spacr 0.1.62__tar.gz → 0.1.64__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (61) hide show
  1. {spacr-0.1.62/spacr.egg-info → spacr-0.1.64}/PKG-INFO +1 -1
  2. {spacr-0.1.62 → spacr-0.1.64}/setup.py +1 -1
  3. {spacr-0.1.62 → spacr-0.1.64}/spacr/measure.py +2 -1
  4. {spacr-0.1.62 → spacr-0.1.64}/spacr/settings.py +2 -0
  5. {spacr-0.1.62 → spacr-0.1.64/spacr.egg-info}/PKG-INFO +1 -1
  6. {spacr-0.1.62 → spacr-0.1.64}/LICENSE +0 -0
  7. {spacr-0.1.62 → spacr-0.1.64}/MANIFEST.in +0 -0
  8. {spacr-0.1.62 → spacr-0.1.64}/README.rst +0 -0
  9. {spacr-0.1.62 → spacr-0.1.64}/setup.cfg +0 -0
  10. {spacr-0.1.62 → spacr-0.1.64}/spacr/__init__.py +0 -0
  11. {spacr-0.1.62 → spacr-0.1.64}/spacr/__main__.py +0 -0
  12. {spacr-0.1.62 → spacr-0.1.64}/spacr/app_annotate.py +0 -0
  13. {spacr-0.1.62 → spacr-0.1.64}/spacr/app_classify.py +0 -0
  14. {spacr-0.1.62 → spacr-0.1.64}/spacr/app_make_masks.py +0 -0
  15. {spacr-0.1.62 → spacr-0.1.64}/spacr/app_mask.py +0 -0
  16. {spacr-0.1.62 → spacr-0.1.64}/spacr/app_measure.py +0 -0
  17. {spacr-0.1.62 → spacr-0.1.64}/spacr/app_sequencing.py +0 -0
  18. {spacr-0.1.62 → spacr-0.1.64}/spacr/app_umap.py +0 -0
  19. {spacr-0.1.62 → spacr-0.1.64}/spacr/chris.py +0 -0
  20. {spacr-0.1.62 → spacr-0.1.64}/spacr/core.py +0 -0
  21. {spacr-0.1.62 → spacr-0.1.64}/spacr/deep_spacr.py +0 -0
  22. {spacr-0.1.62 → spacr-0.1.64}/spacr/graph_learning.py +0 -0
  23. {spacr-0.1.62 → spacr-0.1.64}/spacr/gui.py +0 -0
  24. {spacr-0.1.62 → spacr-0.1.64}/spacr/gui_core.py +0 -0
  25. {spacr-0.1.62 → spacr-0.1.64}/spacr/gui_elements.py +0 -0
  26. {spacr-0.1.62 → spacr-0.1.64}/spacr/gui_run.py +0 -0
  27. {spacr-0.1.62 → spacr-0.1.64}/spacr/gui_utils.py +0 -0
  28. {spacr-0.1.62 → spacr-0.1.64}/spacr/gui_wrappers.py +0 -0
  29. {spacr-0.1.62 → spacr-0.1.64}/spacr/io.py +0 -0
  30. {spacr-0.1.62 → spacr-0.1.64}/spacr/logger.py +0 -0
  31. {spacr-0.1.62 → spacr-0.1.64}/spacr/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model +0 -0
  32. {spacr-0.1.62 → spacr-0.1.64}/spacr/models/cp/toxo_plaque_cyto_e25000_X1120_Y1120.CP_model_settings.csv +0 -0
  33. {spacr-0.1.62 → spacr-0.1.64}/spacr/models/cp/toxo_pv_lumen.CP_model +0 -0
  34. {spacr-0.1.62 → spacr-0.1.64}/spacr/plot.py +0 -0
  35. {spacr-0.1.62 → spacr-0.1.64}/spacr/sequencing.py +0 -0
  36. {spacr-0.1.62 → spacr-0.1.64}/spacr/sim.py +0 -0
  37. {spacr-0.1.62 → spacr-0.1.64}/spacr/sim_app.py +0 -0
  38. {spacr-0.1.62 → spacr-0.1.64}/spacr/timelapse.py +0 -0
  39. {spacr-0.1.62 → spacr-0.1.64}/spacr/utils.py +0 -0
  40. {spacr-0.1.62 → spacr-0.1.64}/spacr/version.py +0 -0
  41. {spacr-0.1.62 → spacr-0.1.64}/spacr.egg-info/SOURCES.txt +0 -0
  42. {spacr-0.1.62 → spacr-0.1.64}/spacr.egg-info/dependency_links.txt +0 -0
  43. {spacr-0.1.62 → spacr-0.1.64}/spacr.egg-info/entry_points.txt +0 -0
  44. {spacr-0.1.62 → spacr-0.1.64}/spacr.egg-info/requires.txt +0 -0
  45. {spacr-0.1.62 → spacr-0.1.64}/spacr.egg-info/top_level.txt +0 -0
  46. {spacr-0.1.62 → spacr-0.1.64}/tests/test_annotate_app.py +0 -0
  47. {spacr-0.1.62 → spacr-0.1.64}/tests/test_core.py +0 -0
  48. {spacr-0.1.62 → spacr-0.1.64}/tests/test_gui_classify_app.py +0 -0
  49. {spacr-0.1.62 → spacr-0.1.64}/tests/test_gui_mask_app.py +0 -0
  50. {spacr-0.1.62 → spacr-0.1.64}/tests/test_gui_measure_app.py +0 -0
  51. {spacr-0.1.62 → spacr-0.1.64}/tests/test_gui_sim_app.py +0 -0
  52. {spacr-0.1.62 → spacr-0.1.64}/tests/test_gui_utils.py +0 -0
  53. {spacr-0.1.62 → spacr-0.1.64}/tests/test_io.py +0 -0
  54. {spacr-0.1.62 → spacr-0.1.64}/tests/test_mask_app.py +0 -0
  55. {spacr-0.1.62 → spacr-0.1.64}/tests/test_measure.py +0 -0
  56. {spacr-0.1.62 → spacr-0.1.64}/tests/test_plot.py +0 -0
  57. {spacr-0.1.62 → spacr-0.1.64}/tests/test_sim.py +0 -0
  58. {spacr-0.1.62 → spacr-0.1.64}/tests/test_timelapse.py +0 -0
  59. {spacr-0.1.62 → spacr-0.1.64}/tests/test_train.py +0 -0
  60. {spacr-0.1.62 → spacr-0.1.64}/tests/test_umap.py +0 -0
  61. {spacr-0.1.62 → spacr-0.1.64}/tests/test_utils.py +0 -0
{spacr-0.1.62/spacr.egg-info → spacr-0.1.64}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.1
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  Name: spacr
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- Version: 0.1.62
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+ Version: 0.1.64
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  Summary: Spatial phenotype analysis of crisp screens (SpaCr)
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  Home-page: https://github.com/EinarOlafsson/spacr
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  Author: Einar Birnir Olafsson
{spacr-0.1.62 → spacr-0.1.64}/setup.py RENAMED
@@ -50,7 +50,7 @@ dependencies = [
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  setup(
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  name="spacr",
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- version="0.1.62",
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+ version="0.1.64",
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  author="Einar Birnir Olafsson",
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  author_email="olafsson@med.umich.com",
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  description="Spatial phenotype analysis of crisp screens (SpaCr)",
{spacr-0.1.62 → spacr-0.1.64}/spacr/measure.py RENAMED
@@ -625,7 +625,8 @@ def _measure_crop_core(index, time_ls, file, settings):
