splinekit 0.2.4__tar.gz → 0.2.5__tar.gz

{splinekit-0.2.4 → splinekit-0.2.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: splinekit
-Version: 0.2.4
+Version: 0.2.5
 Summary: A set of functions and classes to handle periodic 1D polynomial splines
 Author-Email: =?utf-8?q?Philippe_Th=C3=A9venaz?= <philippe.thevenaz@icloud.com>
 Maintainer-Email: =?utf-8?q?Philippe_Th=C3=A9venaz?= <philippe.thevenaz@icloud.com>
@@ -54,7 +54,7 @@ Description-Content-Type: text/markdown
 # splinekit: Spline Operations
 `splinekit` is a Python-based open-source software library aimed at the manipulation of one-dimensional periodic splines.
 
-| ***<div style="background-color:aliceblue">&#160;&#160;Full documentation at https://splinekit.github.io/ &#160;&#160;</div>*** |
+| ***<div style="background-color:aliceblue">&#160;&#160;Full documentation at [https://splinekit.github.io/](https://splinekit.github.io/) &#160;&#160;</div>*** |
 | - |
 
 ## Installation
@@ -121,4 +121,7 @@ First stable version. Pure Python.
 Same API as 0.1.0. Ansi-C dynamic library.
 
 ### 0.2.2 — 0.2.4
-Some demos added
+Some demos added.
+
+### 0.2.5
+Minor debug of least-significant-bit edge cases.

{splinekit-0.2.4 → splinekit-0.2.5}/README.md

@@ -3,7 +3,7 @@
 # splinekit: Spline Operations
 `splinekit` is a Python-based open-source software library aimed at the manipulation of one-dimensional periodic splines.
 
-| ***<div style="background-color:aliceblue">&#160;&#160;Full documentation at https://splinekit.github.io/ &#160;&#160;</div>*** |
+| ***<div style="background-color:aliceblue">&#160;&#160;Full documentation at [https://splinekit.github.io/](https://splinekit.github.io/) &#160;&#160;</div>*** |
 | - |
 
