spacr 0.9.22__tar.gz → 0.9.24__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (375) hide show
  1. {spacr-0.9.22 → spacr-0.9.24}/MANIFEST.in +2 -8
  2. {spacr-0.9.22/spacr.egg-info → spacr-0.9.24}/PKG-INFO +6 -6
  3. {spacr-0.9.22 → spacr-0.9.24}/README.rst +5 -5
  4. {spacr-0.9.22 → spacr-0.9.24}/setup.py +1 -1
  5. {spacr-0.9.22 → spacr-0.9.24}/spacr/gui_core.py +2 -2
  6. spacr-0.9.24/spacr/resources/icons/flow_chart_v3.png +0 -0
  7. {spacr-0.9.22 → spacr-0.9.24/spacr.egg-info}/PKG-INFO +6 -6
  8. {spacr-0.9.22 → spacr-0.9.24}/spacr.egg-info/SOURCES.txt +2 -6
  9. spacr-0.9.22/spacr/resources/icons/dna_matrix.mp4 +0 -0
  10. spacr-0.9.22/spacr/resources/icons/flow_chart_v2.png +0 -0
  11. spacr-0.9.22/spacr/resources/images/plate1_E01_T0001F001L01A01Z01C02.tif +0 -0
  12. spacr-0.9.22/spacr/resources/images/plate1_E01_T0001F001L01A02Z01C01.tif +0 -0
  13. spacr-0.9.22/spacr/resources/images/plate1_E01_T0001F001L01A03Z01C03.tif +0 -0
  14. {spacr-0.9.22 → spacr-0.9.24}/LICENSE +0 -0
  15. {spacr-0.9.22 → spacr-0.9.24}/deploy_docs.sh +0 -0
  16. {spacr-0.9.22 → spacr-0.9.24}/docs/.doctrees/environment.pickle +0 -0
  17. {spacr-0.9.22 → spacr-0.9.24}/docs/_images/logo_spacr.png +0 -0
  18. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/SetupDict.html +0 -0
  19. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/core/BasePredictor.html +0 -0
  20. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/core/BaseTrainer.html +0 -0
  21. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/core/Baseline/Predictor.html +0 -0
  22. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/core/Baseline/Trainer.html +0 -0
  23. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/core/Baseline/utils.html +0 -0
  24. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/core/MEDIAR/EnsemblePredictor.html +0 -0
  25. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/core/MEDIAR/Predictor.html +0 -0
  26. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/core/MEDIAR/Trainer.html +0 -0
  27. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/core/MEDIAR/utils.html +0 -0
  28. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/core/utils.html +0 -0
  29. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/evaluate.html +0 -0
  30. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/generate_mapping.html +0 -0
  31. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/index.html +0 -0
  32. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/main.html +0 -0
  33. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/predict.html +0 -0
  34. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/app_annotate.html +0 -0
  35. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/app_classify.html +0 -0
  36. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/app_make_masks.html +0 -0
  37. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/app_mask.html +0 -0
  38. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/app_measure.html +0 -0
  39. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/app_sequencing.html +0 -0
  40. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/app_umap.html +0 -0
  41. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/chat_bot.html +0 -0
  42. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/core.html +0 -0
  43. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/deep_spacr.html +0 -0
  44. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/gui.html +0 -0
  45. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/gui_core.html +0 -0
  46. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/gui_elements.html +0 -0
  47. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/gui_utils.html +0 -0
  48. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/io.html +0 -0
  49. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/logger.html +0 -0
  50. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/measure.html +0 -0
  51. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/mediar.html +0 -0
  52. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/ml.html +0 -0
  53. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/plot.html +0 -0
  54. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/sequencing.html +0 -0
  55. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/settings.html +0 -0
  56. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/sim.html +0 -0
  57. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/sp_stats.html +0 -0
  58. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/spacr_cellpose.html +0 -0
  59. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/submodules.html +0 -0
  60. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/timelapse.html +0 -0
  61. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/toxo.html +0 -0
  62. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/utils.html +0 -0
  63. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/spacr/version.html +0 -0
  64. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/train_tools/data_utils/custom/CellAware.html +0 -0
  65. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/train_tools/data_utils/custom/LoadImage.html +0 -0
  66. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/train_tools/data_utils/custom/NormalizeImage.html +0 -0
