speedy-utils 0.1.28__tar.gz → 0.1.30__tar.gz

{speedy_utils-0.1.28 → speedy_utils-0.1.30}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: speedy-utils
-Version: 0.1.28
+Version: 0.1.30
 Summary: Fast and easy-to-use package for data science
 Author: AnhVTH
 Author-email: anhvth.226@gmail.com
@@ -19,11 +19,12 @@ Requires-Dist: fastprogress
 Requires-Dist: freezegun (>=1.5.1,<2.0.0)
 Requires-Dist: ipdb
 Requires-Dist: ipywidgets
-Requires-Dist: json-repair
+Requires-Dist: json-repair (>=0.40.0,<0.41.0)
 Requires-Dist: jupyterlab
 Requires-Dist: loguru
 Requires-Dist: matplotlib
 Requires-Dist: numpy
+Requires-Dist: packaging (>=23.2,<25)
 Requires-Dist: pandas
 Requires-Dist: pydantic
 Requires-Dist: requests
@@ -261,29 +262,6 @@ Ensure all dependencies are installed before running tests:
 pip install -r requirements.txt
 ```
 
-## Data Arguments
-
-Define and parse data arguments using a dataclass:
-
-```python
-from dataclasses import dataclass
-from speedy_utils.common.dataclass_parser import ArgsParser
-
-@dataclass
-class ExampleArgs(ArgsParser):
-    from_peft: str = "./outputs/llm_hn_qw32b/hn_results_r3/"
-    model_name_or_path: str = "Qwen/Qwen2.5-32B-Instruct-AWQ"
-    use_fp16: bool = False
-    batch_size: int = 1
-    max_length: int = 512
-    cache_dir: str = ".cache/run_embeds"
-    output_dir: str = ".cache"
-    input_file: str = ".cache/doc.csv"
-    output_name: str = "qw32b_r3"
-
-args = ExampleArgs.parse_args()
-print(args)
-```
 
 Run the script to parse and display the arguments:
 
@@ -299,5 +277,3 @@ Example output:
 
 Please ensure your code adheres to the project's coding standards and includes appropriate tests.
 
-
-

{speedy_utils-0.1.28 → speedy_utils-0.1.30}/README.md

@@ -225,29 +225,6 @@ Ensure all dependencies are installed before running tests:
 pip install -r requirements.txt
 ```
 
-## Data Arguments
-
-Define and parse data arguments using a dataclass:
-
-```python
-from dataclasses import dataclass
-from speedy_utils.common.dataclass_parser import ArgsParser
-
-@dataclass
-class ExampleArgs(ArgsParser):
-    from_peft: str = "./outputs/llm_hn_qw32b/hn_results_r3/"
-    model_name_or_path: str = "Qwen/Qwen2.5-32B-Instruct-AWQ"
-    use_fp16: bool = False
-    batch_size: int = 1
-    max_length: int = 512
-    cache_dir: str = ".cache/run_embeds"
-    output_dir: str = ".cache"
-    input_file: str = ".cache/doc.csv"
-    output_name: str = "qw32b_r3"
-
-args = ExampleArgs.parse_args()
-print(args)
-```
 
 Run the script to parse and display the arguments:
 
@@ -262,5 +239,3 @@ Example output:
 | from_peft          | ./outputs/llm_hn_qw32b/hn_results_r3/ |
 
 Please ensure your code adheres to the project's coding standards and includes appropriate tests.
-
-

{speedy_utils-0.1.28 → speedy_utils-0.1.30}/pyproject.toml

@@ -1,11 +1,14 @@
 [tool.poetry]
 name = "speedy-utils"
-version = "0.1.28"
+version = "0.1.30"
 description = "Fast and easy-to-use package for data science"
 authors = ["AnhVTH <anhvth.226@gmail.com>"]
 readme = "README.md"
 homepage = "https://github.com/anhvth/speedy"
-packages = [{ include = "speedy_utils", from = "src" }]
+packages = [
+    { include = "speedy_utils", from = "src" },
+    { include = "llm_utils", from = "src" },
+]
 
