spacr 0.9.24__tar.gz → 0.9.26__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (370) hide show
  1. {spacr-0.9.24/spacr.egg-info → spacr-0.9.26}/PKG-INFO +6 -3
  2. {spacr-0.9.24 → spacr-0.9.26}/README.rst +5 -2
  3. {spacr-0.9.24 → spacr-0.9.26}/setup.py +1 -1
  4. {spacr-0.9.24 → spacr-0.9.26/spacr.egg-info}/PKG-INFO +6 -3
  5. {spacr-0.9.24 → spacr-0.9.26}/LICENSE +0 -0
  6. {spacr-0.9.24 → spacr-0.9.26}/MANIFEST.in +0 -0
  7. {spacr-0.9.24 → spacr-0.9.26}/deploy_docs.sh +0 -0
  8. {spacr-0.9.24 → spacr-0.9.26}/docs/.doctrees/environment.pickle +0 -0
  9. {spacr-0.9.24 → spacr-0.9.26}/docs/_images/logo_spacr.png +0 -0
  10. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/SetupDict.html +0 -0
  11. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/core/BasePredictor.html +0 -0
  12. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/core/BaseTrainer.html +0 -0
  13. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/core/Baseline/Predictor.html +0 -0
  14. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/core/Baseline/Trainer.html +0 -0
  15. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/core/Baseline/utils.html +0 -0
  16. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/core/MEDIAR/EnsemblePredictor.html +0 -0
  17. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/core/MEDIAR/Predictor.html +0 -0
  18. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/core/MEDIAR/Trainer.html +0 -0
  19. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/core/MEDIAR/utils.html +0 -0
  20. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/core/utils.html +0 -0
  21. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/evaluate.html +0 -0
  22. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/generate_mapping.html +0 -0
  23. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/index.html +0 -0
  24. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/main.html +0 -0
  25. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/predict.html +0 -0
  26. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/app_annotate.html +0 -0
  27. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/app_classify.html +0 -0
  28. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/app_make_masks.html +0 -0
  29. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/app_mask.html +0 -0
  30. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/app_measure.html +0 -0
  31. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/app_sequencing.html +0 -0
  32. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/app_umap.html +0 -0
  33. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/chat_bot.html +0 -0
  34. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/core.html +0 -0
  35. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/deep_spacr.html +0 -0
  36. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/gui.html +0 -0
  37. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/gui_core.html +0 -0
  38. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/gui_elements.html +0 -0
  39. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/gui_utils.html +0 -0
  40. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/io.html +0 -0
  41. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/logger.html +0 -0
  42. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/measure.html +0 -0
  43. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/mediar.html +0 -0
  44. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/ml.html +0 -0
  45. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/plot.html +0 -0
  46. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/sequencing.html +0 -0
  47. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/settings.html +0 -0
  48. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/sim.html +0 -0
  49. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/sp_stats.html +0 -0
  50. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/spacr_cellpose.html +0 -0
  51. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/submodules.html +0 -0
  52. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/timelapse.html +0 -0
  53. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/toxo.html +0 -0
  54. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/utils.html +0 -0
  55. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/spacr/version.html +0 -0
  56. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/train_tools/data_utils/custom/CellAware.html +0 -0
  57. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/train_tools/data_utils/custom/LoadImage.html +0 -0
  58. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/train_tools/data_utils/custom/NormalizeImage.html +0 -0
