spacr 0.9.23__tar.gz → 0.9.24__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {spacr-0.9.23 → spacr-0.9.24}/MANIFEST.in +2 -8
- {spacr-0.9.23/spacr.egg-info → spacr-0.9.24}/PKG-INFO +2 -2
- {spacr-0.9.23 → spacr-0.9.24}/README.rst +1 -1
- {spacr-0.9.23 → spacr-0.9.24}/setup.py +1 -1
- {spacr-0.9.23 → spacr-0.9.24}/spacr/gui_core.py +2 -2
- spacr-0.9.24/spacr/resources/icons/flow_chart_v3.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24/spacr.egg-info}/PKG-INFO +2 -2
- {spacr-0.9.23 → spacr-0.9.24}/spacr.egg-info/SOURCES.txt +2 -6
- spacr-0.9.23/spacr/resources/icons/dna_matrix.mp4 +0 -0
- spacr-0.9.23/spacr/resources/icons/flow_chart_v2.png +0 -0
- spacr-0.9.23/spacr/resources/images/plate1_E01_T0001F001L01A01Z01C02.tif +0 -0
- spacr-0.9.23/spacr/resources/images/plate1_E01_T0001F001L01A02Z01C01.tif +0 -0
- spacr-0.9.23/spacr/resources/images/plate1_E01_T0001F001L01A03Z01C03.tif +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/LICENSE +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/deploy_docs.sh +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/.doctrees/environment.pickle +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_images/logo_spacr.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/SetupDict.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/core/BasePredictor.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/core/BaseTrainer.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/core/Baseline/Predictor.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/core/Baseline/Trainer.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/core/Baseline/utils.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/core/MEDIAR/EnsemblePredictor.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/core/MEDIAR/Predictor.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/core/MEDIAR/Trainer.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/core/MEDIAR/utils.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/core/utils.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/evaluate.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/generate_mapping.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/main.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/predict.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/app_annotate.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/app_classify.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/app_make_masks.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/app_mask.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/app_measure.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/app_sequencing.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/app_umap.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/chat_bot.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/core.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/deep_spacr.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/gui.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/gui_core.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/gui_elements.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/gui_utils.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/io.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/logger.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/measure.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/mediar.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/ml.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/plot.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/sequencing.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/settings.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/sim.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/sp_stats.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/spacr_cellpose.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/submodules.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/timelapse.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/toxo.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/utils.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/spacr/version.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/train_tools/data_utils/custom/CellAware.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/train_tools/data_utils/custom/LoadImage.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/train_tools/data_utils/custom/NormalizeImage.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/train_tools/data_utils/datasetter.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/train_tools/data_utils/transforms.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/train_tools/data_utils/utils.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/train_tools/measures.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/train_tools/models/MEDIARFormer.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_modules/train_tools/utils.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/SetupDict/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/core/BasePredictor/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/core/BaseTrainer/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/core/Baseline/Predictor/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/core/Baseline/Trainer/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/core/Baseline/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/core/Baseline/utils/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/core/MEDIAR/EnsemblePredictor/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/core/MEDIAR/Predictor/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/core/MEDIAR/Trainer/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/core/MEDIAR/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/core/MEDIAR/utils/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/core/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/core/utils/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/evaluate/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/generate_mapping/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/main/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/predict/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/app_annotate/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/app_classify/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/app_make_masks/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/app_mask/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/app_measure/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/app_sequencing/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/app_umap/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/chat_bot/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/core/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/deep_spacr/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/gui/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/gui_core/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/gui_elements/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/gui_utils/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/io/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/logger/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/measure/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/mediar/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/ml/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/openai/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/plot/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/sequencing/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/settings/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/sim/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/sp_stats/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/spacr_cellpose/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/submodules/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/timelapse/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/toxo/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/utils/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/spacr/version/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/custom/CellAware/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/custom/LoadImage/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/custom/NormalizeImage/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/custom/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/datasetter/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/transforms/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/utils/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/measures/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/models/MEDIARFormer/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/models/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/utils/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_sources/index.rst.