PyPI - spacr - Versions diffs - 0.5.0__tar.gz → 0.9.1__tar.gz - Mend

spacr 0.5.0tar.gz → 0.9.1tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (428) hide show

{spacr-0.5.0/spacr.egg-info → spacr-0.9.1}/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: spacr
-Version: 0.5.0
+Version: 0.9.1
 Summary: Spatial phenotype analysis of crisp screens (SpaCr)
 Home-page: https://github.com/EinarOlafsson/spacr
 Author: Einar Birnir Olafsson

{spacr-0.5.0 → spacr-0.9.1}/docs/.doctrees/environment.pickle RENAMED Viewed

Binary file

{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/SetupDict.html RENAMED Viewed

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-  <title>SetupDict &mdash; spacr 0.4.60 documentation</title>
+  <title>SetupDict &mdash; spacr 0.5.0 documentation</title>
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+      <script src="../_static/documentation_options.js?v=1dd76d02"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/core/BasePredictor.html RENAMED Viewed

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-  <title>core.BasePredictor &mdash; spacr 0.4.60 documentation</title>
+  <title>core.BasePredictor &mdash; spacr 0.5.0 documentation</title>
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+      <script src="../../_static/documentation_options.js?v=1dd76d02"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/core/BaseTrainer.html RENAMED Viewed

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-  <title>core.BaseTrainer &mdash; spacr 0.4.60 documentation</title>
+  <title>core.BaseTrainer &mdash; spacr 0.5.0 documentation</title>
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+      <script src="../../_static/documentation_options.js?v=1dd76d02"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/core/Baseline/Predictor.html RENAMED Viewed

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-  <title>core.Baseline.Predictor &mdash; spacr 0.4.60 documentation</title>
+  <title>core.Baseline.Predictor &mdash; spacr 0.5.0 documentation</title>
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+      <script src="../../../_static/documentation_options.js?v=1dd76d02"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/core/Baseline/Trainer.html RENAMED Viewed

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-  <title>core.Baseline.Trainer &mdash; spacr 0.4.60 documentation</title>
+  <title>core.Baseline.Trainer &mdash; spacr 0.5.0 documentation</title>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/core/Baseline/utils.html RENAMED Viewed

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-  <title>core.Baseline.utils &mdash; spacr 0.4.60 documentation</title>
+  <title>core.Baseline.utils &mdash; spacr 0.5.0 documentation</title>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/core/MEDIAR/EnsemblePredictor.html RENAMED Viewed

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-  <title>core.MEDIAR.EnsemblePredictor &mdash; spacr 0.4.60 documentation</title>
+  <title>core.MEDIAR.EnsemblePredictor &mdash; spacr 0.5.0 documentation</title>
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+      <script src="../../../_static/documentation_options.js?v=1dd76d02"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/core/MEDIAR/Predictor.html RENAMED Viewed

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   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>core.MEDIAR.Predictor &mdash; spacr 0.4.60 documentation</title>
+  <title>core.MEDIAR.Predictor &mdash; spacr 0.5.0 documentation</title>
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-      <script src="../../../_static/documentation_options.js?v=063a25df"></script>
+      <script src="../../../_static/documentation_options.js?v=1dd76d02"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/core/MEDIAR/Trainer.html RENAMED Viewed

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   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>core.MEDIAR.Trainer &mdash; spacr 0.4.60 documentation</title>
+  <title>core.MEDIAR.Trainer &mdash; spacr 0.5.0 documentation</title>
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-      <script src="../../../_static/documentation_options.js?v=063a25df"></script>
+      <script src="../../../_static/documentation_options.js?v=1dd76d02"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/core/MEDIAR/utils.html RENAMED Viewed

@@ -5,14 +5,14 @@
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   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>core.MEDIAR.utils &mdash; spacr 0.4.60 documentation</title>
+  <title>core.MEDIAR.utils &mdash; spacr 0.5.0 documentation</title>
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       <link rel="stylesheet" type="text/css" href="../../../_static/custom.css" />
-      <script src="../../../_static/documentation_options.js?v=063a25df"></script>
+      <script src="../../../_static/documentation_options.js?v=1dd76d02"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/core/utils.html RENAMED Viewed

@@ -5,14 +5,14 @@
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   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>core.utils &mdash; spacr 0.4.60 documentation</title>
+  <title>core.utils &mdash; spacr 0.5.0 documentation</title>
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+      <script src="../../_static/documentation_options.js?v=1dd76d02"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/evaluate.html RENAMED Viewed