  59. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/train_tools/data_utils/datasetter.html +0 -0
  60. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/train_tools/data_utils/transforms.html +0 -0
  61. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/train_tools/data_utils/utils.html +0 -0
  62. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/train_tools/measures.html +0 -0
  63. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/train_tools/models/MEDIARFormer.html +0 -0
  64. {spacr-0.9.24 → spacr-0.9.26}/docs/_modules/train_tools/utils.html +0 -0
  65. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/SetupDict/index.rst.txt +0 -0
  66. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/core/BasePredictor/index.rst.txt +0 -0
  67. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/core/BaseTrainer/index.rst.txt +0 -0
  68. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/core/Baseline/Predictor/index.rst.txt +0 -0
  69. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/core/Baseline/Trainer/index.rst.txt +0 -0
  70. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/core/Baseline/index.rst.txt +0 -0
  71. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/core/Baseline/utils/index.rst.txt +0 -0
  72. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/core/MEDIAR/EnsemblePredictor/index.rst.txt +0 -0
  73. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/core/MEDIAR/Predictor/index.rst.txt +0 -0
  74. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/core/MEDIAR/Trainer/index.rst.txt +0 -0
  75. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/core/MEDIAR/index.rst.txt +0 -0
  76. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/core/MEDIAR/utils/index.rst.txt +0 -0
  77. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/core/index.rst.txt +0 -0
  78. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/core/utils/index.rst.txt +0 -0
  79. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/evaluate/index.rst.txt +0 -0
  80. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/generate_mapping/index.rst.txt +0 -0
  81. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/index.rst.txt +0 -0
  82. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/main/index.rst.txt +0 -0
  83. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/predict/index.rst.txt +0 -0
  84. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/app_annotate/index.rst.txt +0 -0
  85. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/app_classify/index.rst.txt +0 -0
  86. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/app_make_masks/index.rst.txt +0 -0
  87. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/app_mask/index.rst.txt +0 -0
  88. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/app_measure/index.rst.txt +0 -0
  89. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/app_sequencing/index.rst.txt +0 -0
  90. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/app_umap/index.rst.txt +0 -0
  91. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/chat_bot/index.rst.txt +0 -0
  92. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/core/index.rst.txt +0 -0
  93. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/deep_spacr/index.rst.txt +0 -0
  94. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/gui/index.rst.txt +0 -0
  95. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/gui_core/index.rst.txt +0 -0
  96. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/gui_elements/index.rst.txt +0 -0
  97. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/gui_utils/index.rst.txt +0 -0
  98. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/index.rst.txt +0 -0
  99. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/io/index.rst.txt +0 -0
  100. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/logger/index.rst.txt +0 -0
  101. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/measure/index.rst.txt +0 -0
  102. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/mediar/index.rst.txt +0 -0
  103. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/ml/index.rst.txt +0 -0
  104. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/openai/index.rst.txt +0 -0
  105. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/plot/index.rst.txt +0 -0
  106. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/sequencing/index.rst.txt +0 -0
  107. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/settings/index.rst.txt +0 -0
  108. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/sim/index.rst.txt +0 -0
  109. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/sp_stats/index.rst.txt +0 -0
  110. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/spacr_cellpose/index.rst.txt +0 -0
