PyPI - spacr - Versions diffs - 0.3.72__tar.gz → 0.3.81__tar.gz - Mend

spacr 0.3.72tar.gz → 0.3.81tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (349) hide show

{spacr-0.3.72/spacr.egg-info → spacr-0.3.81}/PKG-INFO RENAMED Viewed

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: spacr
-Version: 0.3.72
+Version: 0.3.81
 Summary: Spatial phenotype analysis of crisp screens (SpaCr)
 Home-page: https://github.com/EinarOlafsson/spacr
 Author: Einar Birnir Olafsson

spacr-0.3.81/docs/source/_build/doctrees/environment.pickle ADDED Viewed

Binary file

{spacr-0.3.72 → spacr-0.3.81}/docs/source/_build/html/_modules/index.html RENAMED Viewed

@@ -1,22 +1,21 @@
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Overview: module code &mdash; spacr 0.2.65 documentation</title>
+  <title>Overview: module code &mdash; spacr Models already downloaded to: /home/carruthers/anaconda3/envs/spacr/lib/python3.9/site-packages/spacr/resources/models
+0.3.80 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=e59714d7" />
-  <!--[if lt IE 9]>
-    <script src="../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-        <script src="../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../_static/documentation_options.js?v=30a7333d"></script>
-        <script src="../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../_static/documentation_options.js?v=8ad38ec3"></script>
+      <script src="../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
@@ -33,9 +32,6 @@
           <a href="../index.html" class="icon icon-home">
             spacr
           </a>
-              <div class="version">
-                0.2.65
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -80,9 +76,10 @@
 <li><a href="spacr/app_measure.html">spacr.app_measure</a></li>
 <li><a href="spacr/app_sequencing.html">spacr.app_sequencing</a></li>
 <li><a href="spacr/app_umap.html">spacr.app_umap</a></li>
+<li><a href="spacr/cellpose.html">spacr.cellpose</a></li>
+<li><a href="spacr/chat_bot.html">spacr.chat_bot</a></li>
 <li><a href="spacr/core.html">spacr.core</a></li>
 <li><a href="spacr/deep_spacr.html">spacr.deep_spacr</a></li>
-<li><a href="spacr/graph_learning.html">spacr.graph_learning</a></li>
 <li><a href="spacr/gui.html">spacr.gui</a></li>
 <li><a href="spacr/gui_core.html">spacr.gui_core</a></li>
 <li><a href="spacr/gui_elements.html">spacr.gui_elements</a></li>
@@ -90,11 +87,16 @@
 <li><a href="spacr/io.html">spacr.io</a></li>
 <li><a href="spacr/logger.html">spacr.logger</a></li>
 <li><a href="spacr/measure.html">spacr.measure</a></li>
+<li><a href="spacr/mediar.html">spacr.mediar</a></li>
+<li><a href="spacr/ml.html">spacr.ml</a></li>
 <li><a href="spacr/plot.html">spacr.plot</a></li>
 <li><a href="spacr/sequencing.html">spacr.sequencing</a></li>
 <li><a href="spacr/settings.html">spacr.settings</a></li>
 <li><a href="spacr/sim.html">spacr.sim</a></li>
+<li><a href="spacr/stats.html">spacr.stats</a></li>
+<li><a href="spacr/submodules.html">spacr.submodules</a></li>
 <li><a href="spacr/timelapse.html">spacr.timelapse</a></li>
+<li><a href="spacr/toxo.html">spacr.toxo</a></li>
 <li><a href="spacr/utils.html">spacr.utils</a></li>
 </ul>

{spacr-0.3.72 → spacr-0.3.81}/docs/source/_build/html/_modules/spacr/app_annotate.html RENAMED Viewed