 [build-system]
 requires = ["poetry-core>=1.0.0"]
@@ -51,9 +54,10 @@ pydantic = "*"
 tqdm = "*"
 cachetools = "*"
 bump2version = "*"
-json-repair = "*"
+json-repair = ">=0.40.0,<0.41.0"
 fastprogress = "*"
 freezegun = "^1.5.1"
+packaging = ">=23.2,<25"
 
 [tool.poetry.scripts]
 mpython = "speedy_utils.scripts.mpython:main"

speedy_utils-0.1.30/src/llm_utils/__init__.py

@@ -0,0 +1,30 @@
+from .chat_format import (
+    transform_messages,
+    transform_messages_to_chatml,
+    display_chat_messages_as_html,
+    get_conversation_one_turn,
+    display_diff_two_string,
+    display_conversations,
+    build_chatml_input,
+    format_msgs,
+)
+from .lm import OAI_LM, LM
+from .group_messages import (
+    split_indices_by_length,
+    group_messages_by_len,
+)
+
+__all__ = [
+    "transform_messages",
+    "transform_messages_to_chatml",
+    "display_chat_messages_as_html",
+    "get_conversation_one_turn",
+    "display_diff_two_string",
+    "display_conversations",
+    "build_chatml_input",
+    "format_msgs",
+    "OAI_LM",
+    "LM",
+    "split_indices_by_length",
+    "group_messages_by_len",
+]

