_ID
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  __commit_id__: COMMIT_ID
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- __version__ = version = '2.1.2.dev0'
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- __version_tuple__ = version_tuple = (2, 1, 2, 'dev0')
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+ __version__ = version = '2.1.2.dev2'
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+ __version_tuple__ = version_tuple = (2, 1, 2, 'dev2')
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- __commit_id__ = commit_id = 'g373af95ac'
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+ __commit_id__ = commit_id = 'g450903486'
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: spymot
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- Version: 2.1.2.dev0
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+ Version: 2.1.2.dev2
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  Summary: Advanced Protein Motif Detection with AlphaFold Structural Validation
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  Author-email: Erfan Zohrabi <erfanzohrabi.ez@gmail.com>
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  Maintainer-email: Erfan Zohrabi <erfanzohrabi.ez@gmail.com>
@@ -1,3 +1,4 @@
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+ .api_token_fix
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  .gitignore
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  CHANGELOG.md
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  LICENSE
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