  111. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/submodules/index.rst.txt +0 -0
  112. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/timelapse/index.rst.txt +0 -0
  113. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/toxo/index.rst.txt +0 -0
  114. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/utils/index.rst.txt +0 -0
  115. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/spacr/version/index.rst.txt +0 -0
  116. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/train_tools/data_utils/custom/CellAware/index.rst.txt +0 -0
  117. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/train_tools/data_utils/custom/LoadImage/index.rst.txt +0 -0
  118. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/train_tools/data_utils/custom/NormalizeImage/index.rst.txt +0 -0
  119. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/train_tools/data_utils/custom/index.rst.txt +0 -0
  120. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/train_tools/data_utils/datasetter/index.rst.txt +0 -0
  121. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/train_tools/data_utils/index.rst.txt +0 -0
  122. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/train_tools/data_utils/transforms/index.rst.txt +0 -0
  123. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/train_tools/data_utils/utils/index.rst.txt +0 -0
  124. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/train_tools/index.rst.txt +0 -0
  125. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/train_tools/measures/index.rst.txt +0 -0
  126. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/train_tools/models/MEDIARFormer/index.rst.txt +0 -0
  127. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/train_tools/models/index.rst.txt +0 -0
  128. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/api/train_tools/utils/index.rst.txt +0 -0
  129. {spacr-0.9.24 → spacr-0.9.26}/docs/_sources/index.rst.txt +0 -0
  130. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/basic.css +0 -0
  131. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/badge_only.css +0 -0
  132. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/Roboto-Slab-Bold.woff +0 -0
  133. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/Roboto-Slab-Bold.woff2 +0 -0
  134. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/Roboto-Slab-Regular.woff +0 -0
  135. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/Roboto-Slab-Regular.woff2 +0 -0
  136. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/fontawesome-webfont.eot +0 -0
  137. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/fontawesome-webfont.svg +0 -0
  138. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/fontawesome-webfont.ttf +0 -0
  139. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/fontawesome-webfont.woff +0 -0
  140. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/fontawesome-webfont.woff2 +0 -0
  141. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/lato-bold-italic.woff +0 -0
  142. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/lato-bold-italic.woff2 +0 -0
  143. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/lato-bold.woff +0 -0
  144. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/lato-bold.woff2 +0 -0
  145. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/lato-normal-italic.woff +0 -0
  146. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/lato-normal-italic.woff2 +0 -0
  147. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/lato-normal.woff +0 -0
  148. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/fonts/lato-normal.woff2 +0 -0
  149. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/css/theme.css +0 -0
  150. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/doctools.js +0 -0
  151. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/documentation_options.js +0 -0
  152. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/file.png +0 -0
  153. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-bold.eot +0 -0
  154. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-bold.ttf +0 -0
  155. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-bold.woff +0 -0
  156. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-bold.woff2 +0 -0
  157. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-bolditalic.eot +0 -0
  158. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-bolditalic.ttf +0 -0
  159. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-bolditalic.woff +0 -0
  160. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-bolditalic.woff2 +0 -0
  161. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-italic.eot +0 -0
  162. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-italic.ttf +0 -0
  163. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-italic.woff +0 -0