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-  <title>evaluate &mdash; spacr 0.4.60 documentation</title>
+  <title>evaluate &mdash; spacr 0.5.0 documentation</title>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/generate_mapping.html RENAMED Viewed

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-  <title>generate_mapping &mdash; spacr 0.4.60 documentation</title>
+  <title>generate_mapping &mdash; spacr 0.5.0 documentation</title>
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+      <script src="../_static/documentation_options.js?v=1dd76d02"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/index.html RENAMED Viewed

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-  <title>Overview: module code &mdash; spacr 0.4.60 documentation</title>
+  <title>Overview: module code &mdash; spacr 0.5.0 documentation</title>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/main.html RENAMED Viewed

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+  <title>main &mdash; spacr 0.5.0 documentation</title>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/predict.html RENAMED Viewed

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+  <title>predict &mdash; spacr 0.5.0 documentation</title>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/spacr/app_annotate.html RENAMED Viewed

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+  <title>spacr.app_annotate &mdash; spacr 0.5.0 documentation</title>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/spacr/app_classify.html RENAMED Viewed

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+  <title>spacr.app_classify &mdash; spacr 0.5.0 documentation</title>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/spacr/app_make_masks.html RENAMED Viewed

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-  <title>spacr.app_make_masks &mdash; spacr 0.4.60 documentation</title>
+  <title>spacr.app_make_masks &mdash; spacr 0.5.0 documentation</title>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/spacr/app_mask.html RENAMED Viewed

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-  <title>spacr.app_mask &mdash; spacr 0.4.60 documentation</title>
+  <title>spacr.app_mask &mdash; spacr 0.5.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
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       <link rel="stylesheet" type="text/css" href="../../_static/custom.css" />
-      <script src="../../_static/documentation_options.js?v=063a25df"></script>
+      <script src="../../_static/documentation_options.js?v=1dd76d02"></script>
       <script src="../../_static/doctools.js?v=9a2dae69"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/spacr/app_measure.html RENAMED Viewed

@@ -5,14 +5,14 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.app_measure &mdash; spacr 0.4.60 documentation</title>
+  <title>spacr.app_measure &mdash; spacr 0.5.0 documentation</title>
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       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
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       <link rel="stylesheet" type="text/css" href="../../_static/custom.css" />
-      <script src="../../_static/documentation_options.js?v=063a25df"></script>
+      <script src="../../_static/documentation_options.js?v=1dd76d02"></script>
       <script src="../../_static/doctools.js?v=9a2dae69"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/spacr/app_sequencing.html RENAMED Viewed

@@ -5,14 +5,14 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.app_sequencing &mdash; spacr 0.4.60 documentation</title>
+  <title>spacr.app_sequencing &mdash; spacr 0.5.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
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       <link rel="stylesheet" type="text/css" href="../../_static/custom.css" />
-      <script src="../../_static/documentation_options.js?v=063a25df"></script>
+      <script src="../../_static/documentation_options.js?v=1dd76d02"></script>
       <script src="../../_static/doctools.js?v=9a2dae69"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/spacr/app_umap.html RENAMED Viewed

@@ -5,14 +5,14 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.app_umap &mdash; spacr 0.4.60 documentation</title>
+  <title>spacr.app_umap &mdash; spacr 0.5.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
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       <link rel="stylesheet" type="text/css" href="../../_static/custom.css" />
-      <script src="../../_static/documentation_options.js?v=063a25df"></script>
+      <script src="../../_static/documentation_options.js?v=1dd76d02"></script>
       <script src="../../_static/doctools.js?v=9a2dae69"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/spacr/chat_bot.html RENAMED Viewed

@@ -5,14 +5,14 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.chat_bot &mdash; spacr 0.4.60 documentation</title>
+  <title>spacr.chat_bot &mdash; spacr 0.5.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
       <link rel="stylesheet" type="text/css" href="../../_static/graphviz.css?v=fd3f3429" />
       <link rel="stylesheet" type="text/css" href="../../_static/custom.css" />
-      <script src="../../_static/documentation_options.js?v=063a25df"></script>
+      <script src="../../_static/documentation_options.js?v=1dd76d02"></script>
       <script src="../../_static/doctools.js?v=9a2dae69"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/spacr/core.html RENAMED Viewed