speedy_utils-0.1.30/src/llm_utils/chat_format.py

@@ -0,0 +1,427 @@
+from copy import deepcopy
+from typing import Dict, List, Literal, Union
+
+from IPython.display import HTML, Markdown, display
+from loguru import logger
+
+
+def identify_format(item):
+    if isinstance(item, list) and "role" in item[0]:
+        return "chatml"
+    if isinstance(item, dict):
+        if "conversations" in item:
+            return "sharegpt"
+    raise ValueError(
+        f"The format of the item is not recognized. \n{type(item)=}, \n{item=}"
+    )
+
+
+def _transform_sharegpt_to_chatml(
+    item, default_system_message="You are a helpful assistant.", print_msg=False
+):
+    # if isinstance(item, list):
+    # return [_transform_sharegpt_to_chatml(item) for item in item]
+    assert isinstance(
+        item, dict
+    ), "The item is not in the correct format. Please check the format of the item."
+
+    messages = []
+    system_msg = item.get("system", "")
+    if system_msg:
+        messages.append({"role": "system", "content": system_msg})
+    elif default_system_message:
+        messages.append({"role": "system", "content": default_system_message})
+    conversations = item.get("conversations", [])
+    if hasattr(conversations, "tolist"):
+        conversations = conversations.tolist()
+    # import ipdb; ipdb.set_trace()
+    assert conversations, "The item does not have any conversations."
+    for conversation in item.get("conversations", []):
+        role = conversation["from"]
+        content = conversation["value"]
+        messages.append({"role": role, "content": content})
+
+    return messages
+
+
+def transform_messages(
+    item,
+    frm="chatml",
+    to="text",
+    add_generation_prompt=True,
+    tokenizer=None,
+    assistant_prefix=None,
+):
+    assert to in [
+        "chatml",
+        "text",
+        "sharegpt",
+        "simulated_chat",
+    ], "The output format is not recognized. Please specify the output format."
+    item = deepcopy(item)
+
+    if tokenizer is not None:
+        assert frm == "chatml", "Tokenizer is only supported for chatml format."
+        prompt = tokenizer.apply_chat_template(
+            item, tokenize=False, add_generation_prompt=True
+        )
+        assert isinstance(prompt, str), "Prompt must be a string."
+        if assistant_prefix:
+            prompt += f"{assistant_prefix}"
+        return prompt
+
+    if frm != to:
+        # convert item to chatml format
+        chatml_messages = transform_messages_to_chatml(item, input_format=frm)
+        if to == "sharegpt":
+            if chatml_messages[0]["role"] == "system":
+                system_message = chatml_messages[0]["content"]
+                ret = {"conversations": [], "system": system_message.strip()}
+                for message in chatml_messages[1:]:
+                    ret["conversations"].append(
+                        {"from": message["role"], "value": message["content"]}
+                    )
+            else:
+                system_message = "You are a helpful assistant."
+                ret = {"conversations": [], "system": system_message.strip()}
+                for message in chatml_messages:
+                    ret["conversations"].append(
+                        {"from": message["role"], "value": message["content"]}
+                    )
+            return ret
+        elif to == "chatml":
+            return _transform_sharegpt_to_chatml(item)
+        elif to == "text":
+            text = ""
+            for turn in chatml_messages:
+                text += f"<|im_start|>{turn['role']}\n{turn['content']}<|im_end|>\n"
+            if add_generation_prompt:
+                text += "<|im_start|>assistant\n"
+            return text
+        elif to == "simulated_chat":
+            text = "<role> Given the simulated chat, you are the assistant. Lets continue the conversation. \n\n"
+            for turn in chatml_messages:
+                prefix = {
+                    "user": "Human",
+                    "assistant": "AI",
+                    "system": "System",
+                    "function": "Function",
+                }.get(turn["role"])
+                text += f"{prefix}: {turn['content'].strip()}\n\n"
+            if add_generation_prompt:
+                text += "AI: [continue the conversation here]"
+            return text
+        else:
+            raise ValueError(f"{to} is not supported.")
+
+    else:
+        return item
+
+
+def transform_messages_to_chatml(input_data, input_format="auto"):
+    if input_format == "auto":
+        input_data = raw_data = deepcopy(input_data)
+        if isinstance(input_data, list):
+            input_format = "chatlm"
+            assert (
+                input_data[0].get("role") is not None
+            ), "The input format is not recognized. Please specify the input format."
+        elif isinstance(input_data, dict):
+            input_data = _transform_sharegpt_to_chatml(input_data)
+            input_format = "sharegpt"
+        elif isinstance(input_data, str):
+            # assume it has format <|im_start|>role\n content<|im_end|> use regex to parse
+            assert (