  164. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-italic.woff2 +0 -0
  165. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-regular.eot +0 -0
  166. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-regular.ttf +0 -0
  167. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-regular.woff +0 -0
  168. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/Lato/lato-regular.woff2 +0 -0
  169. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot +0 -0
  170. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf +0 -0
  171. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff +0 -0
  172. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2 +0 -0
  173. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot +0 -0
  174. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf +0 -0
  175. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff +0 -0
  176. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 +0 -0
  177. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/graphviz.css +0 -0
  178. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/js/badge_only.js +0 -0
  179. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/js/theme.js +0 -0
  180. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/js/versions.js +0 -0
  181. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/language_data.js +0 -0
  182. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/logo_spacr.png +0 -0
  183. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/minus.png +0 -0
  184. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/plus.png +0 -0
  185. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/pygments.css +0 -0
  186. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/searchtools.js +0 -0
  187. {spacr-0.9.24 → spacr-0.9.26}/docs/_static/sphinx_highlight.js +0 -0
  188. {spacr-0.9.24 → spacr-0.9.26}/docs/api/SetupDict/index.html +0 -0
  189. {spacr-0.9.24 → spacr-0.9.26}/docs/api/core/BasePredictor/index.html +0 -0
  190. {spacr-0.9.24 → spacr-0.9.26}/docs/api/core/BaseTrainer/index.html +0 -0
  191. {spacr-0.9.24 → spacr-0.9.26}/docs/api/core/Baseline/Predictor/index.html +0 -0
  192. {spacr-0.9.24 → spacr-0.9.26}/docs/api/core/Baseline/Trainer/index.html +0 -0
  193. {spacr-0.9.24 → spacr-0.9.26}/docs/api/core/Baseline/index.html +0 -0
  194. {spacr-0.9.24 → spacr-0.9.26}/docs/api/core/Baseline/utils/index.html +0 -0
  195. {spacr-0.9.24 → spacr-0.9.26}/docs/api/core/MEDIAR/EnsemblePredictor/index.html +0 -0
  196. {spacr-0.9.24 → spacr-0.9.26}/docs/api/core/MEDIAR/Predictor/index.html +0 -0
  197. {spacr-0.9.24 → spacr-0.9.26}/docs/api/core/MEDIAR/Trainer/index.html +0 -0
  198. {spacr-0.9.24 → spacr-0.9.26}/docs/api/core/MEDIAR/index.html +0 -0
  199. {spacr-0.9.24 → spacr-0.9.26}/docs/api/core/MEDIAR/utils/index.html +0 -0
  200. {spacr-0.9.24 → spacr-0.9.26}/docs/api/core/index.html +0 -0
  201. {spacr-0.9.24 → spacr-0.9.26}/docs/api/core/utils/index.html +0 -0
  202. {spacr-0.9.24 → spacr-0.9.26}/docs/api/evaluate/index.html +0 -0
  203. {spacr-0.9.24 → spacr-0.9.26}/docs/api/generate_mapping/index.html +0 -0
  204. {spacr-0.9.24 → spacr-0.9.26}/docs/api/index.html +0 -0
  205. {spacr-0.9.24 → spacr-0.9.26}/docs/api/main/index.html +0 -0
  206. {spacr-0.9.24 → spacr-0.9.26}/docs/api/predict/index.html +0 -0
  207. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/app_annotate/index.html +0 -0
  208. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/app_classify/index.html +0 -0
  209. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/app_make_masks/index.html +0 -0
  210. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/app_mask/index.html +0 -0
  211. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/app_measure/index.html +0 -0
  212. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/app_sequencing/index.html +0 -0
  213. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/app_umap/index.html +0 -0
  214. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/chat_bot/index.html +0 -0
  215. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/core/index.html +0 -0
  216. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/deep_spacr/index.html +0 -0
  217. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/gui/index.html +0 -0
  218. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/gui_core/index.html +0 -0
  219. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/gui_elements/index.html +0 -0
  220. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/gui_utils/index.html +0 -0
  221. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/index.html +0 -0
  222. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/io/index.html +0 -0
  223. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/logger/index.html +0 -0