  67. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/train_tools/data_utils/datasetter.html +0 -0
  68. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/train_tools/data_utils/transforms.html +0 -0
  69. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/train_tools/data_utils/utils.html +0 -0
  70. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/train_tools/measures.html +0 -0
  71. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/train_tools/models/MEDIARFormer.html +0 -0
  72. {spacr-0.9.22 → spacr-0.9.24}/docs/_modules/train_tools/utils.html +0 -0
  73. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/SetupDict/index.rst.txt +0 -0
  74. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/core/BasePredictor/index.rst.txt +0 -0
  75. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/core/BaseTrainer/index.rst.txt +0 -0
  76. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/core/Baseline/Predictor/index.rst.txt +0 -0
  77. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/core/Baseline/Trainer/index.rst.txt +0 -0
  78. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/core/Baseline/index.rst.txt +0 -0
  79. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/core/Baseline/utils/index.rst.txt +0 -0
  80. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/core/MEDIAR/EnsemblePredictor/index.rst.txt +0 -0
  81. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/core/MEDIAR/Predictor/index.rst.txt +0 -0
  82. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/core/MEDIAR/Trainer/index.rst.txt +0 -0
  83. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/core/MEDIAR/index.rst.txt +0 -0
  84. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/core/MEDIAR/utils/index.rst.txt +0 -0
  85. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/core/index.rst.txt +0 -0
  86. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/core/utils/index.rst.txt +0 -0
  87. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/evaluate/index.rst.txt +0 -0
  88. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/generate_mapping/index.rst.txt +0 -0
  89. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/index.rst.txt +0 -0
  90. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/main/index.rst.txt +0 -0
  91. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/predict/index.rst.txt +0 -0
  92. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/app_annotate/index.rst.txt +0 -0
  93. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/app_classify/index.rst.txt +0 -0
  94. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/app_make_masks/index.rst.txt +0 -0
  95. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/app_mask/index.rst.txt +0 -0
  96. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/app_measure/index.rst.txt +0 -0
  97. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/app_sequencing/index.rst.txt +0 -0
  98. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/app_umap/index.rst.txt +0 -0
  99. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/chat_bot/index.rst.txt +0 -0
  100. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/core/index.rst.txt +0 -0
  101. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/deep_spacr/index.rst.txt +0 -0
  102. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/gui/index.rst.txt +0 -0
  103. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/gui_core/index.rst.txt +0 -0
  104. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/gui_elements/index.rst.txt +0 -0
  105. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/gui_utils/index.rst.txt +0 -0
  106. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/index.rst.txt +0 -0
  107. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/io/index.rst.txt +0 -0
  108. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/logger/index.rst.txt +0 -0
  109. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/measure/index.rst.txt +0 -0
  110. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/mediar/index.rst.txt +0 -0
  111. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/ml/index.rst.txt +0 -0
  112. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/openai/index.rst.txt +0 -0
  113. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/plot/index.rst.txt +0 -0
  114. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/sequencing/index.rst.txt +0 -0
  115. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/settings/index.rst.txt +0 -0
  116. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/sim/index.rst.txt +0 -0
  117. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/sp_stats/index.rst.txt +0 -0
  118. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/spacr_cellpose/index.rst.txt +0 -0
  119. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/submodules/index.rst.txt +0 -0
  120. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/timelapse/index.rst.txt +0 -0
  121. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/toxo/index.rst.txt +0 -0
  122. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/utils/index.rst.txt +0 -0
  123. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/spacr/version/index.rst.txt +0 -0
  124. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/custom/CellAware/index.rst.txt +0 -0
