specify-cli 0.12.12__tar.gz → 0.12.14__tar.gz

{specify_cli-0.12.12 → specify_cli-0.12.14}/CHANGELOG.md

@@ -2,6 +2,37 @@
 
 <!-- insert new changelog below this comment -->
 
+## [0.12.14] - 2026-07-13
+
+### Changed
+
+- [extension] Add Spec Kit Memory extension to community catalog (#3455)
+- Add Test-First Governance preset to community catalog (#3504)
+- Add Autonomous Run Governance preset to community catalog (#3501)
+- fix(workflows): validate command step input/options are mappings (#3262)
+- fix(presets): resolve() honors manifest-declared file: for installed presets (#3351)
+- fix(init): don't block on confirmation for 'init --here' without a TTY (#3236)
+- [extension] Add Quality Gates (Enforcement Layer) extension to community catalog (#3431)
+- fix(integrations): exit cleanly on unbalanced quote in --integration-options (#3457) (#3466)
+- fix(integrations): declare kiro-cli multi-install safe (#3471) (#3485)
+- fix(workflows): fail fan-in step on non-list wait_for instead of crashing (#3482)
+- chore: release 0.12.13, begin 0.12.14.dev0 development (#3498)
+
+## [0.12.13] - 2026-07-13
+
+### Changed
+
+- fix(workflows): fail switch step on non-mapping cases instead of crashing (#3481)
+- Cleanup agent-file-template.md (#2579)
+- fix: mark Kiro integration as multi-install safe (#3472)
+- fix: rewrite extension-relative subdir paths in generated command bodies (#3444)
+- fix(templates): point constitution sync checklist at installed command files (#3418)
+- feat(workflows): make shell step timeout configurable (#3327) (#3328)
+- docs: clarify that release tags keep the leading v prefix (#3463)
+- fix(workflows): don't crash on membership test against a non-iterable (#3448)
+- fix(workflows): if-step validate accepts falsy non-list else (#3264)
+- chore: release 0.12.12, begin 0.12.13.dev0 development (#3490)
+
 ## [0.12.12] - 2026-07-13
 
 ### Changed

{specify_cli-0.12.12 → specify_cli-0.12.14}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: specify-cli
-Version: 0.12.12
+Version: 0.12.14
 Summary: Specify CLI, part of GitHub Spec Kit. A tool to bootstrap your projects for Spec-Driven Development (SDD).
 License-File: LICENSE
 Requires-Python: >=3.11
@@ -65,7 +65,7 @@ Spec-Driven Development **flips the script** on traditional software development
 
 ### 1. Install Specify CLI
 
-Requires **[uv](https://docs.astral.sh/uv/)** ([install uv](./docs/install/uv.md)). Replace `vX.Y.Z` with the latest tag from [Releases](https://github.com/github/spec-kit/releases):
+Requires **[uv](https://docs.astral.sh/uv/)** ([install uv](./docs/install/uv.md)). Replace `vX.Y.Z` with the latest release tag from [Releases](https://github.com/github/spec-kit/releases) — keep the leading `v` (for example, `v0.12.11`, not `0.12.11`):
 
 ```bash
 uv tool install specify-cli --from git+https://github.com/github/spec-kit.git@vX.Y.Z

{specify_cli-0.12.12 → specify_cli-0.12.14}/README.md

@@ -45,7 +45,7 @@ Spec-Driven Development **flips the script** on traditional software development
 
 ### 1. Install Specify CLI
 
-Requires **[uv](https://docs.astral.sh/uv/)** ([install uv](./docs/install/uv.md)). Replace `vX.Y.Z` with the latest tag from [Releases](https://github.com/github/spec-kit/releases):
+Requires **[uv](https://docs.astral.sh/uv/)** ([install uv](./docs/install/uv.md)). Replace `vX.Y.Z` with the latest release tag from [Releases](https://github.com/github/spec-kit/releases) — keep the leading `v` (for example, `v0.12.11`, not `0.12.11`):
 
 ```bash
 uv tool install specify-cli --from git+https://github.com/github/spec-kit.git@vX.Y.Z