  224. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/measure/index.html +0 -0
  225. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/mediar/index.html +0 -0
  226. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/ml/index.html +0 -0
  227. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/openai/index.html +0 -0
  228. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/plot/index.html +0 -0
  229. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/sequencing/index.html +0 -0
  230. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/settings/index.html +0 -0
  231. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/sim/index.html +0 -0
  232. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/sp_stats/index.html +0 -0
  233. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/spacr_cellpose/index.html +0 -0
  234. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/submodules/index.html +0 -0
  235. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/timelapse/index.html +0 -0
  236. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/toxo/index.html +0 -0
  237. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/utils/index.html +0 -0
  238. {spacr-0.9.24 → spacr-0.9.26}/docs/api/spacr/version/index.html +0 -0
  239. {spacr-0.9.24 → spacr-0.9.26}/docs/api/train_tools/data_utils/custom/CellAware/index.html +0 -0
  240. {spacr-0.9.24 → spacr-0.9.26}/docs/api/train_tools/data_utils/custom/LoadImage/index.html +0 -0
  241. {spacr-0.9.24 → spacr-0.9.26}/docs/api/train_tools/data_utils/custom/NormalizeImage/index.html +0 -0
  242. {spacr-0.9.24 → spacr-0.9.26}/docs/api/train_tools/data_utils/custom/index.html +0 -0
  243. {spacr-0.9.24 → spacr-0.9.26}/docs/api/train_tools/data_utils/datasetter/index.html +0 -0
  244. {spacr-0.9.24 → spacr-0.9.26}/docs/api/train_tools/data_utils/index.html +0 -0
  245. {spacr-0.9.24 → spacr-0.9.26}/docs/api/train_tools/data_utils/transforms/index.html +0 -0
  246. {spacr-0.9.24 → spacr-0.9.26}/docs/api/train_tools/data_utils/utils/index.html +0 -0
  247. {spacr-0.9.24 → spacr-0.9.26}/docs/api/train_tools/index.html +0 -0
  248. {spacr-0.9.24 → spacr-0.9.26}/docs/api/train_tools/measures/index.html +0 -0
  249. {spacr-0.9.24 → spacr-0.9.26}/docs/api/train_tools/models/MEDIARFormer/index.html +0 -0
  250. {spacr-0.9.24 → spacr-0.9.26}/docs/api/train_tools/models/index.html +0 -0
  251. {spacr-0.9.24 → spacr-0.9.26}/docs/api/train_tools/utils/index.html +0 -0
  252. {spacr-0.9.24 → spacr-0.9.26}/docs/genindex.html +0 -0
  253. {spacr-0.9.24 → spacr-0.9.26}/docs/index.html +0 -0
  254. {spacr-0.9.24 → spacr-0.9.26}/docs/objects.inv +0 -0
  255. {spacr-0.9.24 → spacr-0.9.26}/docs/py-modindex.html +0 -0
  256. {spacr-0.9.24 → spacr-0.9.26}/docs/search.html +0 -0
  257. {spacr-0.9.24 → spacr-0.9.26}/docs/searchindex.js +0 -0
  258. {spacr-0.9.24 → spacr-0.9.26}/docs/source/_static/custom.css +0 -0
  259. {spacr-0.9.24 → spacr-0.9.26}/docs/source/_static/logo_spacr.png +0 -0
  260. {spacr-0.9.24 → spacr-0.9.26}/docs/source/conf.py +0 -0
  261. {spacr-0.9.24 → spacr-0.9.26}/docs/source/index.rst +0 -0
  262. {spacr-0.9.24 → spacr-0.9.26}/environment.yaml +0 -0
  263. {spacr-0.9.24 → spacr-0.9.26}/fonts/OpenSans-Regular.ttf +0 -0
  264. {spacr-0.9.24 → spacr-0.9.26}/requirements.txt +0 -0
  265. {spacr-0.9.24 → spacr-0.9.26}/rtd_trigger.txt +0 -0
  266. {spacr-0.9.24 → spacr-0.9.26}/setup.cfg +0 -0
  267. {spacr-0.9.24 → spacr-0.9.26}/setup_docs.sh +0 -0
  268. {spacr-0.9.24 → spacr-0.9.26}/spacr/__init__.py +0 -0
  269. {spacr-0.9.24 → spacr-0.9.26}/spacr/__main__.py +0 -0
  270. {spacr-0.9.24 → spacr-0.9.26}/spacr/app_annotate.py +0 -0
  271. {spacr-0.9.24 → spacr-0.9.26}/spacr/app_classify.py +0 -0
  272. {spacr-0.9.24 → spacr-0.9.26}/spacr/app_make_masks.py +0 -0
  273. {spacr-0.9.24 → spacr-0.9.26}/spacr/app_mask.py +0 -0
  274. {spacr-0.9.24 → spacr-0.9.26}/spacr/app_measure.py +0 -0
  275. {spacr-0.9.24 → spacr-0.9.26}/spacr/app_sequencing.py +0 -0
  276. {spacr-0.9.24 → spacr-0.9.26}/spacr/app_umap.py +0 -0
  277. {spacr-0.9.24 → spacr-0.9.26}/spacr/chat_bot.py +0 -0
  278. {spacr-0.9.24 → spacr-0.9.26}/spacr/core.py +0 -0
  279. {spacr-0.9.24 → spacr-0.9.26}/spacr/deep_spacr.py +0 -0
  280. {spacr-0.9.24 → spacr-0.9.26}/spacr/gui.py +0 -0
  281. {spacr-0.9.24 → spacr-0.9.26}/spacr/gui_core.py +0 -0
  282. {spacr-0.9.24 → spacr-0.9.26}/spacr/gui_elements.py +0 -0
  283. {spacr-0.9.24 → spacr-0.9.26}/spacr/gui_utils.py +0 -0
  284. {spacr-0.9.24 → spacr-0.9.26}/spacr/io.py +0 -0
  285. {spacr-0.9.24 → spacr-0.9.26}/spacr/logger.py +0 -0
  286. {spacr-0.9.24 → spacr-0.9.26}/spacr/measure.py +0 -0
  287. {spacr-0.9.24 → spacr-0.9.26}/spacr/ml.py +0 -0
  288. {spacr-0.9.24 → spacr-0.9.26}/spacr/plot.py +0 -0