  125. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/custom/LoadImage/index.rst.txt +0 -0
  126. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/custom/NormalizeImage/index.rst.txt +0 -0
  127. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/custom/index.rst.txt +0 -0
  128. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/datasetter/index.rst.txt +0 -0
  129. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/index.rst.txt +0 -0
  130. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/transforms/index.rst.txt +0 -0
  131. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/train_tools/data_utils/utils/index.rst.txt +0 -0
  132. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/train_tools/index.rst.txt +0 -0
  133. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/train_tools/measures/index.rst.txt +0 -0
  134. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/train_tools/models/MEDIARFormer/index.rst.txt +0 -0
  135. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/train_tools/models/index.rst.txt +0 -0
  136. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/api/train_tools/utils/index.rst.txt +0 -0
  137. {spacr-0.9.22 → spacr-0.9.24}/docs/_sources/index.rst.txt +0 -0
  138. {spacr-0.9.22 → spacr-0.9.24}/docs/_static/basic.css +0 -0
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  365. {spacr-0.9.22 → spacr-0.9.24}/spacr/sp_stats.py +0 -0
  366. {spacr-0.9.22 → spacr-0.9.24}/spacr/spacr_cellpose.py +0 -0
  367. {spacr-0.9.22 → spacr-0.9.24}/spacr/submodules.py +0 -0
  368. {spacr-0.9.22 → spacr-0.9.24}/spacr/timelapse.py +0 -0
  369. {spacr-0.9.22 → spacr-0.9.24}/spacr/toxo.py +0 -0
  370. {spacr-0.9.22 → spacr-0.9.24}/spacr/utils.py +0 -0
  371. {spacr-0.9.22 → spacr-0.9.24}/spacr/version.py +0 -0
  372. {spacr-0.9.22 → spacr-0.9.24}/spacr.egg-info/dependency_links.txt +0 -0
  373. {spacr-0.9.22 → spacr-0.9.24}/spacr.egg-info/entry_points.txt +0 -0
  374. {spacr-0.9.22 → spacr-0.9.24}/spacr.egg-info/requires.txt +0 -0
  375. {spacr-0.9.22 → spacr-0.9.24}/spacr.egg-info/top_level.txt +0 -0
{spacr-0.9.22 → spacr-0.9.24}/MANIFEST.in RENAMED
@@ -1,8 +1,6 @@
1
1
  recursive-include spacr/resources/models/cp *
2
2
  recursive-include spacr/resources/icons *
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  recursive-include spacr/resources/font *
4
- recursive-include spacr/resources/MEDIAR *
5
- recursive-include spacr/resources/MEDIAR_weights *
6
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7
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  # Include essential files
8
6
  include *.py
@@ -31,14 +29,10 @@ global-exclude docs-env/
31
29
 
32
30
  # Exclude model files from distribution
33
31
  exclude spacr/resources/models/cp/*
34
- prune notebooks
35
- prune spacr/notebooks
32
+ prune Notebooks
33
+ prune spacr/Notebooks
36
34
  prune spacr/datasets
37
35
 
38
- # Exclude model files from distribution
39
- #exclude spacr/resources/models/cp/*
40
- #prune spacr/resources/models/cp
41
-
42
36
  # Exclude all notebooks (including old ones)
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  prune notebooks
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  prune spacr/notebooks
{spacr-0.9.22/spacr.egg-info → spacr-0.9.24}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: spacr
3
- Version: 0.9.22
3
+ Version: 0.9.24
4
4
  Summary: Spatial phenotype analysis of crisp screens (SpaCr)
5
5
  Home-page: https://github.com/EinarOlafsson/spacr
6
6
  Author: Einar Birnir Olafsson
@@ -86,8 +86,8 @@ Requires-Dist: opencv-python; extra == "full"
86
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  :target: https://badge.fury.io/py/spacr
87
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  .. |Python version| image:: https://img.shields.io/pypi/pyversions/spacr
88
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  :target: https://pypistats.org/packages/spacr
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- .. |Licence: GPL v3| image:: https://img.shields.io/github/license/EinarOlafsson/spacr
90
- :target: https://github.com/EinarOlafsson/spacr/blob/master/LICENSE
89
+ .. |Licence: MIT| image:: https://img.shields.io/github/license/EinarOlafsson/spacr
90
+ :target: https://github.com/EinarOlafsson/spacr/blob/main/LICENSE
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  .. |repo size| image:: https://img.shields.io/github/repo-size/EinarOlafsson/spacr
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  :target: https://github.com/EinarOlafsson/spacr/
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@@ -95,7 +95,7 @@ Requires-Dist: opencv-python; extra == "full"
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  Badges
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  ------
98
- |Docs| |PyPI version| |Python version| |Licence: GPL v3| |repo size|
98
+ |Docs| |PyPI version| |Python version| |Licence: MIT| |repo size|
99
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100
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  SpaCr
101
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  =====
@@ -118,7 +118,7 @@ Features
118
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  - **Sequencing:** Map FASTQ reads to barcode and gRNA barcode metadata.