@@ -1,22 +1,21 @@
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.app_annotate &mdash; spacr 0.2.65 documentation</title>
+  <title>spacr.app_annotate &mdash; spacr Models already downloaded to: /home/carruthers/anaconda3/envs/spacr/lib/python3.9/site-packages/spacr/resources/models
+0.3.80 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-        <script src="../../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=30a7333d"></script>
-        <script src="../../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=8ad38ec3"></script>
+      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -33,9 +32,6 @@
           <a href="../../index.html" class="icon icon-home">
             spacr
           </a>
-              <div class="version">
-                0.2.65
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
@@ -79,10 +75,22 @@
 <span class="kn">from</span> <span class="nn">.gui</span> <span class="kn">import</span> <span class="n">MainApp</span>
 <span class="kn">from</span> <span class="nn">.gui_elements</span> <span class="kn">import</span> <span class="n">set_dark_style</span><span class="p">,</span> <span class="n">spacrButton</span>
+<div class="viewcode-block" id="convert_to_number">
+<a class="viewcode-back" href="../../spacr.html#spacr.app_annotate.convert_to_number">[docs]</a>
+<span class="k">def</span> <span class="nf">convert_to_number</span><span class="p">(</span><span class="n">value</span><span class="p">):</span>
+    <span class="k">try</span><span class="p">:</span>
+        <span class="k">return</span> <span class="nb">int</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+    <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+        <span class="k">try</span><span class="p">:</span>
+            <span class="k">return</span> <span class="nb">float</span><span class="p">(</span><span class="n">value</span><span class="p">)</span>
+        <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+            <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Unable to convert &#39;</span><span class="si">{</span><span class="n">value</span><span class="si">}</span><span class="s2">&#39; to an integer or float.&quot;</span><span class="p">)</span></div>
 <div class="viewcode-block" id="initiate_annotation_app">
 <a class="viewcode-back" href="../../spacr.html#spacr.app_annotate.initiate_annotation_app">[docs]</a>
 <span class="k">def</span> <span class="nf">initiate_annotation_app</span><span class="p">(</span><span class="n">parent_frame</span><span class="p">):</span>
-    <span class="kn">from</span> <span class="nn">.gui_utils</span> <span class="kn">import</span> <span class="n">generate_annotate_fields</span><span class="p">,</span> <span class="n">annotate_app</span>
+    <span class="kn">from</span> <span class="nn">.gui_utils</span> <span class="kn">import</span> <span class="n">generate_annotate_fields</span><span class="p">,</span> <span class="n">annotate_app</span><span class="p">,</span> <span class="n">convert_to_number</span>
     <span class="c1"># Set up the settings window</span>
     <span class="n">settings_window</span> <span class="o">=</span> <span class="n">tk</span><span class="o">.</span><span class="n">Toplevel</span><span class="p">(</span><span class="n">parent_frame</span><span class="p">)</span>
     <span class="n">settings_window</span><span class="o">.</span><span class="n">title</span><span class="p">(</span><span class="s2">&quot;Annotation Settings&quot;</span><span class="p">)</span>
@@ -96,9 +104,9 @@
         <span class="n">settings</span> <span class="o">=</span> <span class="p">{</span><span class="n">key</span><span class="p">:</span> <span class="n">data</span><span class="p">[</span><span class="s1">&#39;entry&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">get</span><span class="p">()</span> <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">data</span> <span class="ow">in</span> <span class="n">vars_dict</span><span class="o">.</span><span class="n">items</span><span class="p">()}</span>
         <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;channels&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;channels&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
         <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;img_size&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;img_size&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)))</span>  <span class="c1"># Convert string to list of integers</span>
-        <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;percentiles&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;percentiles&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)))</span>  <span class="c1"># Convert string to list of integers</span>
+        <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;percentiles&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="n">convert_to_number</span><span class="p">,</span> <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;percentiles&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)))</span> <span class="k">if</span> <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;percentiles&#39;</span><span class="p">]</span> <span class="k">else</span> <span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="mi">98</span><span class="p">]</span>
         <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;normalize&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;normalize&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">==</span> <span class="s1">&#39;true&#39;</span>
+        <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;normalize_channels&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;normalize_channels&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span>
         <span class="k">try</span><span class="p">:</span>
             <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;measurement&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;measurement&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">&#39;,&#39;</span><span class="p">)</span> <span class="k">if</span> <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;measurement&#39;</span><span class="p">]</span> <span class="k">else</span> <span class="kc">None</span>
             <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;threshold&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span> <span class="k">if</span> <span class="n">settings</span><span class="p">[</span><span class="s1">&#39;threshold&#39;</span><span class="p">]</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">==</span> <span class="s1">&#39;none&#39;</span> <span class="k">else</span> <span class="nb">int</span><span class="p">(</span><span class="n">settings</span><span class="p">[</span><span class="s1">&#39;threshold&#39;</span><span class="p">])</span>
@@ -116,7 +124,6 @@
                 <span class="n">settings</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
         <span class="n">settings_window</span><span class="o">.</span><span class="n">destroy</span><span class="p">()</span>
         <span class="n">annotate_app</span><span class="p">(</span><span class="n">parent_frame</span><span class="p">,</span> <span class="n">settings</span><span class="p">)</span>
     <span class="n">start_button</span> <span class="o">=</span> <span class="n">spacrButton</span><span class="p">(</span><span class="n">settings_window</span><span class="p">,</span> <span class="n">text</span><span class="o">=</span><span class="s2">&quot;annotate&quot;</span><span class="p">,</span> <span class="n">command</span><span class="o">=</span><span class="n">start_annotation_app</span><span class="p">,</span> <span class="n">show_text</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>

{spacr-0.3.72 → spacr-0.3.81}/docs/source/_build/html/_modules/spacr/app_classify.html RENAMED Viewed