+                "<|im_end|>" in input_data
+            ), "The input format is not recognized. Please specify the input format."
+            input_format = "chatlm"
+            parts = input_data.split("<|im_end|>")
+            # for each part, split by <|im_start|> to get role and content
+            input_data = []
+            for part in parts:
+                if not part.strip():
+                    continue
+                role = part.split("<|im_start|>")[1].split("\n")[0]
+                # content is after |>role\n
+                content = part.split(f"<|im_start|>{role}\n")[1]
+                content = content.split("<|im_end|>")[0]
+                input_data.append({"role": role.strip(), "content": content.strip()})
+
+    return input_data
+
+
+def display_chat_messages_as_html(
+    msgs, return_html=False, file="/tmp/conversation.html", theme="light"
+):
+    if isinstance(msgs, dict) and "messages" in msgs:
+        msgs = msgs["messages"]
+
+    # ensure is a list of dict each dict has role and content
+    assert isinstance(msgs, list) and all(
+        isinstance(msg, dict) and "role" in msg and "content" in msg for msg in msgs
+    ), "The input format is not recognized. Please specify the input format."
+
+    color_scheme = {
+        "system": {
+            "background": "#FFAAAA",
+            "text": "#000000",
+        },  # Light red background, black text
+        "user": {
+            "background": "#AAFFAA",
+            "text": "#000000",
+        },  # Light green background, black text
+        "assistant": {
+            "background": "#AAAAFF",
+            "text": "#000000",
+        },  # Light blue background, black text
+        "function": {
+            "background": "#AFFFFF",
+            "text": "#000000",
+        },  # Light yellow background, black text
+        "default": {
+            "background": "#FFFFFF",
+            "text": "#000000",
+        },  # White background, black text
+        "tool": {"background": "#FFAAFF", "text": "#000000"},
+    }
+
+    conversation_html = ""
+    for i, message in enumerate(msgs):
+        role = message["role"]
+        content = message.get("content", "")
+        if not content:
+            content = ""
+
+        tool_calls = message.get("tool_calls")
+        if not content and tool_calls:
+            # each tool call comes with name, and args
+
+            for tool_call in tool_calls:
+                tool_call = tool_call["function"]
+                name = tool_call["name"]
+                args = tool_call["arguments"]
+                content += "Tool: " + name + "\n" + "Arguments: " + str(args)
+
+        # Replace newlines with <br> tags
+        content = content.replace("\n", "<br>")
+
+        # Replace tabs with &nbsp; entities
+        content = content.replace("\t", "&nbsp;&nbsp;&nbsp;&nbsp;")
+
+        # Replace multiple consecutive spaces with &nbsp; entities
+        content = content.replace("  ", "&nbsp;&nbsp;")
+        # keep html tag without escaping
+        # content = content.replace('&lt;', '<')
+
+        content = (
+            content.replace("<br>", "TEMP_BR")
+            .replace("<", "&lt;")
+            .replace(">", "&gt;")
+            .replace("TEMP_BR", "<br>")
+        )
+
+        if role in color_scheme:
+            background_color = color_scheme[role]["background"]
+            text_color = color_scheme[role]["text"]
+        else:
+            background_color = color_scheme["default"]["background"]
+            text_color = color_scheme["default"]["text"]
+
+        if role == "system":
+            conversation_html += f'<div style="background-color: {background_color}; color: {text_color}; padding: 10px; margin-bottom: 10px;"><strong>System:</strong><br><pre id="system-{i}">{content}</pre></div>'
+        elif role == "user":
+            conversation_html += f'<div style="background-color: {background_color}; color: {text_color}; padding: 10px; margin-bottom: 10px;"><strong>User:</strong><br><pre id="user-{i}">{content}</pre></div>'
+        elif role == "assistant":
+            conversation_html += f'<div style="background-color: {background_color}; color: {text_color}; padding: 10px; margin-bottom: 10px;"><strong>Assistant:</strong><br><pre id="assistant-{i}">{content}</pre></div>'
+        elif role == "function":
+            conversation_html += f'<div style="background-color: {background_color}; color: {text_color}; padding: 10px; margin-bottom: 10px;"><strong>Function:</strong><br><pre id="function-{i}">{content}</pre></div>'
+        else:
+            # logger.warning(f"Unknown role: {role}")
+            conversation_html += f'<div style="background-color: {background_color}; color: {text_color}; padding: 10px; margin-bottom: 10px;"><strong>{role}:</strong><br><pre id="{role}-{i}">{content}</pre><br><button onclick="copyContent(\'{role}-{i}\')">Copy</button></div>'
+
+    html = f"""
+    <html>
+    <head>
+        <style>
+            pre {{
+                white-space: pre-wrap;
+            }}
+        </style>
+    </head>
+    <body>
+        {conversation_html}
+        <script>
+            function copyContent(elementId) {{
