spacr 0.2.56__tar.gz → 0.2.65__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (122) hide show
  1. {spacr-0.2.56/spacr.egg-info → spacr-0.2.65}/PKG-INFO +1 -1
  2. {spacr-0.2.56 → spacr-0.2.65}/setup.py +1 -1
  3. {spacr-0.2.56 → spacr-0.2.65}/spacr/__init__.py +1 -3
  4. {spacr-0.2.56 → spacr-0.2.65}/spacr/core.py +135 -472
  5. {spacr-0.2.56 → spacr-0.2.65}/spacr/deep_spacr.py +189 -270
  6. {spacr-0.2.56 → spacr-0.2.65}/spacr/gui_core.py +294 -86
  7. {spacr-0.2.56 → spacr-0.2.65}/spacr/gui_elements.py +335 -82
  8. {spacr-0.2.56 → spacr-0.2.65}/spacr/gui_utils.py +100 -49
  9. {spacr-0.2.56 → spacr-0.2.65}/spacr/io.py +104 -41
  10. {spacr-0.2.56 → spacr-0.2.65}/spacr/plot.py +51 -5
  11. {spacr-0.2.56 → spacr-0.2.65}/spacr/sequencing.py +4 -8
  12. {spacr-0.2.56 → spacr-0.2.65}/spacr/settings.py +27 -31
  13. {spacr-0.2.56 → spacr-0.2.65}/spacr/utils.py +15 -14
  14. {spacr-0.2.56 → spacr-0.2.65/spacr.egg-info}/PKG-INFO +1 -1
  15. {spacr-0.2.56 → spacr-0.2.65}/spacr.egg-info/SOURCES.txt +0 -1
  16. spacr-0.2.56/spacr/chris.py +0 -50
  17. {spacr-0.2.56 → spacr-0.2.65}/LICENSE +0 -0
  18. {spacr-0.2.56 → spacr-0.2.65}/MANIFEST.in +0 -0
  19. {spacr-0.2.56 → spacr-0.2.65}/README.rst +0 -0
  20. {spacr-0.2.56 → spacr-0.2.65}/setup.cfg +0 -0
  21. {spacr-0.2.56 → spacr-0.2.65}/spacr/__main__.py +0 -0
  22. {spacr-0.2.56 → spacr-0.2.65}/spacr/app_annotate.py +0 -0
  23. {spacr-0.2.56 → spacr-0.2.65}/spacr/app_classify.py +0 -0
  24. {spacr-0.2.56 → spacr-0.2.65}/spacr/app_make_masks.py +0 -0
  25. {spacr-0.2.56 → spacr-0.2.65}/spacr/app_mask.py +0 -0
  26. {spacr-0.2.56 → spacr-0.2.65}/spacr/app_measure.py +0 -0
  27. {spacr-0.2.56 → spacr-0.2.65}/spacr/app_sequencing.py +0 -0
  28. {spacr-0.2.56 → spacr-0.2.65}/spacr/app_umap.py +0 -0
  29. {spacr-0.2.56 → spacr-0.2.65}/spacr/graph_learning.py +0 -0
  30. {spacr-0.2.56 → spacr-0.2.65}/spacr/gui.py +0 -0
  31. {spacr-0.2.56 → spacr-0.2.65}/spacr/logger.py +0 -0
  32. {spacr-0.2.56 → spacr-0.2.65}/spacr/measure.py +0 -0
  33. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/OFL.txt +0 -0
  34. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/OpenSans-Italic-VariableFont_wdth,wght.ttf +0 -0
  35. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/OpenSans-VariableFont_wdth,wght.ttf +0 -0
  36. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/README.txt +0 -0
  37. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans-Bold.ttf +0 -0
  38. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans-BoldItalic.ttf +0 -0
  39. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans-ExtraBold.ttf +0 -0
  40. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans-ExtraBoldItalic.ttf +0 -0
  41. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans-Italic.ttf +0 -0
  42. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans-Light.ttf +0 -0
  43. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans-LightItalic.ttf +0 -0
  44. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans-Medium.ttf +0 -0
  45. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans-MediumItalic.ttf +0 -0
  46. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans-Regular.ttf +0 -0
  47. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans-SemiBold.ttf +0 -0
  48. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans-SemiBoldItalic.ttf +0 -0
  49. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Bold.ttf +0 -0
  50. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_Condensed-BoldItalic.ttf +0 -0
  51. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_Condensed-ExtraBold.ttf +0 -0
  52. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_Condensed-ExtraBoldItalic.ttf +0 -0
  53. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Italic.ttf +0 -0
  54. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Light.ttf +0 -0
  55. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_Condensed-LightItalic.ttf +0 -0
  56. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Medium.ttf +0 -0
  57. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_Condensed-MediumItalic.ttf +0 -0
  58. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_Condensed-Regular.ttf +0 -0
  59. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_Condensed-SemiBold.ttf +0 -0
  60. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_Condensed-SemiBoldItalic.ttf +0 -0
  61. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Bold.ttf +0 -0
  62. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-BoldItalic.ttf +0 -0
  63. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-ExtraBold.ttf +0 -0
  64. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-ExtraBoldItalic.ttf +0 -0
  65. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Italic.ttf +0 -0
  66. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Light.ttf +0 -0
  67. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-LightItalic.ttf +0 -0
  68. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Medium.ttf +0 -0
  69. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-MediumItalic.ttf +0 -0
  70. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-Regular.ttf +0 -0
  71. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-SemiBold.ttf +0 -0
  72. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/font/open_sans/static/OpenSans_SemiCondensed-SemiBoldItalic.ttf +0 -0
  73. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/abort.png +0 -0
  74. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/annotate.png +0 -0
  75. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/cellpose_all.png +0 -0
  76. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/cellpose_masks.png +0 -0
  77. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/classify.png +0 -0
  78. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/default.png +0 -0
  79. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/download.png +0 -0
  80. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/logo.pdf +0 -0
