PyPI - spearfish - Versions diffs - 0.1.0__tar.gz - Mend

spearfish 0.1.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (75) hide show

spearfish-0.1.0/Cargo.lock +1667 -0
spearfish-0.1.0/Cargo.toml +65 -0
spearfish-0.1.0/LICENSE +28 -0
spearfish-0.1.0/PKG-INFO +196 -0
spearfish-0.1.0/README.md +174 -0
spearfish-0.1.0/crates/index/Cargo.toml +21 -0
spearfish-0.1.0/crates/index/src/build.rs +801 -0
spearfish-0.1.0/crates/index/src/lib.rs +935 -0
spearfish-0.1.0/crates/index/src/store.rs +249 -0
spearfish-0.1.0/crates/index/tests/build.rs +348 -0
spearfish-0.1.0/crates/lcp-core/Cargo.toml +16 -0
spearfish-0.1.0/crates/lcp-core/examples/level_stats.rs +49 -0
spearfish-0.1.0/crates/lcp-core/src/bits.rs +324 -0
spearfish-0.1.0/crates/lcp-core/src/encode.rs +84 -0
spearfish-0.1.0/crates/lcp-core/src/hpc.rs +125 -0
spearfish-0.1.0/crates/lcp-core/src/lcp.rs +1226 -0
spearfish-0.1.0/crates/lcp-core/src/lib.rs +92 -0
spearfish-0.1.0/crates/lcp-core/src/locality.rs +276 -0
spearfish-0.1.0/crates/lcp-core/src/simd.rs +217 -0
spearfish-0.1.0/crates/lcp-core/tests/simd_env.rs +65 -0
spearfish-0.1.0/crates/lcp-core/tests/vs_lcptools.rs +83 -0
spearfish-0.1.0/crates/lcp-oracle-sys/Cargo.toml +14 -0
spearfish-0.1.0/crates/lcp-oracle-sys/build.rs +22 -0
spearfish-0.1.0/crates/lcp-oracle-sys/lcptools/LICENSE +28 -0
spearfish-0.1.0/crates/lcp-oracle-sys/lcptools/VENDORED.md +1 -0
spearfish-0.1.0/crates/lcp-oracle-sys/lcptools/config.h.in +24 -0
spearfish-0.1.0/crates/lcp-oracle-sys/lcptools/core.c +387 -0
spearfish-0.1.0/crates/lcp-oracle-sys/lcptools/core.h +245 -0
spearfish-0.1.0/crates/lcp-oracle-sys/lcptools/encoding.c +90 -0
spearfish-0.1.0/crates/lcp-oracle-sys/lcptools/encoding.h +85 -0
spearfish-0.1.0/crates/lcp-oracle-sys/lcptools/lps.c +619 -0
spearfish-0.1.0/crates/lcp-oracle-sys/lcptools/lps.h +247 -0
spearfish-0.1.0/crates/lcp-oracle-sys/src/lib.rs +79 -0
spearfish-0.1.0/crates/map/Cargo.toml +22 -0
spearfish-0.1.0/crates/map/examples/refine_check.rs +166 -0
spearfish-0.1.0/crates/map/examples/tiedebug.rs +92 -0
spearfish-0.1.0/crates/map/proptest-regressions/align.txt +8 -0
spearfish-0.1.0/crates/map/src/align.rs +2462 -0
spearfish-0.1.0/crates/map/src/anchor.rs +427 -0
spearfish-0.1.0/crates/map/src/chain.rs +1299 -0
spearfish-0.1.0/crates/map/src/lib.rs +2043 -0
spearfish-0.1.0/crates/map/src/refine.rs +471 -0
spearfish-0.1.0/crates/map/src/rescue.rs +430 -0
spearfish-0.1.0/crates/map/src/stats.rs +68 -0
spearfish-0.1.0/crates/map/tests/refine.rs +162 -0
spearfish-0.1.0/crates/map/tests/select.rs +144 -0
spearfish-0.1.0/crates/map/tests/toy.rs +234 -0
spearfish-0.1.0/crates/py-spearfish/.gitignore +5 -0
spearfish-0.1.0/crates/py-spearfish/Cargo.toml +31 -0
spearfish-0.1.0/crates/py-spearfish/LICENSE +28 -0
spearfish-0.1.0/crates/py-spearfish/README.md +174 -0
spearfish-0.1.0/crates/py-spearfish/src/lib.rs +1749 -0
spearfish-0.1.0/crates/py-spearfish/tests/test_spearfish.py +502 -0
spearfish-0.1.0/crates/rad/Cargo.toml +14 -0
spearfish-0.1.0/crates/rad/src/lib.rs +906 -0
spearfish-0.1.0/crates/seeds/Cargo.toml +13 -0
spearfish-0.1.0/crates/seeds/examples/throughput.rs +46 -0
spearfish-0.1.0/crates/seeds/src/base.rs +159 -0
spearfish-0.1.0/crates/seeds/src/kmer.rs +324 -0
spearfish-0.1.0/crates/seeds/src/lib.rs +90 -0
spearfish-0.1.0/crates/seeds/src/linked.rs +218 -0
spearfish-0.1.0/crates/seeds/src/spec.rs +208 -0
spearfish-0.1.0/crates/spearfish/Cargo.toml +43 -0
spearfish-0.1.0/crates/spearfish/README.md +114 -0
spearfish-0.1.0/crates/spearfish/build.rs +75 -0
spearfish-0.1.0/crates/spearfish/src/lib.rs +769 -0
spearfish-0.1.0/crates/spearfish/src/output.rs +354 -0
spearfish-0.1.0/crates/spearfish/src/provenance.rs +276 -0
spearfish-0.1.0/crates/spearfish/src/settings.rs +710 -0
spearfish-0.1.0/crates/spearfish/tests/api.rs +249 -0
spearfish-0.1.0/pyproject.toml +34 -0
spearfish-0.1.0/python/spearfish/__init__.py +46 -0
spearfish-0.1.0/python/spearfish/_frames.py +69 -0
spearfish-0.1.0/python/spearfish/_spearfish.pyi +172 -0
spearfish-0.1.0/python/spearfish/py.typed +0 -0

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