{specify_cli-0.12.12 → specify_cli-0.12.14}/docs/community/extensions.md

@@ -98,6 +98,7 @@ The following community-contributed extensions are available in [`catalog.commun
 | Project Health Check | Diagnose a Spec Kit project and report health issues across structure, agents, features, scripts, extensions, and git | `visibility` | Read-only | [spec-kit-doctor](https://github.com/KhawarHabibKhan/spec-kit-doctor) |
 | Project Status | Show current SDD workflow progress — active feature, artifact status, task completion, workflow phase, and extensions summary | `visibility` | Read-only | [spec-kit-status](https://github.com/KhawarHabibKhan/spec-kit-status) |
 | QA Testing Extension | Systematic QA testing with browser-driven or CLI-based validation of acceptance criteria from spec | `code` | Read-only | [spec-kit-qa](https://github.com/arunt14/spec-kit-qa) |
+| Quality Gates (Enforcement Layer) | Deterministic quality enforcement for Spec Kit projects at three boundaries — agent hooks, git pre-commit, CI — with one policy file and provable enforcement (attestations, canaries, verified parity). | `process` | Read+Write | [spec-gates](https://github.com/schwichtgit/spec-gates) |
 | RAG Azure Builder | Spec Kit extension for onboarding and operating an Azure RAG stack with guided workflows. | `process` | Read+Write | [spec-kit-extension-rag-azure-builder](https://github.com/Sertxito/spec-kit-extension-rag-azure-builder) |
 | Ralph Loop | Autonomous implementation loop using AI agent CLI | `code` | Read+Write | [spec-kit-ralph](https://github.com/Rubiss-Projects/spec-kit-ralph) |
 | Reconcile Extension | Reconcile implementation drift by surgically updating feature artifacts. | `docs` | Read+Write | [spec-kit-reconcile](https://github.com/stn1slv/spec-kit-reconcile) |
@@ -119,6 +120,7 @@ The following community-contributed extensions are available in [`catalog.commun
 | Spec Diagram | Auto-generate Mermaid diagrams of SDD workflow state, feature progress, and task dependencies | `visibility` | Read-only | [spec-kit-diagram-](https://github.com/Quratulain-bilal/spec-kit-diagram-) |
 | Spec Kit Discovery Extension | Run technical discovery commands for feasibility, technology selection, scenario-specific technical decisions, legacy codebase assessment, implementation understanding, and proof-of-concept validation | `process` | Read+Write | [spec-kit-discovery](https://github.com/bigsmartben/spec-kit-discovery) |
 | Spec Kit Figma | Agent-agnostic SpecKit extension that grounds spec, plan & task generation in Figma design context — REST + optional MCP, single/mono/multi-repo, macOS/Linux/Windows. | `integration` | Read+Write | [spec-kit-figma](https://github.com/Fyloss/spec-kit-figma) |
+| Spec Kit Memory | Recalls prior specs and decisions from configurable memory tools (e.g. memsearch) before SDLC stages, so planning and specification start from what the project already knows | `docs` | Read+Write | [spec-kit-memory](https://github.com/zaytsevand/spec-kit-memory) |
 | Spec Kit Preview | Generate evidence-backed low, mid, or high fidelity previews from Spec Kit artifacts as Markdown or self-contained HTML | `docs` | Read+Write | [spec-kit-preview](https://github.com/bigsmartben/spec-kit-preview) |
 | Spec Kit Schedule | Optimal multi-agent task scheduling via CP-SAT — DAG precedence, hallucination-aware caps, file-conflict avoidance, stochastic durations, replanning, and interactive HTML output | `process` | Read+Write | [spec-kit-schedule](https://github.com/jfranc38/spec-kit-schedule) |
 | Spec Kit TLDR | Render a feature's spec.md / plan.md into a review-oriented TLDR (self-contained HTML dashboard + PR-native Markdown) that surfaces risks for faster PR review. | `visibility` | Read+Write | [speckit-tldr](https://github.com/qurore/speckit-tldr) |