+                var element = document.getElementById(elementId);
+                var text = element.innerText;
+                navigator.clipboard.writeText(text)
+                    .then(function() {{
+                        alert("Content copied to clipboard!");
+                    }})
+                    .catch(function(error) {{
+                        console.error("Error copying content: ", error);
+                    }});
+            }}
+        </script>
+    </body>
+    </html>
+    """
+
+    if file:
+        with open(file, "w") as f:
+            f.write(html)
+    if return_html:
+        return html
+    else:
+        display(HTML(html))
+
+
+def get_conversation_one_turn(
+    system_msg=None,
+    user_msg=None,
+    assistant_msg=None,
+    assistant_prefix=None,
+    return_format="chatml",
+):
+    messages = []
+    if system_msg:
+        messages.append({"role": "system", "content": system_msg})
+    messages.append({"role": "user", "content": user_msg})
+    if assistant_msg:
+        messages.append({"role": "assistant", "content": assistant_msg})
+    if assistant_prefix is not None:
+        assert (
+            return_format != "chatml"
+        ), "Change return_format to 'text' if you want to use assistant_prefix"
+        assert messages[-1]["role"] == "user"
+        msg = transform_messages(messages, "chatml", "text", add_generation_prompt=True)
+        msg += assistant_prefix
+        return msg
+    else:
+        assert return_format in ["chatml"]
+        return messages
+
+
+from difflib import ndiff
+
+from IPython.display import HTML
+
+
+def display_diff_two_string(text1, text2):
+    # Split the texts into lines
+    lines1 = text1.splitlines()
+    lines2 = text2.splitlines()
+
+    # Perform the diff
+    diff = list(ndiff(lines1, lines2))
+
+    # Create the HTML table
+    table_rows = []
+    for line in diff:
+        if line.startswith("- "):
+            table_rows.append(
+                f'<tr><td style="background-color: #FFCCCB;">{line[2:]}</td><td></td></tr>'
+            )
+        elif line.startswith("+ "):
+            table_rows.append(
+                f'<tr><td></td><td style="background-color: #CCFFCC;">{line[2:]}</td></tr>'
+            )
+        elif line.startswith("? "):
+            continue
+        else:
+            table_rows.append(f"<tr><td>{line}</td><td>{line}</td></tr>")
+
+    table_html = '<table style="width: 100%; border-collapse: collapse;">'
+    table_html += '<tr><th style="width: 50%; text-align: left;">Text 1</th><th style="width: 50%; text-align: left;">Text 2</th></tr>'
+    table_html += "".join(table_rows)
+    table_html += "</table>"
+
+    # Display the HTML table
+    display(HTML(table_html))
+
+
+def display_conversations(data1, data2, theme="light"):
+    html1 = display_chat_messages_as_html(data1, return_html=True, theme=theme)
+    html2 = display_chat_messages_as_html(data2, return_html=True, theme=theme)
+
+    html = f"""
+    <html>
+    <head>
+        <style>
+            table {{
+                width: 100%;
+                border-collapse: collapse;
+            }}
+            td {{
+                width: 50%;
+                vertical-align: top;
+                padding: 10px;
+            }}
+        </style>
+    </head>
+    <body>
+        <table>
+            <tr>
+                <td>{html1}</td>
+                <td>{html2}</td>
+            </tr>
+        </table>
+    </body>
+    </html>
+    """
+    display(HTML(html))
+
+
+from typing import Callable, Dict, List
+
+
+def build_chatml_input(template: str, params: List[str]) -> Callable:
+    def formator(**kwargs) -> List[List[Dict[str, str]]]:
+        system_msg = kwargs.get("system_msg", None)
+        # remove system
+        kwargs.pop("system_msg", None)
+        # Ensure all required parameters are present in kwargs
+        for param in params:
+            if param not in kwargs:
+                raise ValueError(f"Missing parameter: {param}")
+
+        # Use the **kwargs directly in the format method
+        content = template.format(**kwargs)
+        msgs = []
+        if system_msg:
+            msgs += [{"role": "system", "content": system_msg}]
+        msgs += [{"role": "user", "content": content}]
+        return msgs
+
+    return formator
+
+
+def _color_text(text, color_code):
+    """Helper function to color text based on the provided ANSI color code."""
+    return f"\033[{color_code}m{text}\033[0m"
+
+
+def format_msgs(messages):
+    """Formats the role and content of a list of messages into a string."""
+    messages = transform_messages_to_chatml(messages)
+    output = []
+
+    for msg in messages:
+        role = msg.get("role", "unknown").lower()
+        content = msg.get("content", "").strip()
+        output.append(f"{role.capitalize()}:\t{content}")
+        output.append("---")
+
+    return "\n".join(output)
+
+
+__all__ = [
+    "transform_messages",
+    "transform_messages_to_chatml",
+    "display_chat_messages_as_html",
+    "get_conversation_one_turn",
+    "display_diff_two_string",
+    "display_conversations",
+    "build_chatml_input",
+    "format_msgs",
+]