  289. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/data/lopit.csv +0 -0
  290. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/data/toxoplasma_metadata.csv +0 -0
  291. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/OFL.txt +0 -0
  292. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/OpenSans-Italic-VariableFont_wdth,wght.ttf +0 -0
  293. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/OpenSans-VariableFont_wdth,wght.ttf +0 -0
  294. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/README.txt +0 -0
  295. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans-Bold.ttf +0 -0
  296. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans-BoldItalic.ttf +0 -0
  297. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans-ExtraBold.ttf +0 -0
  298. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans-ExtraBoldItalic.ttf +0 -0
  299. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans-Italic.ttf +0 -0
  300. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans-Light.ttf +0 -0
  301. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans-LightItalic.ttf +0 -0
  302. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans-Medium.ttf +0 -0
  303. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans-MediumItalic.ttf +0 -0
  304. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans-Regular.ttf +0 -0
  305. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans-SemiBold.ttf +0 -0
  306. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans-SemiBoldItalic.ttf +0 -0
  307. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Bold.ttf +0 -0
  308. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_Condensed-BoldItalic.ttf +0 -0
  309. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_Condensed-ExtraBold.ttf +0 -0
  310. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_Condensed-ExtraBoldItalic.ttf +0 -0
  311. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Italic.ttf +0 -0
  312. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Light.ttf +0 -0
  313. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_Condensed-LightItalic.ttf +0 -0
  314. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Medium.ttf +0 -0
  315. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_Condensed-MediumItalic.ttf +0 -0
  316. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Regular.ttf +0 -0
  317. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_Condensed-SemiBold.ttf +0 -0
  318. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_Condensed-SemiBoldItalic.ttf +0 -0
  319. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Bold.ttf +0 -0
  320. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-BoldItalic.ttf +0 -0
  321. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-ExtraBold.ttf +0 -0
  322. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-ExtraBoldItalic.ttf +0 -0
  323. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Italic.ttf +0 -0
  324. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Light.ttf +0 -0
  325. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-LightItalic.ttf +0 -0
  326. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Medium.ttf +0 -0
  327. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-MediumItalic.ttf +0 -0
  328. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Regular.ttf +0 -0
  329. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-SemiBold.ttf +0 -0
  330. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-SemiBoldItalic.ttf +0 -0
  331. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/abort.png +0 -0
  332. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/annotate.png +0 -0
  333. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/cellpose_all.png +0 -0
  334. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/cellpose_masks.png +0 -0
  335. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/classify.png +0 -0
  336. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/convert.png +0 -0
  337. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/default.png +0 -0
  338. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/download.png +0 -0
  339. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/flow_chart_v3.png +0 -0
  340. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/logo.pdf +0 -0
  341. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/logo_spacr.png +0 -0
  342. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/logo_spacr_1.png +0 -0
  343. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/make_masks.png +0 -0
  344. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/map_barcodes.png +0 -0
  345. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/mask.png +0 -0