{specify_cli-0.12.12 → specify_cli-0.12.14}/docs/community/presets.md

@@ -11,6 +11,7 @@ The following community-contributed presets customize how Spec Kit behaves — o
 | Agent Parity Governance | Adds shared-guidance parity, audit-ready Spec-Kit run evidence, and agent-neutral model-routing guidance across a project's declared AI-agent instruction surfaces so agent guidance does not drift. | 6 templates, 3 commands | — | [spec-kit-preset-agent-parity-governance](https://github.com/hindermath/spec-kit-preset-agent-parity-governance) |
 | AIDE In-Place Migration | Adapts the AIDE extension workflow for in-place technology migrations (X → Y pattern) — adds migration objectives, verification gates, knowledge documents, and behavioral equivalence criteria | 2 templates, 8 commands | AIDE extension | [spec-kit-presets](https://github.com/mnriem/spec-kit-presets) |
 | Architecture Governance | Adds secure software architecture, STRIDE+CAPEC threat modeling, arc42 security cross-cutting concepts, S-ADRs, Zero Trust applicability, OWASP SAMM governance, BSI C3A cloud autonomy, BSI C5 cloud compliance assurance, and audit-ready Spec Kit run evidence | 13 templates, 3 commands | — | [spec-kit-preset-architecture-governance](https://github.com/hindermath/spec-kit-preset-architecture-governance) |
+| Autonomous Run Governance | Adds permission-bounded, evidence-first governance for autonomous Spec Kit delivery, convergence, resume, closeout, and retrospective learning. | 10 templates, 2 commands | — | [spec-kit-preset-autonomous-run-governance](https://github.com/hindermath/spec-kit-preset-autonomous-run-governance) |
 | Canon Core | Adapts original Spec Kit workflow to work together with Canon extension | 2 templates, 8 commands | — | [spec-kit-canon](https://github.com/maximiliamus/spec-kit-canon) |
 | Claude AskUserQuestion | Upgrades `/speckit.clarify` and `/speckit.checklist` on Claude Code from Markdown-table prompts to the native AskUserQuestion picker, with a recommended option and reasoning on every question | 2 commands | — | [spec-kit-preset-claude-ask-questions](https://github.com/0xrafasec/spec-kit-preset-claude-ask-questions) |
 | Command Density | Compacts the nine core Spec Kit command prompts while preserving scripts, handoffs, placeholders, hook output blocks, and rule structure | 9 commands | — | [spec-kit-preset-command-density](https://github.com/Xopoko/spec-kit-preset-command-density) |
@@ -28,6 +29,7 @@ The following community-contributed presets customize how Spec Kit behaves — o
 | SicarioSpec Core | Baseline secure-by-default Spec Kit governance profile. | 5 templates | — | [sicario-spec](https://github.com/dfirs1car1o/sicario-spec) |
 | Spec2Cloud | Spec-driven workflow tuned for shipping to Azure: spec → plan → tasks → implement → deploy | 5 templates, 8 commands | — | [spec2cloud](https://github.com/Azure-Samples/Spec2Cloud) |
 | Table of Contents Navigation | Adds a navigable Table of Contents to generated spec.md, plan.md, and tasks.md documents | 3 templates, 3 commands | — | [spec-kit-preset-toc-navigation](https://github.com/Quratulain-bilal/spec-kit-preset-toc-navigation) |
+| Test-First Governance | Governs TDD with coverage-complete BDD/ATDD Gherkin scenarios, explicit suite ownership, professional test reports, traceability, and risk-based quality gates. | 10 templates, 8 commands | — | [spec-kit-preset-test-first-governance](https://github.com/ka-zo/spec-kit-preset-test-first-governance) |
 | VS Code Ask Questions | Enhances the clarify command to use `vscode/askQuestions` for batched interactive questioning. | 1 command | — | [spec-kit-presets](https://github.com/fdcastel/spec-kit-presets) |
 | Workflow Preset | Behavior-first specification, design artifacts, and agent-native handoff orchestration — adds requirement-phase behavior drafts, formal BDD/UIF/behavior contracts, optional design artifacts, and scoped implementation handoffs with Core Agent, Vertical Planner Agent, and Worker Agent modes | 22 templates, 8 commands | — | [spec-kit-workflow-preset](https://github.com/bigsmartben/spec-kit-workflow-preset) |
 

{specify_cli-0.12.12 → specify_cli-0.12.14}/docs/install/one-time.md

@@ -11,7 +11,8 @@ If you want to try Spec Kit without installing it permanently, use `uvx` to run
 # Create a new project (latest from main)
 uvx --from git+https://github.com/github/spec-kit.git specify init <PROJECT_NAME>
 
-# Or target a specific release (replace vX.Y.Z with a tag from Releases)
+# Or target a specific release (replace vX.Y.Z with a tag from Releases;
+# keep the leading v, e.g. v0.12.11 not 0.12.11)
 uvx --from git+https://github.com/github/spec-kit.git@vX.Y.Z specify init <PROJECT_NAME>
 