119
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  - **Misc:** Analyze Ca oscillation, recruitment, infection rate, plaque size/count.
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121
- .. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/flow_chart_v2.png
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+ .. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/flow_chart_v3.png
122
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  :alt: SpaCr workflow
123
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  :align: center
124
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@@ -194,7 +194,7 @@ The following example Jupyter notebooks illustrate common workflows using spaCR.
194
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195
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  License
196
196
  -------
197
- spaCR is distributed under the terms of the GNU General Public License v3.0.
197
+ spaCR is distributed under the terms of the MIT License.
198
198
  See the `LICENSE <https://github.com/EinarOlafsson/spacr/blob/main/LICENSE>`_ file for details.
199
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200
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  How to Cite
{spacr-0.9.22 → spacr-0.9.24}/README.rst RENAMED
@@ -4,8 +4,8 @@
4
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  :target: https://badge.fury.io/py/spacr
5
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  .. |Python version| image:: https://img.shields.io/pypi/pyversions/spacr
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  :target: https://pypistats.org/packages/spacr
7
- .. |Licence: GPL v3| image:: https://img.shields.io/github/license/EinarOlafsson/spacr
8
- :target: https://github.com/EinarOlafsson/spacr/blob/master/LICENSE
7
+ .. |Licence: MIT| image:: https://img.shields.io/github/license/EinarOlafsson/spacr
8
+ :target: https://github.com/EinarOlafsson/spacr/blob/main/LICENSE
9
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  .. |repo size| image:: https://img.shields.io/github/repo-size/EinarOlafsson/spacr
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  :target: https://github.com/EinarOlafsson/spacr/
11
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@@ -13,7 +13,7 @@
13
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14
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  Badges
15
15
  ------
16
- |Docs| |PyPI version| |Python version| |Licence: GPL v3| |repo size|
16
+ |Docs| |PyPI version| |Python version| |Licence: MIT| |repo size|
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18
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  SpaCr
19
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  =====
@@ -36,7 +36,7 @@ Features
36
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  - **Sequencing:** Map FASTQ reads to barcode and gRNA barcode metadata.
37
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  - **Misc:** Analyze Ca oscillation, recruitment, infection rate, plaque size/count.
38
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39
- .. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/flow_chart_v2.png
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+ .. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/flow_chart_v3.png
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  :alt: SpaCr workflow
41
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  :align: center
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@@ -112,7 +112,7 @@ The following example Jupyter notebooks illustrate common workflows using spaCR.
112
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113
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  License
114
114
  -------
115
- spaCR is distributed under the terms of the GNU General Public License v3.0.
115
+ spaCR is distributed under the terms of the MIT License.
116
116
  See the `LICENSE <https://github.com/EinarOlafsson/spacr/blob/main/LICENSE>`_ file for details.
117
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  How to Cite
{spacr-0.9.22 → spacr-0.9.24}/setup.py RENAMED
@@ -71,7 +71,7 @@ dependencies = [
71
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  'huggingface-hub>=0.24.0,<0.25'
72
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  ]
73
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74
- VERSION = "0.9.22"
74
+ VERSION = "0.9.24"
75
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76
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  setup(
77
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  name="spacr",
{spacr-0.9.22 → spacr-0.9.24}/spacr/gui_core.py RENAMED
@@ -361,8 +361,8 @@ def setup_plot_section(vertical_container, settings_type):
361
361
  if settings_type == 'map_barcodes':
362
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  current_dir = os.path.dirname(__file__)
363
363
  resources_path = os.path.join(current_dir, 'resources', 'icons')
364
- gif_path = os.path.join(resources_path, 'dna_matrix.mp4')
365
- display_media_in_plot_frame(gif_path, plot_frame)
364
+ #gif_path = os.path.join(resources_path, 'dna_matrix.mp4')
365
+ #display_media_in_plot_frame(gif_path, plot_frame)
366
366
 
367
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  canvas = FigureCanvasTkAgg(figure, master=plot_frame)
368
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  canvas.get_tk_widget().configure(cursor='arrow', highlightthickness=0)
{spacr-0.9.22 → spacr-0.9.24/spacr.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: spacr