  346. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/measure.png +0 -0
  347. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/ml_analyze.png +0 -0
  348. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/plaque.png +0 -0
  349. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/recruitment.png +0 -0
  350. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/regression.png +0 -0
  351. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/run.png +0 -0
  352. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/sequencing.png +0 -0
  353. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/settings.png +0 -0
  354. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/train_cellpose.png +0 -0
  355. {spacr-0.9.24 → spacr-0.9.26}/spacr/resources/icons/umap.png +0 -0
  356. {spacr-0.9.24 → spacr-0.9.26}/spacr/sequencing.py +0 -0
  357. {spacr-0.9.24 → spacr-0.9.26}/spacr/settings.py +0 -0
  358. {spacr-0.9.24 → spacr-0.9.26}/spacr/sim.py +0 -0
  359. {spacr-0.9.24 → spacr-0.9.26}/spacr/sp_stats.py +0 -0
  360. {spacr-0.9.24 → spacr-0.9.26}/spacr/spacr_cellpose.py +0 -0
  361. {spacr-0.9.24 → spacr-0.9.26}/spacr/submodules.py +0 -0
  362. {spacr-0.9.24 → spacr-0.9.26}/spacr/timelapse.py +0 -0
  363. {spacr-0.9.24 → spacr-0.9.26}/spacr/toxo.py +0 -0
  364. {spacr-0.9.24 → spacr-0.9.26}/spacr/utils.py +0 -0
  365. {spacr-0.9.24 → spacr-0.9.26}/spacr/version.py +0 -0
  366. {spacr-0.9.24 → spacr-0.9.26}/spacr.egg-info/SOURCES.txt +0 -0
  367. {spacr-0.9.24 → spacr-0.9.26}/spacr.egg-info/dependency_links.txt +0 -0
  368. {spacr-0.9.24 → spacr-0.9.26}/spacr.egg-info/entry_points.txt +0 -0
  369. {spacr-0.9.24 → spacr-0.9.26}/spacr.egg-info/requires.txt +0 -0
  370. {spacr-0.9.24 → spacr-0.9.26}/spacr.egg-info/top_level.txt +0 -0
{spacr-0.9.24/spacr.egg-info → spacr-0.9.26}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: spacr
3
- Version: 0.9.24
3
+ Version: 0.9.26
4
4
  Summary: Spatial phenotype analysis of crisp screens (SpaCr)
5
5
  Home-page: https://github.com/EinarOlafsson/spacr
6
6
  Author: Einar Birnir Olafsson
@@ -167,7 +167,10 @@ Data Availability
167
167
 
168
168
  - **Raw sequencing data** are available from NCBI BioProject `PRJNA1261935 <https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1261935>`_ and SRA accessions: `SRR33531217 <https://www.ncbi.nlm.nih.gov/sra/SRR33531217>`_, `SRR33531218 <https://www.ncbi.nlm.nih.gov/sra/SRR33531218>`_, `SRR33531219 <https://www.ncbi.nlm.nih.gov/sra/SRR33531219>`_, `SRR33531220 <https://www.ncbi.nlm.nih.gov/sra/SRR33531220>`_
169
169
 
170
- - **Image data** is deposited at EBI BioStudies under accession: `S-BIAD2076 <https://www.ebi.ac.uk/biostudies/studies/S-BIAD2076>`_
170
+ - **Image data** is deposited at EBI BioStudies under accession:
171
+ `S-BIAD2076 <https://www.ebi.ac.uk/biostudies/studies/S-BIAD2076>`_
172
+ *(If the link redirects to the main BioStudies portal, copy and paste it directly into your browser.)*
173
+
171
174
 
172
175
  Example Notebooks
173
176
  -----------------
@@ -200,5 +203,5 @@ See the `LICENSE <https://github.com/EinarOlafsson/spacr/blob/main/LICENSE>`_ fi
200
203
  How to Cite
201
204
  -----------
202
205
  If you use spaCR in your research, please cite:
203
- Einar Olafsson, et al. SpaCr: Spatial phenotype analysis of CRISPR-Cas9 screens. *Manuscript in preparation*.
206
+ Olafsson EB, et al. SpaCr: Spatial phenotype analysis of CRISPR-Cas9 screens. *Manuscript in preparation*.
204
207
 
{spacr-0.9.24 → spacr-0.9.26}/README.rst RENAMED
@@ -85,7 +85,10 @@ Data Availability
85
85
 
86
86
  - **Raw sequencing data** are available from NCBI BioProject `PRJNA1261935 <https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1261935>`_ and SRA accessions: `SRR33531217 <https://www.ncbi.nlm.nih.gov/sra/SRR33531217>`_, `SRR33531218 <https://www.ncbi.nlm.nih.gov/sra/SRR33531218>`_, `SRR33531219 <https://www.ncbi.nlm.nih.gov/sra/SRR33531219>`_, `SRR33531220 <https://www.ncbi.nlm.nih.gov/sra/SRR33531220>`_
87
87
 
88
- - **Image data** is deposited at EBI BioStudies under accession: `S-BIAD2076 <https://www.ebi.ac.uk/biostudies/studies/S-BIAD2076>`_
88
+ - **Image data** is deposited at EBI BioStudies under accession:
89
+ `S-BIAD2076 <https://www.ebi.ac.uk/biostudies/studies/S-BIAD2076>`_
90
+ *(If the link redirects to the main BioStudies portal, copy and paste it directly into your browser.)*
91
+
89
92
 
90
93
  Example Notebooks
91
94
  -----------------
@@ -118,5 +121,5 @@ See the `LICENSE <https://github.com/EinarOlafsson/spacr/blob/main/LICENSE>`_ fi
118
121
  How to Cite
119
122
  -----------
120
123
  If you use spaCR in your research, please cite:
121
- Einar Olafsson, et al. SpaCr: Spatial phenotype analysis of CRISPR-Cas9 screens. *Manuscript in preparation*.