 ## Installation
@@ -70,4 +70,7 @@ First stable version. Pure Python.
 Same API as 0.1.0. Ansi-C dynamic library.
 
 ### 0.2.2 — 0.2.4
-Some demos added
+Some demos added.
+
+### 0.2.5
+Minor debug of least-significant-bit edge cases.

splinekit-0.2.5/dev/Jupyter/padding_bases.ipynb

@@ -0,0 +1,335 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "id": "02240a05-3526-4530-ae12-d9522465b594",
+   "metadata": {},
+   "source": [
+    "# Padded Splines\n",
+    "The data samples are represented with circles. The first sample, as well as its replicates when the padding is globally periodic, is indicated by a red stem line. The portion of curve in thick green is tied to the observed data, with a number of samples that can be specified. The portion of curve in thick blue is the complement to a full period."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "id": "230ca8a8-c806-4207-b416-9954d55f1377",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "application/vnd.jupyter.widget-view+json": {
+       "model_id": "9049773b238948f1b9b1057e21a9087b",
+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": [
+       "interactive(children=(IntSlider(value=3, description='degree', max=9), IntSlider(value=6, description='samples…"
+      ]
+     },
+     "execution_count": 1,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "# Load the required libraries\n",
+    "import ipywidgets as widgets\n",
+    "import matplotlib.pyplot as plt\n",
+    "import numpy as np\n",
+    "\n",
+    "import splinekit as sk # This library\n",
+    "\n",
+    "# Setup\n",
+    "max_degree = 9 # Maximal spline degree\n",
+    "max_samples = 12 # Maximal support\n",
+    "\n",
+    "# Initial random periodic cubic spline\n",
+    "s0 = sk.PeriodicSpline1D.from_spline_coeff(np.random.standard_normal(6), degree = 3)\n",
+    "\n",
+    "# Plot\n",
+    "def update_plot (\n",
+    "    degree = 3,\n",
+    "    samples = 6,\n",
+    "    basis = 0\n",
+    "):\n",
+    "    global s0\n",
+    "\n",
+    "    # Update of the spline\n",
+    "    f = s0.get_samples(0, support_length = s0.period)\n",
+    "    if s0.period < samples:\n",
+    "        f = np.append(f, np.random.standard_normal(samples - len(f)))\n",
+    "    else:\n",
+    "        f = f[ : samples]\n",
+    "    s0 = sk.PeriodicSpline1D.from_samples(f, degree = degree)\n",
+    "\n",
+    "    # Decomposition according to the basis\n",
+    "    subplot = plt.subplots()\n",
+    "    if 0 == basis: # BASIC\n",
+    "        weights = np.diag(s0.spline_coeff)\n",
+    "        bases = [sk.PeriodicSpline1D.from_spline_coeff(w, degree = degree) for w in weights]\n",
+    "        image = {b.image() for b in bases}\n",
+    "        image.add(s0.image())\n",
+    "        plotrange = sk.interval.Interval.enclosure(image)\n",
+    "        plotrange = sk.interval.Closed((\n",
+    "            plotrange.midpoint - 0.55 * plotrange.diameter,\n",
+    "            plotrange.midpoint + 0.55 * plotrange.diameter\n",
+    "        ))\n",
+    "        s0.plot(\n",
+    "            subplot,\n",
+    "            plotrange = plotrange,\n",
+    "            plotpoints = 200 + 1,\n",
+    "            curve_fmt = \"-C0\",\n",
+    "#            curve_markerfmt = \"\",\n",
+    "            curvestem_linefmt = \"None\",\n",
+    "            knot_marker = \"\",\n",
+    "#            periodbound_markerfmt = \"\",\n",
+    "            periodboundstem_linefmt = \"None\"\n",
+    "        )\n",
+    "        for k in range(s0.period):\n",
+    "            sk.PeriodicSpline1D.from_spline_coeff(weights[k], degree = degree).plot(\n",
+    "                subplot,\n",
+    "#                plotrange = plotrange,\n",
+    "                plotpoints = 200 + 1,\n",