3
- Version: 0.9.22
3
+ Version: 0.9.24
4
4
  Summary: Spatial phenotype analysis of crisp screens (SpaCr)
5
5
  Home-page: https://github.com/EinarOlafsson/spacr
6
6
  Author: Einar Birnir Olafsson
@@ -86,8 +86,8 @@ Requires-Dist: opencv-python; extra == "full"
86
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  :target: https://badge.fury.io/py/spacr
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  .. |Python version| image:: https://img.shields.io/pypi/pyversions/spacr
88
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  :target: https://pypistats.org/packages/spacr
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- .. |Licence: GPL v3| image:: https://img.shields.io/github/license/EinarOlafsson/spacr
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- :target: https://github.com/EinarOlafsson/spacr/blob/master/LICENSE
89
+ .. |Licence: MIT| image:: https://img.shields.io/github/license/EinarOlafsson/spacr
90
+ :target: https://github.com/EinarOlafsson/spacr/blob/main/LICENSE
91
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  .. |repo size| image:: https://img.shields.io/github/repo-size/EinarOlafsson/spacr
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  :target: https://github.com/EinarOlafsson/spacr/
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@@ -95,7 +95,7 @@ Requires-Dist: opencv-python; extra == "full"
95
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96
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  Badges
97
97
  ------
98
- |Docs| |PyPI version| |Python version| |Licence: GPL v3| |repo size|
98
+ |Docs| |PyPI version| |Python version| |Licence: MIT| |repo size|
99
99
 
100
100
  SpaCr
101
101
  =====
@@ -118,7 +118,7 @@ Features
118
118
  - **Sequencing:** Map FASTQ reads to barcode and gRNA barcode metadata.
119
119
  - **Misc:** Analyze Ca oscillation, recruitment, infection rate, plaque size/count.
120
120
 
121
- .. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/flow_chart_v2.png
121
+ .. image:: https://github.com/EinarOlafsson/spacr/raw/main/spacr/resources/icons/flow_chart_v3.png
122
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  :alt: SpaCr workflow
123
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  :align: center
124
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@@ -194,7 +194,7 @@ The following example Jupyter notebooks illustrate common workflows using spaCR.
194
194
 
195
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  License
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  -------
197
- spaCR is distributed under the terms of the GNU General Public License v3.0.
197
+ spaCR is distributed under the terms of the MIT License.
198
198
  See the `LICENSE <https://github.com/EinarOlafsson/spacr/blob/main/LICENSE>`_ file for details.
199
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200
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  How to Cite
{spacr-0.9.22 → spacr-0.9.24}/spacr.egg-info/SOURCES.txt RENAMED
@@ -348,9 +348,8 @@ spacr/resources/icons/cellpose_masks.png
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  spacr/resources/icons/classify.png
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  spacr/resources/icons/convert.png
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  spacr/resources/icons/default.png
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- spacr/resources/icons/dna_matrix.mp4
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  spacr/resources/icons/download.png
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- spacr/resources/icons/flow_chart_v2.png
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+ spacr/resources/icons/flow_chart_v3.png
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  spacr/resources/icons/logo.pdf
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  spacr/resources/icons/logo_spacr.png
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  spacr/resources/icons/logo_spacr_1.png
@@ -366,7 +365,4 @@ spacr/resources/icons/run.png
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  spacr/resources/icons/sequencing.png
367
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  spacr/resources/icons/settings.png
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  spacr/resources/icons/train_cellpose.png
369
- spacr/resources/icons/umap.png
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- spacr/resources/images/plate1_E01_T0001F001L01A01Z01C02.tif
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- spacr/resources/images/plate1_E01_T0001F001L01A02Z01C01.tif
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- spacr/resources/images/plate1_E01_T0001F001L01A03Z01C03.tif
368
+ spacr/resources/icons/umap.png
{spacr-0.9.22 → spacr-0.9.24}/LICENSE RENAMED
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{spacr-0.9.22 → spacr-0.9.24}/deploy_docs.sh RENAMED
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{spacr-0.9.22 → spacr-0.9.24}/docs/_modules/index.html RENAMED
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{spacr-0.9.22 → spacr-0.9.24}/docs/_modules/main.html RENAMED
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{spacr-0.9.22 → spacr-0.9.24}/docs/_static/basic.css RENAMED
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{spacr-0.9.22 → spacr-0.9.24}/docs/_static/doctools.js RENAMED
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{spacr-0.9.22 → spacr-0.9.24}/docs/_static/file.png RENAMED
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