 # Initialize in the current directory

{specify_cli-0.12.12 → specify_cli-0.12.14}/docs/install/pipx.md

@@ -7,7 +7,8 @@
 Pin a specific release tag for stability (check [Releases](https://github.com/github/spec-kit/releases) for the latest):
 
 ```bash
-# Install a specific stable release (recommended — replace vX.Y.Z with the latest tag)
+# Install a specific stable release (recommended — replace vX.Y.Z with the
+# latest tag, keeping the leading v, e.g. v0.12.11 not 0.12.11)
 pipx install git+https://github.com/github/spec-kit.git@vX.Y.Z
 
 # Or install latest from main (may include unreleased changes)

{specify_cli-0.12.12 → specify_cli-0.12.14}/docs/installation.md

@@ -15,7 +15,7 @@
 
 ### Persistent Installation (Recommended)
 
-Install once and use everywhere. Replace `vX.Y.Z` with a tag from [Releases](https://github.com/github/spec-kit/releases):
+Install once and use everywhere. Replace `vX.Y.Z` with a release tag from [Releases](https://github.com/github/spec-kit/releases) — keep the leading `v` (for example, `v0.12.11`, not `0.12.11`):
 
 > [!NOTE]
 > The command below requires **[uv](https://docs.astral.sh/uv/)**. If you see `command not found: uv`, [install uv first](./install/uv.md).

{specify_cli-0.12.12 → specify_cli-0.12.14}/extensions/catalog.community.json

@@ -1,6 +1,6 @@
 {
   "schema_version": "1.0",
-  "updated_at": "2026-07-10T00:00:00Z",
+  "updated_at": "2026-07-13T00:00:00Z",
   "catalog_url": "https://raw.githubusercontent.com/github/spec-kit/main/extensions/catalog.community.json",
   "extensions": {
     "aide": {
@@ -1427,6 +1427,57 @@
       "created_at": "2026-05-06T00:00:00Z",
       "updated_at": "2026-05-06T00:00:00Z"
     },
+    "gates": {
+      "name": "Quality Gates (Enforcement Layer)",
+      "id": "gates",
+      "description": "Deterministic quality enforcement for Spec Kit projects at three boundaries — agent hooks, git pre-commit, CI — with one policy file and provable enforcement (attestations, canaries, verified parity).",
+      "author": "schwichtgit",
+      "version": "0.1.0",
+      "download_url": "https://github.com/schwichtgit/spec-gates/releases/download/v0.1.0/gates-0.1.0.zip",
+      "repository": "https://github.com/schwichtgit/spec-gates",
+      "homepage": "https://github.com/schwichtgit/spec-gates",
+      "documentation": "https://github.com/schwichtgit/spec-gates/blob/main/docs/how-it-works.md",
+      "license": "MIT",
+      "category": "process",
+      "effect": "read-write",
+      "requires": {
+        "speckit_version": ">=0.12.0",
+        "tools": [
+          {
+            "name": "jq",
+            "required": true
+          },
+          {
+            "name": "git",
+            "required": true
+          },
+          {
+            "name": "node",
+            "required": false
+          },
+          {
+            "name": "shellcheck",
+            "required": false
+          }
+        ]
+      },
+      "provides": {
+        "commands": 5,
+        "hooks": 1
+      },
+      "tags": [
+        "quality",
+        "enforcement",
+        "hooks",
+        "ci",
+        "governance"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-07-09T00:00:00Z",
+      "updated_at": "2026-07-13T00:00:00Z"
+    },
     "github-issues": {
       "name": "GitHub Issues Integration 1",
       "id": "github-issues",
@@ -2217,6 +2268,42 @@
       "created_at": "2026-05-08T00:00:00Z",
       "updated_at": "2026-05-08T00:00:00Z"
     },
+    "memory": {
+      "name": "Spec Kit Memory",
+      "id": "memory",
+      "description": "Recalls prior specs and decisions from configurable memory tools (e.g. memsearch) before SDLC stages, so planning and specification start from what the project already knows.",
+      "author": "Andrey Zaytsev",
+      "version": "0.3.0",
+      "download_url": "https://github.com/zaytsevand/spec-kit-memory/archive/refs/tags/v0.3.0.zip",
+      "repository": "https://github.com/zaytsevand/spec-kit-memory",
+      "homepage": "https://github.com/zaytsevand/spec-kit-memory",
+      "documentation": "https://github.com/zaytsevand/spec-kit-memory/blob/main/README.md",
+      "changelog": "",
+      "license": "MIT",
+      "category": "docs",
+      "effect": "read-write",
+      "requires": {
+        "speckit_version": ">=0.2.0",
+        "tools": [
+          { "name": "memsearch", "required": false }
+        ]
+      },
+      "provides": {
+        "commands": 2,
+        "hooks": 3
+      },
+      "tags": [
+        "memory",
+        "recall",
+        "research",
+        "memsearch"
+      ],
+      "verified": false,
+      "downloads": 0,
+      "stars": 0,
+      "created_at": "2026-07-10T00:00:00Z",
+      "updated_at": "2026-07-10T00:00:00Z"
+    },
     "memory-loader": {
       "name": "Memory Loader",
       "id": "memory-loader",

{specify_cli-0.12.12 → specify_cli-0.12.14}/presets/ARCHITECTURE.md

@@ -158,8 +158,7 @@ presets/
         ├── plan-template.md
         ├── tasks-template.md
         ├── checklist-template.md
-        ├── constitution-template.md
-        └── agent-file-template.md
+        └── constitution-template.md
 ```
 