+    "                curve_fmt = \"-C\" + str(1 + k % 9),\n",
+    "                curve_lw = 0.25,\n",
+    "                curve_markerfmt = \"\",\n",
+    "                curvestem_linefmt = \"None\",\n",
+    "                knot_marker = \"\",\n",
+    "                periodbound_markerfmt = \"\",\n",
+    "                periodboundstem_linefmt = \"None\"\n",
+    "            )\n",
+    "    elif 1 == basis: # CARDINAL\n",
+    "        pass\n",
+    "    elif 2 == basis: # DUAL\n",
+    "        pass\n",
+    "    elif 3 == basis: # ORTHONORMAL\n",
+    "        pass\n",
+    "    plt.show()\n",
+    "\n",
+    "widgets.interactive(\n",
+    "    update_plot,\n",
+    "    degree = (0, max_degree),\n",
+    "    samples = (1, max_samples),\n",
+    "    basis = widgets.RadioButtons(\n",
+    "        options = [\n",
+    "            (\"BASIC\", 0),\n",
+    "            (\"CARDINAL\", 1),\n",
+    "            (\"DUAL\", 2),\n",
+    "            (\"ORTHONORMAL\", 3)\n",
+    "        ],\n",
+    "        value = 0,\n",
+    "        description = \"Basis:\",\n",
+    "        disabled = False\n",
+    "    )\n",
+    ")\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "c719d9b2-273a-431b-9812-11db4edcb69c",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n",
+    "\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "9f4a8be2-2daf-434d-b890-44dba41caadd",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.12.6"
+  },
+  "widgets": {
+   "application/vnd.jupyter.widget-state+json": {
+    "state": {
+     "290f6db0175c4515ab17582f0ece0b76": {
+      "model_module": "@jupyter-widgets/base",
+      "model_module_version": "2.0.0",
+      "model_name": "LayoutModel",
+      "state": {}
+     },
+     "2bb8535562e54118900f09f11c288ee0": {
+      "model_module": "@jupyter-widgets/controls",
+      "model_module_version": "2.0.0",
+      "model_name": "SliderStyleModel",
+      "state": {
+       "description_width": ""
+      }
+     },
+     "3b3caea94c024ea286c6934c5c50c991": {
+      "model_module": "@jupyter-widgets/controls",
+      "model_module_version": "2.0.0",
+      "model_name": "DescriptionStyleModel",
+      "state": {
+       "description_width": ""
+      }
+     },
+     "5b5e9326ceea4e8bacbfbf7c303a6675": {
+      "model_module": "@jupyter-widgets/controls",
+      "model_module_version": "2.0.0",
+      "model_name": "IntSliderModel",
+      "state": {
+       "behavior": "drag-tap",
+       "description": "samples",
+       "layout": "IPY_MODEL_6882f5a10bd84a19a66c66147f5b4ee8",
+       "max": 12,
+       "min": 1,
+       "style": "IPY_MODEL_c48d7a20765e488a9e94f025180e3097",
+       "value": 6
+      }
+     },
+     "6882f5a10bd84a19a66c66147f5b4ee8": {
+      "model_module": "@jupyter-widgets/base",
+      "model_module_version": "2.0.0",
+      "model_name": "LayoutModel",
+      "state": {}
+     },
+     "6fdf071ac0a3454b910f7807befd995e": {
+      "model_module": "@jupyter-widgets/output",
+      "model_module_version": "1.0.0",
+      "model_name": "OutputModel",
+      "state": {
+       "layout": "IPY_MODEL_8519500f36604ab69c94224abe14d597",
+       "outputs": [
+        {
+         "ename": "ValueError",
+         "evalue": "Internal error (signum pieces out of sequence)",
+         "output_type": "error",
+         "traceback": [
+          "\u001b[31m---------------------------------------------------------------------------\u001b[39m",
+          "\u001b[31mValueError\u001b[39m                                Traceback (most recent call last)",