@@ -5,14 +5,14 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.core &mdash; spacr 0.4.60 documentation</title>
+  <title>spacr.core &mdash; spacr 0.5.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
       <link rel="stylesheet" type="text/css" href="../../_static/graphviz.css?v=fd3f3429" />
       <link rel="stylesheet" type="text/css" href="../../_static/custom.css" />
-      <script src="../../_static/documentation_options.js?v=063a25df"></script>
+      <script src="../../_static/documentation_options.js?v=1dd76d02"></script>
       <script src="../../_static/doctools.js?v=9a2dae69"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
@@ -347,7 +347,6 @@
                 <span class="k">if</span> <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;plot&#39;</span><span class="p">]:</span>
                     <span class="k">if</span> <span class="ow">not</span> <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;timelapse&#39;</span><span class="p">]:</span>
                         <span class="k">if</span> <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;test_mode&#39;</span><span class="p">]</span> <span class="o">==</span> <span class="kc">True</span><span class="p">:</span>
                             <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;examples_to_plot&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">src</span><span class="p">,</span><span class="s1">&#39;merged&#39;</span><span class="p">))</span>

{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/spacr/deep_spacr.html RENAMED Viewed

@@ -5,14 +5,14 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.deep_spacr &mdash; spacr 0.4.60 documentation</title>
+  <title>spacr.deep_spacr &mdash; spacr 0.5.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
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       <link rel="stylesheet" type="text/css" href="../../_static/custom.css" />
-      <script src="../../_static/documentation_options.js?v=063a25df"></script>
+      <script src="../../_static/documentation_options.js?v=1dd76d02"></script>
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       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/spacr/gui.html RENAMED Viewed

@@ -5,14 +5,14 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.gui &mdash; spacr 0.4.60 documentation</title>
+  <title>spacr.gui &mdash; spacr 0.5.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
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       <link rel="stylesheet" type="text/css" href="../../_static/custom.css" />
-      <script src="../../_static/documentation_options.js?v=063a25df"></script>
+      <script src="../../_static/documentation_options.js?v=1dd76d02"></script>
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@@ -242,7 +242,6 @@
 <div class="viewcode-block" id="MainApp.additional_gui_apps">
 <a class="viewcode-back" href="../../api/spacr/gui/index.html#spacr.gui.MainApp.additional_gui_apps">[docs]</a>
         <span class="bp">self</span><span class="o">.</span><span class="n">additional_gui_apps</span> <span class="o">=</span> <span class="p">{</span>
-            <span class="s2">&quot;Convert&quot;</span><span class="p">:</span> <span class="p">(</span><span class="k">lambda</span> <span class="n">frame</span><span class="p">:</span> <span class="n">initiate_root</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;convert&#39;</span><span class="p">),</span> <span class="s2">&quot;Convert images to Grayscale TIFs.&quot;</span><span class="p">),</span>
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             <span class="s2">&quot;Train Cellpose&quot;</span><span class="p">:</span> <span class="p">(</span><span class="k">lambda</span> <span class="n">frame</span><span class="p">:</span> <span class="n">initiate_root</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;train_cellpose&#39;</span><span class="p">),</span> <span class="s2">&quot;Train custom Cellpose models.&quot;</span><span class="p">),</span>
             <span class="s2">&quot;ML Analyze&quot;</span><span class="p">:</span> <span class="p">(</span><span class="k">lambda</span> <span class="n">frame</span><span class="p">:</span> <span class="n">initiate_root</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="s1">&#39;ml_analyze&#39;</span><span class="p">),</span> <span class="s2">&quot;Machine learning analysis of data.&quot;</span><span class="p">),</span>

{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/spacr/gui_core.html RENAMED Viewed

@@ -5,14 +5,14 @@
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   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.gui_core &mdash; spacr 0.4.60 documentation</title>
+  <title>spacr.gui_core &mdash; spacr 0.5.0 documentation</title>
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       <link rel="stylesheet" type="text/css" href="../../_static/custom.css" />
-      <script src="../../_static/documentation_options.js?v=063a25df"></script>
+      <script src="../../_static/documentation_options.js?v=1dd76d02"></script>
       <script src="../../_static/doctools.js?v=9a2dae69"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
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{spacr-0.5.0 → spacr-0.9.1}/docs/_modules/spacr/gui_elements.html RENAMED Viewed

@@ -5,14 +5,14 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.gui_elements &mdash; spacr 0.4.60 documentation</title>
+  <title>spacr.gui_elements &mdash; spacr 0.5.0 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
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       <link rel="stylesheet" type="text/css" href="../../_static/custom.css" />
-      <script src="../../_static/documentation_options.js?v=063a25df"></script>
+      <script src="../../_static/documentation_options.js?v=1dd76d02"></script>
       <script src="../../_static/doctools.js?v=9a2dae69"></script>
       <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>

spacr 0.5.0__tar.gz → 0.9.1__tar.gz

spacr 0.5.0tar.gz → 0.9.1tar.gz