124
+ Olafsson EB, et al. SpaCr: Spatial phenotype analysis of CRISPR-Cas9 screens. *Manuscript in preparation*.
122
125
 
{spacr-0.9.24 → spacr-0.9.26}/setup.py RENAMED
@@ -71,7 +71,7 @@ dependencies = [
71
71
  'huggingface-hub>=0.24.0,<0.25'
72
72
  ]
73
73
 
74
- VERSION = "0.9.24"
74
+ VERSION = "0.9.26"
75
75
 
76
76
  setup(
77
77
  name="spacr",
{spacr-0.9.24 → spacr-0.9.26/spacr.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: spacr
3
- Version: 0.9.24
3
+ Version: 0.9.26
4
4
  Summary: Spatial phenotype analysis of crisp screens (SpaCr)
5
5
  Home-page: https://github.com/EinarOlafsson/spacr
6
6
  Author: Einar Birnir Olafsson
@@ -167,7 +167,10 @@ Data Availability
167
167
 
168
168
  - **Raw sequencing data** are available from NCBI BioProject `PRJNA1261935 <https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1261935>`_ and SRA accessions: `SRR33531217 <https://www.ncbi.nlm.nih.gov/sra/SRR33531217>`_, `SRR33531218 <https://www.ncbi.nlm.nih.gov/sra/SRR33531218>`_, `SRR33531219 <https://www.ncbi.nlm.nih.gov/sra/SRR33531219>`_, `SRR33531220 <https://www.ncbi.nlm.nih.gov/sra/SRR33531220>`_
169
169
 
170
- - **Image data** is deposited at EBI BioStudies under accession: `S-BIAD2076 <https://www.ebi.ac.uk/biostudies/studies/S-BIAD2076>`_
170
+ - **Image data** is deposited at EBI BioStudies under accession:
171
+ `S-BIAD2076 <https://www.ebi.ac.uk/biostudies/studies/S-BIAD2076>`_
172
+ *(If the link redirects to the main BioStudies portal, copy and paste it directly into your browser.)*
173
+
171
174
 
172
175
  Example Notebooks
173
176
  -----------------
@@ -200,5 +203,5 @@ See the `LICENSE <https://github.com/EinarOlafsson/spacr/blob/main/LICENSE>`_ fi
200
203
  How to Cite
201
204
  -----------
202
205
  If you use spaCR in your research, please cite:
203
- Einar Olafsson, et al. SpaCr: Spatial phenotype analysis of CRISPR-Cas9 screens. *Manuscript in preparation*.
206
+ Olafsson EB, et al. SpaCr: Spatial phenotype analysis of CRISPR-Cas9 screens. *Manuscript in preparation*.
204
207
 
{spacr-0.9.24 → spacr-0.9.26}/LICENSE RENAMED
File without changes
{spacr-0.9.24 → spacr-0.9.26}/MANIFEST.in RENAMED
File without changes
{spacr-0.9.24 → spacr-0.9.26}/deploy_docs.sh RENAMED
File without changes
{spacr-0.9.24 → spacr-0.9.26}/docs/_modules/index.html RENAMED
File without changes
{spacr-0.9.24 → spacr-0.9.26}/docs/_modules/main.html RENAMED
File without changes
{spacr-0.9.24 → spacr-0.9.26}/docs/_static/basic.css RENAMED
File without changes
{spacr-0.9.24 → spacr-0.9.26}/docs/_static/doctools.js RENAMED
File without changes
{spacr-0.9.24 → spacr-0.9.26}/docs/_static/file.png RENAMED
File without changes
{spacr-0.9.24 → spacr-0.9.26}/docs/_static/graphviz.css RENAMED
File without changes
{spacr-0.9.24 → spacr-0.9.26}/docs/_static/js/theme.js RENAMED
File without changes
{spacr-0.9.24 → spacr-0.9.26}/docs/_static/minus.png RENAMED
File without changes
{spacr-0.9.24 → spacr-0.9.26}/docs/_static/plus.png RENAMED
File without changes
{spacr-0.9.24 → spacr-0.9.26}/docs/_static/pygments.css RENAMED
File without changes