spacr 0.2.2__tar.gz → 0.2.21__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {spacr-0.2.2/spacr.egg-info → spacr-0.2.21}/PKG-INFO +1 -1
- {spacr-0.2.2 → spacr-0.2.21}/setup.py +1 -1
- {spacr-0.2.2 → spacr-0.2.21}/spacr/gui.py +2 -1
- {spacr-0.2.2 → spacr-0.2.21}/spacr/gui_elements.py +1 -5
- spacr-0.2.21/spacr/resources/icons/abort.png +0 -0
- spacr-0.2.21/spacr/resources/icons/cellpose_masks.png +0 -0
- spacr-0.2.21/spacr/resources/icons/classify.png +0 -0
- spacr-0.2.21/spacr/resources/icons/make_masks.png +0 -0
- spacr-0.2.21/spacr/resources/icons/mask.png +0 -0
- spacr-0.2.21/spacr/resources/icons/measure.png +0 -0
- spacr-0.2.21/spacr/resources/icons/recruitment.png +0 -0
- spacr-0.2.21/spacr/resources/icons/regression.png +0 -0
- spacr-0.2.21/spacr/resources/icons/run.png +0 -0
- spacr-0.2.21/spacr/resources/icons/umap.png +0 -0
- {spacr-0.2.2 → spacr-0.2.21/spacr.egg-info}/PKG-INFO +1 -1
- {spacr-0.2.2 → spacr-0.2.21}/spacr.egg-info/SOURCES.txt +2 -0
- spacr-0.2.2/spacr/resources/icons/abort.png +0 -0
- spacr-0.2.2/spacr/resources/icons/classify.png +0 -0
- spacr-0.2.2/spacr/resources/icons/make_masks.png +0 -0
- spacr-0.2.2/spacr/resources/icons/mask.png +0 -0
- spacr-0.2.2/spacr/resources/icons/measure.png +0 -0
- spacr-0.2.2/spacr/resources/icons/regression.png +0 -0
- spacr-0.2.2/spacr/resources/icons/run.png +0 -0
- spacr-0.2.2/spacr/resources/icons/umap.png +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/LICENSE +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/MANIFEST.in +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/README.rst +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/setup.cfg +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/__init__.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/__main__.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/app_annotate.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/app_classify.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/app_make_masks.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/app_mask.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/app_measure.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/app_sequencing.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/app_umap.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/chris.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/core.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/deep_spacr.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/graph_learning.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/gui_core.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/gui_utils.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/io.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/logger.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/measure.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/plot.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/resources/icons/annotate.png +0 -0
- /spacr-0.2.2/spacr/resources/icons/cellpose_masks.png → /spacr-0.2.21/spacr/resources/icons/cellpose_all.png +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/resources/icons/default.png +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/resources/icons/download.png +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/resources/icons/logo_spacr.png +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/resources/icons/map_barcodes.png +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/resources/icons/sequencing.png +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/resources/icons/settings.png +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/resources/icons/train_cellpose.png +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/resources/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/resources/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model_settings.csv +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/resources/models/cp/toxo_pv_lumen.CP_model +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/sequencing.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/settings.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/sim.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/sim_app.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/timelapse.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/utils.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr/version.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr.egg-info/dependency_links.txt +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr.egg-info/entry_points.txt +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr.egg-info/requires.txt +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/spacr.egg-info/top_level.txt +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_annotate_app.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_core.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_gui_classify_app.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_gui_mask_app.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_gui_measure_app.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_gui_sim_app.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_gui_utils.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_io.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_mask_app.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_measure.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_plot.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_sim.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_timelapse.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_train.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_umap.py +0 -0
- {spacr-0.2.2 → spacr-0.2.21}/tests/test_utils.py +0 -0
@@ -97,7 +97,7 @@ class MainApp(tk.Tk):
|
|
97
97
|
# Load the logo image and place it in the main apps row
|
98
98
|
logo_button = spacrButton(main_buttons_frame, text="SpaCr", command=lambda: self.load_app("logo_spacr", initiate_root), icon_name="logo_spacr", size=100, show_text=False)
|
99
99
|
logo_button.grid(row=0, column=0, padx=5, pady=5)
|
100
|
-
self.main_buttons[logo_button] = "SpaCr
|
100
|
+
self.main_buttons[logo_button] = "SpaCr provides a flexible toolset to extract single-cell images and measurements from high-content cell painting experiments, train deep-learning models to classify cellular/subcellular phenotypes, simulate, and analyze pooled CRISPR-Cas9 imaging screens.."
|
101
101
|
|
102
102
|
# Create icon buttons for the main apps
|
103
103
|
for i, (app_name, app_data) in enumerate(self.main_gui_apps.items()):
|
@@ -115,6 +115,7 @@ class MainApp(tk.Tk):
|
|
115
115
|
|
116
116
|
# Update description initially
|
117
117
|
self.update_description()
|
118
|
+
#
|
118
119
|
|
119
120
|
def update_description(self):
|
120
121
|
# Check all buttons and update description if any has the active color
|
@@ -18,11 +18,6 @@ from tkinter import ttk, scrolledtext
|
|
18
18
|
import platform
|
19
19
|
|
20
20
|
def set_dark_style(style, parent_frame=None, containers=None, widgets=None, font_family="Arial", font_size=12, bg_color='black', fg_color='white', active_color='blue', inactive_color='dark_gray'):
|
21
|
-
|
22
|
-
if platform.system() == 'Darwin':
|
23
|
-
bg_color = '#313131'
|
24
|
-
else:
|
25
|
-
bg_color = '#000000'
|
26
21
|
|
27
22
|
if active_color == 'teal':
|
28
23
|
active_color = '#008080'
|
@@ -35,6 +30,7 @@ def set_dark_style(style, parent_frame=None, containers=None, widgets=None, font
|
|
35
30
|
if active_color == 'blue':
|
36
31
|
active_color = '#007BFF'
|
37
32
|
|
33
|
+
style.theme_use('clam')
|
38
34
|
font_style = tkFont.Font(family=font_family, size=font_size)
|
39
35
|
style.configure('TEntry', padding='5 5 5 5', borderwidth=1, relief='solid', fieldbackground=bg_color, foreground=fg_color, font=font_style)
|
40
36
|
style.configure('TCombobox', fieldbackground=bg_color, background=bg_color, foreground=fg_color, selectbackground=bg_color, selectforeground=fg_color, font=font_style)
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
@@ -38,6 +38,7 @@ spacr.egg-info/requires.txt
|
|
38
38
|
spacr.egg-info/top_level.txt
|
39
39
|
spacr/resources/icons/abort.png
|
40
40
|
spacr/resources/icons/annotate.png
|
41
|
+
spacr/resources/icons/cellpose_all.png
|
41
42
|
spacr/resources/icons/cellpose_masks.png
|
42
43
|
spacr/resources/icons/classify.png
|
43
44
|
spacr/resources/icons/default.png
|
@@ -47,6 +48,7 @@ spacr/resources/icons/make_masks.png
|
|
47
48
|
spacr/resources/icons/map_barcodes.png
|
48
49
|
spacr/resources/icons/mask.png
|
49
50
|
spacr/resources/icons/measure.png
|
51
|
+
spacr/resources/icons/recruitment.png
|
50
52
|
spacr/resources/icons/regression.png
|
51
53
|
spacr/resources/icons/run.png
|
52
54
|
spacr/resources/icons/sequencing.png
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
Binary file
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
{spacr-0.2.2 → spacr-0.2.21}/spacr/resources/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model
RENAMED
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|