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/basic.css +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/badge_only.css +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/Roboto-Slab-Bold.woff +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/Roboto-Slab-Bold.woff2 +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/Roboto-Slab-Regular.woff +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/Roboto-Slab-Regular.woff2 +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/fontawesome-webfont.eot +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/fontawesome-webfont.svg +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/fontawesome-webfont.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/fontawesome-webfont.woff +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/fontawesome-webfont.woff2 +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/lato-bold-italic.woff +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/lato-bold-italic.woff2 +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/lato-bold.woff +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/lato-bold.woff2 +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/lato-normal-italic.woff +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/lato-normal-italic.woff2 +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/lato-normal.woff +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/fonts/lato-normal.woff2 +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/css/theme.css +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/doctools.js +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/documentation_options.js +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/file.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-bold.eot +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-bold.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-bold.woff +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-bold.woff2 +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-bolditalic.eot +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-bolditalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-bolditalic.woff +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-bolditalic.woff2 +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-italic.eot +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-italic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-italic.woff +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-italic.woff2 +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-regular.eot +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-regular.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-regular.woff +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/Lato/lato-regular.woff2 +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2 +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/graphviz.css +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/js/badge_only.js +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/js/theme.js +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/js/versions.js +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/language_data.js +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/logo_spacr.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/minus.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/plus.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/pygments.css +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/searchtools.js +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/_static/sphinx_highlight.js +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/SetupDict/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/core/BasePredictor/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/core/BaseTrainer/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/core/Baseline/Predictor/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/core/Baseline/Trainer/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/core/Baseline/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/core/Baseline/utils/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/core/MEDIAR/EnsemblePredictor/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/core/MEDIAR/Predictor/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/core/MEDIAR/Trainer/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/core/MEDIAR/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/core/MEDIAR/utils/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/core/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/core/utils/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/evaluate/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/generate_mapping/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/main/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/predict/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/app_annotate/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/app_classify/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/app_make_masks/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/app_mask/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/app_measure/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/app_sequencing/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/app_umap/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/chat_bot/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/core/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/deep_spacr/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/gui/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/gui_core/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/gui_elements/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/gui_utils/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/io/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/logger/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/measure/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/mediar/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/ml/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/openai/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/plot/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/sequencing/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/settings/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/sim/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/sp_stats/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/spacr_cellpose/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/submodules/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/timelapse/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/toxo/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/utils/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/spacr/version/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/train_tools/data_utils/custom/CellAware/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/train_tools/data_utils/custom/LoadImage/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/train_tools/data_utils/custom/NormalizeImage/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/train_tools/data_utils/custom/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/train_tools/data_utils/datasetter/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/train_tools/data_utils/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/train_tools/data_utils/transforms/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/train_tools/data_utils/utils/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/train_tools/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/train_tools/measures/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/train_tools/models/MEDIARFormer/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/train_tools/models/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/api/train_tools/utils/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/genindex.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/index.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/objects.inv +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/py-modindex.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/search.html +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/searchindex.js +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/source/_static/custom.css +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/source/_static/logo_spacr.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/source/conf.