 ## Module Structure

{specify_cli-0.12.12 → specify_cli-0.12.14}/presets/catalog.community.json

@@ -1,6 +1,6 @@
 {
   "schema_version": "1.0",
-  "updated_at": "2026-06-30T00:00:00Z",
+  "updated_at": "2026-07-13T00:00:00Z",
   "catalog_url": "https://raw.githubusercontent.com/github/spec-kit/main/presets/catalog.community.json",
   "presets": {
     "a11y-governance": {
@@ -131,6 +131,34 @@
       "created_at": "2026-04-27T00:00:00Z",
       "updated_at": "2026-06-14T00:00:00Z"
     },
+    "autonomous-run-governance": {
+      "name": "Autonomous Run Governance",
+      "id": "autonomous-run-governance",
+      "version": "0.1.1",
+      "description": "Adds permission-bounded, evidence-first governance for autonomous Spec Kit delivery, convergence, resume, closeout, and retrospective learning.",
+      "author": "Thorsten Hindermann",
+      "repository": "https://github.com/hindermath/spec-kit-preset-autonomous-run-governance",
+      "download_url": "https://github.com/hindermath/spec-kit-preset-autonomous-run-governance/archive/refs/tags/v0.1.1.zip",
+      "homepage": "https://github.com/hindermath/spec-kit-preset-autonomous-run-governance",
+      "documentation": "https://github.com/hindermath/spec-kit-preset-autonomous-run-governance/blob/main/README.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.8.3"
+      },
+      "provides": {
+        "templates": 10,
+        "commands": 2
+      },
+      "tags": [
+        "autonomous",
+        "governance",
+        "evidence",
+        "permissions",
+        "retrospective"
+      ],
+      "created_at": "2026-07-13T00:00:00Z",
+      "updated_at": "2026-07-13T00:00:00Z"
+    },
     "canon-core": {
       "name": "Canon Core",
       "id": "canon-core",
@@ -618,6 +646,34 @@
       "created_at": "2026-04-30T00:00:00Z",
       "updated_at": "2026-04-30T00:00:00Z"
     },
+    "test-first-governance": {
+      "name": "Test-First Governance",
+      "id": "test-first-governance",
+      "version": "1.3.0",
+      "description": "Governs TDD with coverage-complete BDD/ATDD Gherkin scenarios, explicit suite ownership, professional test reports, traceability, and risk-based quality gates.",
+      "author": "Zoltán Katona, PhD",
+      "repository": "https://github.com/ka-zo/spec-kit-preset-test-first-governance",
+      "download_url": "https://github.com/ka-zo/spec-kit-preset-test-first-governance/archive/refs/tags/1.3.0.zip",
+      "homepage": "https://github.com/ka-zo/spec-kit-preset-test-first-governance",
+      "documentation": "https://github.com/ka-zo/spec-kit-preset-test-first-governance/blob/main/README.md",
+      "license": "MIT",
+      "requires": {
+        "speckit_version": ">=0.12.11"
+      },
+      "provides": {
+        "templates": 10,
+        "commands": 8
+      },
+      "tags": [
+        "tdd",
+        "bdd",
+        "atdd",
+        "quality-gates",
+        "traceability"
+      ],
+      "created_at": "2026-07-13T00:00:00Z",
+      "updated_at": "2026-07-13T00:00:00Z"
+    },
     "toc-navigation": {
       "name": "Table of Contents Navigation",
       "id": "toc-navigation",