  81. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/logo_spacr.png +0 -0
  82. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/logo_spacr_1.png +0 -0
  83. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/make_masks.png +0 -0
  84. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/map_barcodes.png +0 -0
  85. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/mask.png +0 -0
  86. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/measure.png +0 -0
  87. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/ml_analyze.png +0 -0
  88. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/recruitment.png +0 -0
  89. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/regression.png +0 -0
  90. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/run.png +0 -0
  91. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/sequencing.png +0 -0
  92. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/settings.png +0 -0
  93. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/spacr_logo_rotation.gif +0 -0
  94. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/train_cellpose.png +0 -0
  95. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/icons/umap.png +0 -0
  96. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model +0 -0
  97. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model_settings.csv +0 -0
  98. {spacr-0.2.56 → spacr-0.2.65}/spacr/resources/models/cp/toxo_pv_lumen.CP_model +0 -0
  99. {spacr-0.2.56 → spacr-0.2.65}/spacr/sim.py +0 -0
  100. {spacr-0.2.56 → spacr-0.2.65}/spacr/sim_app.py +0 -0
  101. {spacr-0.2.56 → spacr-0.2.65}/spacr/timelapse.py +0 -0
  102. {spacr-0.2.56 → spacr-0.2.65}/spacr/version.py +0 -0
  103. {spacr-0.2.56 → spacr-0.2.65}/spacr.egg-info/dependency_links.txt +0 -0
  104. {spacr-0.2.56 → spacr-0.2.65}/spacr.egg-info/entry_points.txt +0 -0
  105. {spacr-0.2.56 → spacr-0.2.65}/spacr.egg-info/requires.txt +0 -0
  106. {spacr-0.2.56 → spacr-0.2.65}/spacr.egg-info/top_level.txt +0 -0
  107. {spacr-0.2.56 → spacr-0.2.65}/tests/test_annotate_app.py +0 -0
  108. {spacr-0.2.56 → spacr-0.2.65}/tests/test_core.py +0 -0
  109. {spacr-0.2.56 → spacr-0.2.65}/tests/test_gui_classify_app.py +0 -0
  110. {spacr-0.2.56 → spacr-0.2.65}/tests/test_gui_mask_app.py +0 -0
  111. {spacr-0.2.56 → spacr-0.2.65}/tests/test_gui_measure_app.py +0 -0
  112. {spacr-0.2.56 → spacr-0.2.65}/tests/test_gui_sim_app.py +0 -0
  113. {spacr-0.2.56 → spacr-0.2.65}/tests/test_gui_utils.py +0 -0
  114. {spacr-0.2.56 → spacr-0.2.65}/tests/test_io.py +0 -0
  115. {spacr-0.2.56 → spacr-0.2.65}/tests/test_mask_app.py +0 -0
  116. {spacr-0.2.56 → spacr-0.2.65}/tests/test_measure.py +0 -0
  117. {spacr-0.2.56 → spacr-0.2.65}/tests/test_plot.py +0 -0
  118. {spacr-0.2.56 → spacr-0.2.65}/tests/test_sim.py +0 -0
  119. {spacr-0.2.56 → spacr-0.2.65}/tests/test_timelapse.py +0 -0
  120. {spacr-0.2.56 → spacr-0.2.65}/tests/test_train.py +0 -0
  121. {spacr-0.2.56 → spacr-0.2.65}/tests/test_umap.py +0 -0
  122. {spacr-0.2.56 → spacr-0.2.65}/tests/test_utils.py +0 -0
{spacr-0.2.56/spacr.egg-info → spacr-0.2.65}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: spacr
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- Version: 0.2.56
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+ Version: 0.2.65
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  Summary: Spatial phenotype analysis of crisp screens (SpaCr)
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  Home-page: https://github.com/EinarOlafsson/spacr
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  Author: Einar Birnir Olafsson
{spacr-0.2.56 → spacr-0.2.65}/setup.py RENAMED
@@ -56,7 +56,7 @@ dependencies = [
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  setup(
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  name="spacr",
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- version="0.2.56",
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+ version="0.2.65",
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  author="Einar Birnir Olafsson",
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  author_email="olafsson@med.umich.com",
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  description="Spatial phenotype analysis of crisp screens (SpaCr)",
{spacr-0.2.56 → spacr-0.2.65}/spacr/__init__.py RENAMED
@@ -17,7 +17,6 @@ from . import gui_utils
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  from . import gui_elements
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  from . import gui_core
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  from . import gui
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- from . import gui
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  from . import app_make_masks
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  from . import app_mask
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  from . import app_measure
@@ -35,7 +34,7 @@ __all__ = [
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  "plot",
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  "measure",
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  "sim",
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- "sequencing"
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+ "sequencing",
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  "timelapse",
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  "deep_spacr",
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  "app_annotate",
@@ -43,7 +42,6 @@ __all__ = [
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  "gui_elements",
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  "gui_core",
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  "gui",
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- "gui",
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  "app_make_masks",
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  "app_mask",
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  "app_measure",