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/docs/source/index.rst +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/environment.yaml +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/fonts/OpenSans-Regular.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/requirements.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/rtd_trigger.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/setup.cfg +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/setup_docs.sh +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/__init__.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/__main__.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/app_annotate.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/app_classify.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/app_make_masks.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/app_mask.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/app_measure.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/app_sequencing.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/app_umap.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/chat_bot.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/core.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/deep_spacr.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/gui.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/gui_elements.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/gui_utils.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/io.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/logger.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/measure.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/ml.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/plot.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/data/lopit.csv +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/data/toxoplasma_metadata.csv +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/OFL.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/OpenSans-Italic-VariableFont_wdth,wght.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/OpenSans-VariableFont_wdth,wght.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/README.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans-Bold.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans-BoldItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans-ExtraBold.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans-ExtraBoldItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans-Italic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans-Light.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans-LightItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans-Medium.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans-MediumItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans-Regular.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans-SemiBold.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans-SemiBoldItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Bold.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_Condensed-BoldItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_Condensed-ExtraBold.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_Condensed-ExtraBoldItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Italic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Light.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_Condensed-LightItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Medium.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_Condensed-MediumItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Regular.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_Condensed-SemiBold.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_Condensed-SemiBoldItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Bold.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-BoldItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-ExtraBold.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-ExtraBoldItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Italic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Light.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-LightItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Medium.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-MediumItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Regular.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-SemiBold.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-SemiBoldItalic.ttf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/abort.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/annotate.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/cellpose_all.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/cellpose_masks.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/classify.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/convert.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/default.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/download.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/logo.pdf +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/logo_spacr.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/logo_spacr_1.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/make_masks.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/map_barcodes.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/mask.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/measure.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/ml_analyze.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/plaque.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/recruitment.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/regression.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/run.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/sequencing.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/settings.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/train_cellpose.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/resources/icons/umap.png +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/sequencing.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/settings.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/sim.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/sp_stats.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/spacr_cellpose.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/submodules.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/timelapse.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/toxo.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/utils.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr/version.py +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr.egg-info/dependency_links.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr.egg-info/entry_points.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr.egg-info/requires.txt +0 -0
- {spacr-0.9.23 → spacr-0.9.24}/spacr.egg-info/top_level.txt +0 -0
@@ -1,8 +1,6 @@
|
|
1
1
|
recursive-include spacr/resources/models/cp *
|
2
2
|
recursive-include spacr/resources/icons *
|
3
3
|
recursive-include spacr/resources/font *
|
4
|
-
recursive-include spacr/resources/MEDIAR *
|
5
|
-
recursive-include spacr/resources/MEDIAR_weights *
|
6
4
|
|
7
5
|
# Include essential files
|
8
6
|
include *.py
|
@@ -31,14 +29,10 @@ global-exclude docs-env/
|
|
31
29
|
|
32
30
|
# Exclude model files from distribution
|
33
31
|
exclude spacr/resources/models/cp/*
|
34
|
-
prune
|
35
|
-
prune spacr/
|
32
|
+
prune Notebooks
|
33
|
+
prune spacr/Notebooks
|
36
34
|
prune spacr/datasets
|
37
35
|
|
38
|
-
# Exclude model files from distribution
|
39
|
-
#exclude spacr/resources/models/cp/*
|
40
|
-
#prune spacr/resources/models/cp
|
41
|
-
|
42
36
|
# Exclude all notebooks (including old ones)
|
43
37
|
prune notebooks
|
44
38
|
prune spacr/notebooks
|
@@ -1,6 +1,6 @@
|
|
1
1
|
Metadata-Version: 2.1
|
2
2
|
Name: spacr
|
3
|
-
Version: 0.9.
|
3
|
+
Version: 0.9.24
|
4
4
|
Summary: Spatial phenotype analysis of crisp screens (SpaCr)
|
5
5
|
Home-page: https://github.com/EinarOlafsson/spacr
|
6
6
|
Author: Einar Birnir Olafsson
|
@@ -118,7 +118,7 @@ Features
|
|
118
118
|
- **Sequencing:** Map FASTQ reads to barcode and gRNA barcode metadata.
|
119
119
|
- **Misc:** Analyze Ca oscillation, recruitment, infection rate, plaque size/count.
|
120
120
|
|
121
|
-
.. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/
|
121
|
+
.. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/flow_chart_v3.png
|
122
122
|
:alt: SpaCr workflow
|
123
123
|
:align: center
|
124
124
|
|
@@ -36,7 +36,7 @@ Features
|
|
36
36
|
- **Sequencing:** Map FASTQ reads to barcode and gRNA barcode metadata.
|
37
37
|
- **Misc:** Analyze Ca oscillation, recruitment, infection rate, plaque size/count.
