spikeinterface 0.104.1__tar.gz → 0.104.2__tar.gz

{spikeinterface-0.104.1/src/spikeinterface.egg-info → spikeinterface-0.104.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: spikeinterface
-Version: 0.104.1
+Version: 0.104.2
 Summary: Python toolkit for analysis, visualization, and comparison of spike sorting output
 Author-email: Alessio Buccino <alessiop.buccino@gmail.com>, Samuel Garcia <sam.garcia.die@gmail.com>
 Project-URL: homepage, https://github.com/SpikeInterface/spikeinterface

{spikeinterface-0.104.1 → spikeinterface-0.104.2}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "spikeinterface"
-version = "0.104.1"
+version = "0.104.2"
 authors = [
   { name="Alessio Buccino", email="alessiop.buccino@gmail.com" },
   { name="Samuel Garcia", email="sam.garcia.die@gmail.com" },

{spikeinterface-0.104.1 → spikeinterface-0.104.2}/src/spikeinterface/core/base.py

@@ -1138,14 +1138,8 @@ def _load_extractor_from_dict(dic) -> BaseExtractor:
 
     assert extractor_class is not None and class_name is not None, "Could not load spikeinterface class"
     is_old_version = not _check_same_version(class_name, dic["version"])
-    if is_old_version:
-        warnings.warn(
-            f"Versions are not the same. This might lead to compatibility errors. "
-            f"Using {class_name.split('.')[0]}=={dic['version']} is recommended"
-        )
-
-        if hasattr(extractor_class, "_handle_backward_compatibility"):
-            new_kwargs = extractor_class._handle_backward_compatibility(new_kwargs, dic)
+    if is_old_version and hasattr(extractor_class, "_handle_backward_compatibility"):
+        new_kwargs = extractor_class._handle_backward_compatibility(new_kwargs, dic)
 
     # Initialize the extractor
     extractor = extractor_class(**new_kwargs)

{spikeinterface-0.104.1 → spikeinterface-0.104.2}/src/spikeinterface/core/waveforms_extractor_backwards_compatibility.py

@@ -628,12 +628,16 @@ def _read_old_waveforms_extractor_binary(folder, sorting):
                     pc_all[mask, ...] = pc_one
                 ext.data["pca_projection"] = pc_all
 
-        # update params
-        new_params = ext._set_params()
-        updated_params = make_ext_params_up_to_date(ext, params, new_params)
-        ext.set_params(**updated_params, save=False)
+        # Install raw on-disk params and run compat handler first,
+        # matching what AnalyzerExtension.load does for non-legacy folders.
+        ext.params = dict(params)
         if ext.need_backward_compatibility_on_load:
             ext._handle_backward_compatibility_on_load()
+
+        # Now merge and validate — deprecated names are already migrated.
+        new_params = ext._set_params()
+        updated_params = make_ext_params_up_to_date(ext, ext.params, new_params)
+        ext.set_params(**updated_params, save=False)
         ext.run_info = None
 
         sorting_analyzer.extensions[new_name] = ext

{spikeinterface-0.104.1 → spikeinterface-0.104.2}/src/spikeinterface/extractors/neoextractors/openephys.py

@@ -229,6 +229,8 @@ class OpenEphysBinaryRecordingExtractor(NeoBaseRecordingExtractor):
         experiment_names: str | list | None = None,
         all_annotations: bool = False,
     ):
+        folder_path = Path(folder_path)
+
         # Handle experiment_names deprecation
         if experiment_names is not None:
             warnings.warn(
@@ -348,8 +350,15 @@ class OpenEphysBinaryRecordingExtractor(NeoBaseRecordingExtractor):
                     if sample_shifts is not None:
                         self.set_property("inter_sample_shift", sample_shifts)
 
-            # load synchronized timestamps and set_times to recording
-            recording_folder = Path(folder_path) / record_node
+            # folder_path can point to different levels of the OE folder structure
+            # (root, record node, experiment, or recording). We need to find the root folder
+            # in order to load the sync timestamps and set them as times to the recording.
+            if record_node in folder_path.parts:
+                root_index = len(folder_path.parts) - folder_path.parts.index(record_node) - 1
+                root_folder = folder_path.parents[root_index]
+            else:
+                root_folder = folder_path
+            recording_folder = root_folder / record_node
             stream_folders = []
             for segment_index, rec_id in enumerate(rec_ids):
                 stream_folder = (

{spikeinterface-0.104.1 → spikeinterface-0.104.2/src/spikeinterface.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: spikeinterface
-Version: 0.104.1
+Version: 0.104.2
 Summary: Python toolkit for analysis, visualization, and comparison of spike sorting output
 Author-email: Alessio Buccino <alessiop.buccino@gmail.com>, Samuel Garcia <sam.garcia.die@gmail.com>
 Project-URL: homepage, https://github.com/SpikeInterface/spikeinterface