+          "\u001b[36mFile \u001b[39m\u001b[32m~/Documents/Programmation/Python/splinekit/splinekit-env/lib/python3.12/site-packages/ipywidgets/widgets/interaction.py:243\u001b[39m, in \u001b[36minteractive.update\u001b[39m\u001b[34m(self, *args)\u001b[39m\n\u001b[32m    241\u001b[39m     value = widget.get_interact_value()\n\u001b[32m    242\u001b[39m     \u001b[38;5;28mself\u001b[39m.kwargs[widget._kwarg] = value\n\u001b[32m--> \u001b[39m\u001b[32m243\u001b[39m \u001b[38;5;28mself\u001b[39m.result = \u001b[38;5;28;43mself\u001b[39;49m\u001b[43m.\u001b[49m\u001b[43mf\u001b[49m\u001b[43m(\u001b[49m\u001b[43m*\u001b[49m\u001b[43m*\u001b[49m\u001b[38;5;28;43mself\u001b[39;49m\u001b[43m.\u001b[49m\u001b[43mkwargs\u001b[49m\u001b[43m)\u001b[49m\n\u001b[32m    244\u001b[39m show_inline_matplotlib_plots()\n\u001b[32m    245\u001b[39m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;28mself\u001b[39m.auto_display \u001b[38;5;129;01mand\u001b[39;00m \u001b[38;5;28mself\u001b[39m.result \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m:\n",
+          "\u001b[36mCell\u001b[39m\u001b[36m \u001b[39m\u001b[32mIn[1]\u001b[39m\u001b[32m, line 36\u001b[39m, in \u001b[36mupdate_plot\u001b[39m\u001b[34m(degree, samples, basis)\u001b[39m\n\u001b[32m     34\u001b[39m weights = np.diag(s0.spline_coeff)\n\u001b[32m     35\u001b[39m bases = [sk.PeriodicSpline1D.from_spline_coeff(w, degree = degree) \u001b[38;5;28;01mfor\u001b[39;00m w \u001b[38;5;129;01min\u001b[39;00m weights]\n\u001b[32m---> \u001b[39m\u001b[32m36\u001b[39m image = {\u001b[43mb\u001b[49m\u001b[43m.\u001b[49m\u001b[43mimage\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m \u001b[38;5;28;01mfor\u001b[39;00m b \u001b[38;5;129;01min\u001b[39;00m bases}\n\u001b[32m     37\u001b[39m image.add(s0.image())\n\u001b[32m     38\u001b[39m plotrange = sk.interval.Interval.enclosure(image)\n",
+          "\u001b[36mFile \u001b[39m\u001b[32m~/Documents/Programmation/Python/splinekit/splinekit-env/lib/python3.12/site-packages/splinekit/periodic_spline_1d.py:3084\u001b[39m, in \u001b[36mPeriodicSpline1D.image\u001b[39m\u001b[34m(self)\u001b[39m\n\u001b[32m   3049\u001b[39m \u001b[38;5;28;01mdef\u001b[39;00m\u001b[38;5;250m \u001b[39m\u001b[34mimage\u001b[39m (\n\u001b[32m   3050\u001b[39m     \u001b[38;5;28mself\u001b[39m\n\u001b[32m   3051\u001b[39m ) -> Interval:\n\u001b[32m   3053\u001b[39m \u001b[38;5;250m    \u001b[39m\u001b[33mr\u001b[39m\u001b[33;03m\"\"\"\u001b[39;00m\n\u001b[32m   3054\u001b[39m \u001b[33;03m    .. _periodic_spline_1d-image:\u001b[39;00m\n\u001b[32m   3055\u001b[39m \n\u001b[32m   (...)\u001b[39m\u001b[32m   3081\u001b[39m \n\u001b[32m   3082\u001b[39m \u001b[33;03m    \"\"\"\u001b[39;00m\n\u001b[32m-> \u001b[39m\u001b[32m3084\u001b[39m     (minima, maxima) = \u001b[38;5;28;43mself\u001b[39;49m\u001b[43m.\u001b[49m\u001b[43mextrema\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m\n\u001b[32m   3085\u001b[39m     minimum = \u001b[38;5;28mself\u001b[39m.at(\u001b[32m0.0\u001b[39m)\n\u001b[32m   3086\u001b[39m     \u001b[38;5;28;01mfor\u001b[39;00m ex \u001b[38;5;129;01min\u001b[39;00m minima:\n",
+          "\u001b[36mFile \u001b[39m\u001b[32m~/Documents/Programmation/Python/splinekit/splinekit-env/lib/python3.12/site-packages/splinekit/periodic_spline_1d.py:3836\u001b[39m, in \u001b[36mPeriodicSpline1D.extrema\u001b[39m\u001b[34m(self)\u001b[39m\n\u001b[32m   3784\u001b[39m \u001b[38;5;250m\u001b[39m\u001b[33mr\u001b[39m\u001b[33;03m\"\"\"\u001b[39;00m\n\u001b[32m   3785\u001b[39m \u001b[33;03m.. _periodic_spline_1d-extrema:\u001b[39;00m\n\u001b[32m   3786\u001b[39m \n\u001b[32m   (...)\u001b[39m\u001b[32m   3832\u001b[39m \n\u001b[32m   3833\u001b[39m \u001b[33;03m\"\"\"\u001b[39;00m\n\u001b[32m   3835\u001b[39m \u001b[38;5;28;01mif\u001b[39;00m \u001b[32m0\u001b[39m < \u001b[38;5;28mself\u001b[39m._degree:\n\u001b[32m-> \u001b[39m\u001b[32m3836\u001b[39m     zc = \u001b[38;5;28;43mself\u001b[39;49m\u001b[43m.