|
38
38
|
|
39
|
-
.. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/
|
39
|
+
.. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/flow_chart_v3.png
|
40
40
|
:alt: SpaCr workflow
|
41
41
|
:align: center
|
42
42
|
|
@@ -361,8 +361,8 @@ def setup_plot_section(vertical_container, settings_type):
|
|
361
361
|
if settings_type == 'map_barcodes':
|
362
362
|
current_dir = os.path.dirname(__file__)
|
363
363
|
resources_path = os.path.join(current_dir, 'resources', 'icons')
|
364
|
-
gif_path = os.path.join(resources_path, 'dna_matrix.mp4')
|
365
|
-
display_media_in_plot_frame(gif_path, plot_frame)
|
364
|
+
#gif_path = os.path.join(resources_path, 'dna_matrix.mp4')
|
365
|
+
#display_media_in_plot_frame(gif_path, plot_frame)
|
366
366
|
|
367
367
|
canvas = FigureCanvasTkAgg(figure, master=plot_frame)
|
368
368
|
canvas.get_tk_widget().configure(cursor='arrow', highlightthickness=0)
|
Binary file
|
@@ -1,6 +1,6 @@
|
|
1
1
|
Metadata-Version: 2.1
|
2
2
|
Name: spacr
|
3
|
-
Version: 0.9.
|
3
|
+
Version: 0.9.24
|
4
4
|
Summary: Spatial phenotype analysis of crisp screens (SpaCr)
|
5
5
|
Home-page: https://github.com/EinarOlafsson/spacr
|
6
6
|
Author: Einar Birnir Olafsson
|
@@ -118,7 +118,7 @@ Features
|
|
118
118
|
- **Sequencing:** Map FASTQ reads to barcode and gRNA barcode metadata.
|
119
119
|
- **Misc:** Analyze Ca oscillation, recruitment, infection rate, plaque size/count.
|
120
120
|
|
121
|
-
.. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/
|
121
|
+
.. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/flow_chart_v3.png
|
122
122
|
:alt: SpaCr workflow
|
123
123
|
:align: center
|
124
124
|
|
@@ -348,9 +348,8 @@ spacr/resources/icons/cellpose_masks.png
|
|
348
348
|
spacr/resources/icons/classify.png
|
349
349
|
spacr/resources/icons/convert.png
|
350
350
|
spacr/resources/icons/default.png
|
351
|
-
spacr/resources/icons/dna_matrix.mp4
|
352
351
|
spacr/resources/icons/download.png
|
353
|
-
spacr/resources/icons/
|
352
|
+
spacr/resources/icons/flow_chart_v3.png
|
354
353
|
spacr/resources/icons/logo.pdf
|
355
354
|
spacr/resources/icons/logo_spacr.png
|
356
355
|
spacr/resources/icons/logo_spacr_1.png
|
@@ -366,7 +365,4 @@ spacr/resources/icons/run.png
|
|
366
365
|
spacr/resources/icons/sequencing.png
|
367
366
|
spacr/resources/icons/settings.png
|
368
367
|
spacr/resources/icons/train_cellpose.png
|
369
|
-
spacr/resources/icons/umap.png
|
370
|
-
spacr/resources/images/plate1_E01_T0001F001L01A01Z01C02.tif
|
371
|
-
spacr/resources/images/plate1_E01_T0001F001L01A02Z01C01.tif
|
372
|
-
spacr/resources/images/plate1_E01_T0001F001L01A03Z01C03.tif
|
368
|
+
spacr/resources/icons/umap.png
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
{spacr-0.9.23 → spacr-0.9.24}/docs/_modules/train_tools/data_utils/custom/NormalizeImage.html
RENAMED
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
{spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/datasetter/index.rst.txt
RENAMED
File without changes
|
File without changes
|
{spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/transforms/index.rst.txt
RENAMED
File without changes
|
File without changes
|
File without changes
|
File without changes
|
{spacr-0.9.23 → spacr-0.9.24}/docs/_sources/api/train_tools/models/MEDIARFormer/index.rst.txt
RENAMED
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|