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  data_type_before = data_type
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  data = data.astype(np.uint16)
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  data_type = data.dtype
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- print(f'Converted data from {data_type_before} to {data_type}')
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+ if settings['verbose']:
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+ print(f'Converted data from {data_type_before} to {data_type}')
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  if settings['save_measurements']:
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  os.makedirs(source_folder+'/measurements', exist_ok=True)
{spacr-0.1.62 → spacr-0.1.64}/spacr/settings.py RENAMED
@@ -219,6 +219,7 @@ def set_default_umap_image_settings(settings={}):
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  def get_measure_crop_settings(settings):
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  settings.setdefault('src', 'path')
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+ settings.setdefault('verbose', False)
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  # Test mode
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  settings.setdefault('test_mode', False)
@@ -282,6 +283,7 @@ def get_measure_crop_settings(settings):
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  settings.setdefault('um_per_pixel', 0.1)
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  if settings['test_mode']:
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+ settings['verbose'] = True
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  settings['plot'] = True
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  settings['plot_filtration'] = True
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  test_imgs = settings['test_nr']
{spacr-0.1.62 → spacr-0.1.64/spacr.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: spacr
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- Version: 0.1.62
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+ Version: 0.1.64
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  Summary: Spatial phenotype analysis of crisp screens (SpaCr)
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  Home-page: https://github.com/EinarOlafsson/spacr
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  Author: Einar Birnir Olafsson
{spacr-0.1.62 → spacr-0.1.64}/LICENSE RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/MANIFEST.in RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/README.rst RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/setup.cfg RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/__init__.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/__main__.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/app_annotate.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/app_classify.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/app_make_masks.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/app_mask.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/app_measure.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/app_sequencing.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/app_umap.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/chris.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/core.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/deep_spacr.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/graph_learning.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/gui.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/gui_core.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/gui_elements.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/gui_run.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/gui_utils.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/gui_wrappers.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/io.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/logger.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/plot.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/sequencing.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/sim.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/sim_app.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/timelapse.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/utils.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/spacr/version.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/tests/test_core.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/tests/test_gui_sim_app.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/tests/test_gui_utils.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/tests/test_io.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/tests/test_mask_app.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/tests/test_measure.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/tests/test_plot.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/tests/test_sim.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/tests/test_timelapse.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/tests/test_train.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/tests/test_umap.py RENAMED
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{spacr-0.1.62 → spacr-0.1.64}/tests/test_utils.py RENAMED
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