{specify_cli-0.12.12 → specify_cli-0.12.14}/presets/self-test/preset.yml

@@ -44,12 +44,6 @@ provides:
       description: "Self-test constitution template"
       replaces: "constitution-template"
 
-    - type: "template"
-      name: "agent-file-template"
-      file: "templates/agent-file-template.md"
-      description: "Self-test agent file template"
-      replaces: "agent-file-template"
-
     - type: "command"
       name: "speckit.specify"
       file: "commands/speckit.specify.md"

{specify_cli-0.12.12 → specify_cli-0.12.14}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "specify-cli"
-version = "0.12.12"
+version = "0.12.14"
 description = "Specify CLI, part of GitHub Spec Kit. A tool to bootstrap your projects for Spec-Driven Development (SDD)."
 readme = "README.md"
 requires-python = ">=3.11"

{specify_cli-0.12.12 → specify_cli-0.12.14}/src/specify_cli/agents.py

@@ -213,6 +213,52 @@ class CommandRegistrar:
             ".specify.specify/", ".specify/"
         )
 
+    @staticmethod
+    def rewrite_extension_paths(
+        text: str, extension_id: str, extension_dir: Path
+    ) -> str:
+        """Rewrite extension-relative paths to their installed locations.
+
+        Extension command bodies reference bundled files relative to the
+        extension root (e.g. ``agents/control/commander.md``). After install
+        those files live under ``.specify/extensions/<id>/``, so bare
+        references would resolve against the workspace root and never be
+        found (#2101).
+
+        Only directories that actually exist inside *extension_dir* are
+        rewritten, keeping the behaviour conservative and avoiding false
+        positives on prose. ``commands`` (slash-command sources), ``specs``
+        (user project artifacts) and dot-directories are never rewritten.
+        """
+        if not isinstance(text, str) or not text:
+            return text
+
+        skip = {"commands", ".git", "specs"}
+        try:
+            subdirs = [
+                entry.name
+                for entry in extension_dir.iterdir()
+                if entry.is_dir()
+                and entry.name not in skip
+                and not entry.name.startswith(".")
+            ]
+        except OSError:
+            return text
+
+        for subdir in subdirs:
+            # Only rewrite relative references (subdir/... or ./subdir/...);
+            # absolute paths like /subdir/... keep their meaning. Use a
+            # callable replacement: subdir/extension_id come from the
+            # filesystem and could contain backslashes or "\1"-like
+            # sequences, which would corrupt a string replacement template.
+            replacement = f".specify/extensions/{extension_id}/{subdir}/"
+            text = re.sub(
+                r'(^|[\s`"\'(])(?:\./)?' + re.escape(subdir) + "/",
+                lambda m: m.group(1) + replacement,
+                text,
+            )
+        return text
+
     def render_markdown_command(
         self, frontmatter: dict, body: str, source_id: str, context_note: str = None
     ) -> str:
@@ -639,6 +685,9 @@ class CommandRegistrar:
                         frontmatter[key] = core_frontmatter[key]
                 frontmatter.pop("strategy", None)
 
+            if extension_id:
+                body = self.rewrite_extension_paths(body, extension_id, source_root)
+
             frontmatter = self._adjust_script_paths(
                 frontmatter, extension_id=extension_id
             )