\u001b[49m\u001b[43mgradient\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m\u001b[43m.\u001b[49m\u001b[43mzero_crossings\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m\n\u001b[32m   3837\u001b[39m     \u001b[38;5;28;01mreturn\u001b[39;00m [\n\u001b[32m   3838\u001b[39m         [\n\u001b[32m   3839\u001b[39m             PeriodicSpline1D.Extremum(\n\u001b[32m   (...)\u001b[39m\u001b[32m   3851\u001b[39m         ]\n\u001b[32m   3852\u001b[39m     ]\n\u001b[32m   3853\u001b[39m zc = PeriodicSpline1D.from_spline_coeff(\n\u001b[32m   3854\u001b[39m     cast(\n\u001b[32m   3855\u001b[39m         np.ndarray[\u001b[38;5;28mtuple\u001b[39m[\u001b[38;5;28mint\u001b[39m], np.dtype[np.float64]],\n\u001b[32m   (...)\u001b[39m\u001b[32m   3866\u001b[39m     delay = \u001b[38;5;28mself\u001b[39m._delay - \u001b[32m0.5\u001b[39m\n\u001b[32m   3867\u001b[39m ).zero_crossings()\n",
+          "\u001b[36mFile \u001b[39m\u001b[32m~/Documents/Programmation/Python/splinekit/splinekit-env/lib/python3.12/site-packages/splinekit/periodic_spline_1d.py:3479\u001b[39m, in \u001b[36mPeriodicSpline1D.zero_crossings\u001b[39m\u001b[34m(self)\u001b[39m\n\u001b[32m   3423\u001b[39m \u001b[38;5;250m\u001b[39m\u001b[33mr\u001b[39m\u001b[33;03m\"\"\"\u001b[39;00m\n\u001b[32m   3424\u001b[39m \u001b[33;03m.. _periodic_spline_1d-zero_crossings:\u001b[39;00m\n\u001b[32m   3425\u001b[39m \n\u001b[32m   (...)\u001b[39m\u001b[32m   3475\u001b[39m \n\u001b[32m   3476\u001b[39m \u001b[33;03m\"\"\"\u001b[39;00m\n\u001b[32m   3478\u001b[39m zc: List[List[Interval]] = [[], []]\n\u001b[32m-> \u001b[39m\u001b[32m3479\u001b[39m pieces = \u001b[38;5;28;43mself\u001b[39;49m\u001b[43m.\u001b[49m\u001b[43mpiecewise_sgn\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m.pieces\n\u001b[32m   3480\u001b[39m p0 = \u001b[38;5;28mlen\u001b[39m(pieces)\n\u001b[32m   3481\u001b[39m \u001b[38;5;28;01mif\u001b[39;00m \u001b[32m1\u001b[39m == p0:\n",
+          "\u001b[36mFile \u001b[39m\u001b[32m~/Documents/Programmation/Python/splinekit/splinekit-env/lib/python3.12/site-packages/splinekit/periodic_spline_1d.py:5145\u001b[39m, in \u001b[36mPeriodicSpline1D.piecewise_sgn\u001b[39m\u001b[34m(self)\u001b[39m\n\u001b[32m   5141\u001b[39m \u001b[38;5;28;01mif\u001b[39;00m \u001b[38;5;28misinstance\u001b[39m(ps[k + \u001b[32m1\u001b[39m].domain, Singleton):\n\u001b[32m   5142\u001b[39m     \u001b[38;5;28;01mif\u001b[39;00m (cast(Singleton, ps[k].domain).value !=\n\u001b[32m   5143\u001b[39m         cast(Singleton, ps[k + \u001b[32m1\u001b[39m].domain).value\n\u001b[32m   5144\u001b[39m     ):\n\u001b[32m-> \u001b[39m\u001b[32m5145\u001b[39m         \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mValueError\u001b[39;00m(\n\u001b[32m   5146\u001b[39m             \u001b[33m\"\u001b[39m\u001b[33mInternal error (signum pieces out of sequence)\u001b[39m\u001b[33m\"\u001b[39m\n\u001b[32m   5147\u001b[39m         )\n\u001b[32m   5148\u001b[39m     \u001b[38;5;28;01mif\u001b[39;00m ps[k].item != ps[k + \u001b[32m1\u001b[39m].item:\n\u001b[32m   5149\u001b[39m         \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mValueError\u001b[39;00m(\n\u001b[32m   5150\u001b[39m             \u001b[33m\"\u001b[39m\u001b[33mInternal error (inconsistent signum pieces)\u001b[39m\u001b[33m\"\u001b[39m\n\u001b[32m   5151\u001b[39m         )\n",
+          "\u001b[31mValueError\u001b[39m: Internal error (signum pieces out of sequence)"
+         ]
+        }
+       ]
+      }
+     },
+     "7ba55e1b03db4b89a1cde51c90aaae39": {
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+        "IPY_MODEL_5b5e9326ceea4e8bacbfbf7c303a6675",
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+ "nbformat": 4,
+ "nbformat_minor": 5
+}