speedy_utils-0.1.30/src/llm_utils/group_messages.py

@@ -0,0 +1,119 @@
+import random
+from typing import Optional
+
+import numpy as np
+import pandas as pd
+from tabulate import tabulate
+
+from speedy_utils import multi_thread
+
+
+def split_indices_by_length(
+    lengths: list[int],
+    batch_size_by_mean_length: int,
+    random_seed: int,
+    verbose: bool,
+    shuffle: bool,
+    mean_length: Optional[int] = None,
+) -> list[list[int]]:
+    if mean_length is None:
+        mean_length = int(np.mean(lengths))
+    max_batch_length = mean_length * batch_size_by_mean_length
+
+    r = random.Random(random_seed)
+    indices = list(range(len(lengths)))
+
+    if shuffle:
+        r.shuffle(indices)
+
+    batches = []
+    current_batch = []
+    current_batch_length = 0
+
+    for idx in indices:
+        length = lengths[idx]
+        if current_batch_length + length <= max_batch_length:
+            current_batch.append(idx)
+            current_batch_length += length
+        else:
+            batches.append(current_batch)
+            current_batch = [idx]
+            current_batch_length = length
+
+    if current_batch:
+        batches.append(current_batch)
+
+    if verbose:
+        batch_lengths = [sum(lengths[idx] for idx in batch) for batch in batches]
+        desc = pd.Series(batch_lengths).describe()
+
+        table = [
+            ["New avg item len", desc["mean"]],
+            ["Number groups", len(batches)],
+            ["Max length", max_batch_length],
+        ]
+
+        print(tabulate(table, headers=["Metric", "Value"], tablefmt="pretty"))
+
+    return batches
+
+
+def group_messages_by_len(
+    messages, model_name="Qwen/Qwen2.5-7B-Instruct", batch_size=4, mean_length=512
+):
+    """
+    Groups a list of messages into batches based on token length and concatenates them.
+    Args:
+        messages (list[dict]): OpenAI message format, each dict should contain a "messages" key with a list of messages. ensure the system prompt are shared.
+        model_name (str): The name of the model to use for tokenization. Default is "Qwen/Qwen2.5-7B-Instruct".
+        batch_size (int): The number of messages to include in each batch. Default is 4.
+        mean_length (int): The mean length of tokens for each batch. Default is 512.
+    Returns:
+        list: A list of concatenated message dictionaries, where each dictionary contains a "messages" key with the grouped messages.
+    Raises:
+        ValueError: If the messages parameter is None.
+    """
+    if messages is None:
+        raise ValueError("messages parameter cannot be None")
+    from transformers.models.auto.tokenization_auto import AutoTokenizer
+
+    tokenizer = AutoTokenizer.from_pretrained(model_name)
+
+    def create_batches(messages):
+        def get_token_length(message):
+            ids = tokenizer.apply_chat_template(message["messages"][1:], tokenize=True)
+            return len(ids)
+
+        # lengths = [get_token_length(msg) for msg in messages]
+        lengths = multi_thread(get_token_length, messages, workers=64)
+        list_ids = split_indices_by_length(
+            lengths,
+            batch_size,
+            random_seed=0,
+            verbose=True,
+            shuffle=True,
+            mean_length=mean_length,
+        )
+        concatenated_messages = []
+
+        def concatenate_messages(conversations):
+            system_message = conversations[0][0]
+            turns = []
+            for conv in conversations:
+                turns.extend(conv[1:])
+            return {"messages": [system_message] + turns}
+
+        for batch_ids in list_ids:
+            if not batch_ids:
+                continue
+            conversations = [messages[i]["messages"] for i in batch_ids]
+            concatenated_messages.append(concatenate_messages(conversations))
+        return concatenated_messages
+
+    chunked_messages = create_batches(messages)
+    return chunked_messages
+
+__all__ = [
+    "split_indices_by_length",
+    "group_messages_by_len",
+]