{specify_cli-0.12.12 → specify_cli-0.12.14}/src/specify_cli/commands/init.py

@@ -220,16 +220,45 @@ def register(app: typer.Typer) -> None:
                 console.print(
                     f"[yellow]Warning:[/yellow] Current directory is not empty ({len(existing_items)} items)"
                 )
-                console.print(
-                    "[yellow]Template files will be merged with existing content and may overwrite existing files[/yellow]"
-                )
                 if force:
+                    # Proceeding: the merge/overwrite warning is accurate here.
+                    console.print(
+                        "[yellow]Template files will be merged with existing content and may overwrite existing files[/yellow]"
+                    )
                     console.print(
                         "[cyan]--force supplied: skipping confirmation and proceeding with merge[/cyan]"
                     )
                 else:
-                    response = typer.confirm("Do you want to continue?")
-                    if not response:
+                    # Fold the merge risk into the confirmation prompt rather than
+                    # printing it unconditionally first: on the EOF/no-input path
+                    # below the command exits without changing anything, so a
+                    # standalone "will be merged" line would mislead. Interactive
+                    # users still see the risk as part of the question.
+                    #
+                    # Call typer.confirm normally so piped y/n is honored — e.g.
+                    # `echo y | specify init --here` keeps reaching the
+                    # non-destructive preserve-merge path.
+                    try:
+                        proceed = typer.confirm(
+                            "Template files will be merged with existing content "
+                            "and may overwrite existing files. Do you want to continue?"
+                        )
+                    except (typer.Abort, EOFError):
+                        # typer.confirm raises Abort for BOTH an interactive Ctrl+C
+                        # and an EOF on closed/empty stdin. Distinguish them: a real
+                        # TTY cancellation is a normal exit (0, "cancelled"), while a
+                        # missing-input EOF (non-interactive) becomes an actionable
+                        # error pointing at --force.
+                        if _stdin_is_interactive():
+                            console.print("[yellow]Operation cancelled[/yellow]")
+                            raise typer.Exit(0) from None
+                        console.print(
+                            "[red]Error:[/red] Current directory is not empty and no "
+                            "confirmation input is available. Re-run with "
+                            "[bold]--force[/bold] to merge into it."
+                        )
+                        raise typer.Exit(1) from None
+                    if not proceed:
                         console.print("[yellow]Operation cancelled[/yellow]")
                         raise typer.Exit(0)
         else:

{specify_cli-0.12.12 → specify_cli-0.12.14}/src/specify_cli/extensions/__init__.py

@@ -1078,6 +1078,11 @@ class ExtensionManager:
             frontmatter = registrar._adjust_script_paths(
                 frontmatter, extension_id=manifest.id
             )
+            # Mirror the register_commands() rewrite (#2101): resolve
+            # extension-relative subdir references (agents/, knowledge-base/,
+            # etc.) to their installed .specify/extensions/<id>/ location
+            # before the generic placeholder/path resolution below.
+            body = registrar.rewrite_extension_paths(body, manifest.id, extension_dir)
             body = registrar.resolve_skill_placeholders(
                 selected_ai, frontmatter, body, self.project_root, extension_id=manifest.id
             )

{specify_cli-0.12.12 → specify_cli-0.12.14}/src/specify_cli/integrations/_helpers.py

@@ -190,7 +190,15 @@ def _parse_integration_options(integration: Any, raw_options: str) -> dict[str,
     """
     import shlex
     parsed: dict[str, Any] = {}
-    tokens = shlex.split(raw_options)
+    try:
+        tokens = shlex.split(raw_options)
+    except ValueError as exc:
+        # An unbalanced quote (e.g. --integration-options='--commands-dir "foo')
+        # makes shlex raise "No closing quotation". Translate it into the same
+        # clean exit-1 UX as every other bad-input path below rather than
+        # letting a raw traceback escape.
+        console.print(f"[red]Error:[/red] Could not parse integration options: {exc}.")
+        raise typer.Exit(1)
     declared_options = list(integration.options())
     declared = {opt.name.lstrip("-"): opt for opt in declared_options}
     allowed = ", ".join(sorted(opt.name for opt in declared_options))

{specify_cli-0.12.12 → specify_cli-0.12.14}/src/specify_cli/integrations/kiro_cli/__init__.py

@@ -13,6 +13,7 @@ _KIRO_ARG_FALLBACK = "(the user will provide the argument in this conversation)"
 
 class KiroCliIntegration(MarkdownIntegration):
     key = "kiro-cli"
+    multi_install_safe = True
     config = {
         "name": "Kiro CLI",
         "folder": ".kiro/",
@@ -26,3 +27,10 @@ class KiroCliIntegration(MarkdownIntegration):
         "args": _KIRO_ARG_FALLBACK,
         "extension": ".md",
     }
+
+    # Kiro CLI keeps everything under a static, isolated agent root
+    # (``.kiro/`` with commands in ``.kiro/prompts``) that no other
+    # integration writes to, so it is safe to install alongside others
+    # (issue #3471). The registry's multi-install-safe contract tests
+    # enforce that isolation for every integration setting this flag.
+    multi_install_safe = True