@@ -1,22 +1,21 @@
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.app_classify &mdash; spacr 0.2.65 documentation</title>
+  <title>spacr.app_classify &mdash; spacr Models already downloaded to: /home/carruthers/anaconda3/envs/spacr/lib/python3.9/site-packages/spacr/resources/models
+0.3.80 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-        <script src="../../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=30a7333d"></script>
-        <script src="../../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=8ad38ec3"></script>
+      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -33,9 +32,6 @@
           <a href="../../index.html" class="icon icon-home">
             spacr
           </a>
-              <div class="version">
-                0.2.65
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />

{spacr-0.3.72 → spacr-0.3.81}/docs/source/_build/html/_modules/spacr/app_make_masks.html RENAMED Viewed

@@ -1,22 +1,21 @@
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.app_make_masks &mdash; spacr 0.2.65 documentation</title>
+  <title>spacr.app_make_masks &mdash; spacr Models already downloaded to: /home/carruthers/anaconda3/envs/spacr/lib/python3.9/site-packages/spacr/resources/models
+0.3.80 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-        <script src="../../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=30a7333d"></script>
-        <script src="../../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=8ad38ec3"></script>
+      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -33,9 +32,6 @@
           <a href="../../index.html" class="icon icon-home">
             spacr
           </a>
-              <div class="version">
-                0.2.65
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />

{spacr-0.3.72 → spacr-0.3.81}/docs/source/_build/html/_modules/spacr/app_mask.html RENAMED Viewed

@@ -1,22 +1,21 @@
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.app_mask &mdash; spacr 0.2.65 documentation</title>
+  <title>spacr.app_mask &mdash; spacr Models already downloaded to: /home/carruthers/anaconda3/envs/spacr/lib/python3.9/site-packages/spacr/resources/models
+0.3.80 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-        <script src="../../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=30a7333d"></script>
-        <script src="../../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=8ad38ec3"></script>
+      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -33,9 +32,6 @@
           <a href="../../index.html" class="icon icon-home">
             spacr
           </a>
-              <div class="version">
-                0.2.65
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />

{spacr-0.3.72 → spacr-0.3.81}/docs/source/_build/html/_modules/spacr/app_measure.html RENAMED Viewed

@@ -1,22 +1,21 @@
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.app_measure &mdash; spacr 0.2.65 documentation</title>
+  <title>spacr.app_measure &mdash; spacr Models already downloaded to: /home/carruthers/anaconda3/envs/spacr/lib/python3.9/site-packages/spacr/resources/models
+0.3.80 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-        <script src="../../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=30a7333d"></script>
-        <script src="../../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=8ad38ec3"></script>
+      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -33,9 +32,6 @@
           <a href="../../index.html" class="icon icon-home">
             spacr
           </a>
-              <div class="version">
-                0.2.65
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />

{spacr-0.3.72 → spacr-0.3.81}/docs/source/_build/html/_modules/spacr/app_sequencing.html RENAMED Viewed

@@ -1,22 +1,21 @@
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.app_sequencing &mdash; spacr 0.2.65 documentation</title>
+  <title>spacr.app_sequencing &mdash; spacr Models already downloaded to: /home/carruthers/anaconda3/envs/spacr/lib/python3.9/site-packages/spacr/resources/models
+0.3.80 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-        <script src="../../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=30a7333d"></script>
-        <script src="../../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=8ad38ec3"></script>
+      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -33,9 +32,6 @@
           <a href="../../index.html" class="icon icon-home">
             spacr
           </a>
-              <div class="version">
-                0.2.65
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />

{spacr-0.3.72 → spacr-0.3.81}/docs/source/_build/html/_modules/spacr/app_umap.html RENAMED Viewed

@@ -1,22 +1,21 @@
 <!DOCTYPE html>
 <html class="writer-html5" lang="en" data-content_root="../../">
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>spacr.app_umap &mdash; spacr 0.2.65 documentation</title>
+  <title>spacr.app_umap &mdash; spacr Models already downloaded to: /home/carruthers/anaconda3/envs/spacr/lib/python3.9/site-packages/spacr/resources/models
+0.3.80 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
-      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
+      <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=e59714d7" />
-  <!--[if lt IE 9]>
-    <script src="../../_static/js/html5shiv.min.js"></script>
-  <![endif]-->
-        <script src="../../_static/jquery.js?v=5d32c60e"></script>
-        <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=30a7333d"></script>
-        <script src="../../_static/doctools.js?v=9a2dae69"></script>
-        <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
+      <script src="../../_static/jquery.js?v=5d32c60e"></script>
+      <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
+      <script src="../../_static/documentation_options.js?v=8ad38ec3"></script>
+      <script src="../../_static/doctools.js?v=9a2dae69"></script>
+      <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/js/theme.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
@@ -33,9 +32,6 @@
           <a href="../../index.html" class="icon icon-home">
             spacr
           </a>
-              <div class="version">
-                0.2.65
-              </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../../search.html" method="get">
     <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />

spacr 0.3.72__tar.gz → 0.3.81__tar.gz

spacr 0.3.72tar.gz → 0.3.81tar.gz