spacr 0.0.80__tar.gz → 0.0.81__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (53) hide show
  1. {spacr-0.0.80/spacr.egg-info → spacr-0.0.81}/PKG-INFO +2 -1
  2. {spacr-0.0.80 → spacr-0.0.81}/setup.py +3 -2
  3. {spacr-0.0.80 → spacr-0.0.81}/spacr/sequencing.py +2 -2
  4. {spacr-0.0.80 → spacr-0.0.81/spacr.egg-info}/PKG-INFO +2 -1
  5. {spacr-0.0.80 → spacr-0.0.81}/spacr.egg-info/requires.txt +1 -0
  6. {spacr-0.0.80 → spacr-0.0.81}/LICENSE +0 -0
  7. {spacr-0.0.80 → spacr-0.0.81}/MANIFEST.in +0 -0
  8. {spacr-0.0.80 → spacr-0.0.81}/README.rst +0 -0
  9. {spacr-0.0.80 → spacr-0.0.81}/setup.cfg +0 -0
  10. {spacr-0.0.80 → spacr-0.0.81}/spacr/__init__.py +0 -0
  11. {spacr-0.0.80 → spacr-0.0.81}/spacr/__main__.py +0 -0
  12. {spacr-0.0.80 → spacr-0.0.81}/spacr/annotate_app.py +0 -0
  13. {spacr-0.0.80 → spacr-0.0.81}/spacr/chris.py +0 -0
  14. {spacr-0.0.80 → spacr-0.0.81}/spacr/core.py +0 -0
  15. {spacr-0.0.80 → spacr-0.0.81}/spacr/deep_spacr.py +0 -0
  16. {spacr-0.0.80 → spacr-0.0.81}/spacr/graph_learning.py +0 -0
  17. {spacr-0.0.80 → spacr-0.0.81}/spacr/gui.py +0 -0
  18. {spacr-0.0.80 → spacr-0.0.81}/spacr/gui_2.py +0 -0
  19. {spacr-0.0.80 → spacr-0.0.81}/spacr/gui_classify_app.py +0 -0
  20. {spacr-0.0.80 → spacr-0.0.81}/spacr/gui_mask_app.py +0 -0
  21. {spacr-0.0.80 → spacr-0.0.81}/spacr/gui_measure_app.py +0 -0
  22. {spacr-0.0.80 → spacr-0.0.81}/spacr/gui_sim_app.py +0 -0
  23. {spacr-0.0.80 → spacr-0.0.81}/spacr/gui_utils.py +0 -0
  24. {spacr-0.0.80 → spacr-0.0.81}/spacr/io.py +0 -0
  25. {spacr-0.0.80 → spacr-0.0.81}/spacr/logger.py +0 -0
  26. {spacr-0.0.80 → spacr-0.0.81}/spacr/mask_app.py +0 -0
  27. {spacr-0.0.80 → spacr-0.0.81}/spacr/measure.py +0 -0
  28. {spacr-0.0.80 → spacr-0.0.81}/spacr/models/cp/toxo_pv_lumen.CP_model +0 -0
  29. {spacr-0.0.80 → spacr-0.0.81}/spacr/plot.py +0 -0
  30. {spacr-0.0.80 → spacr-0.0.81}/spacr/sim.py +0 -0
  31. {spacr-0.0.80 → spacr-0.0.81}/spacr/timelapse.py +0 -0
  32. {spacr-0.0.80 → spacr-0.0.81}/spacr/utils.py +0 -0
  33. {spacr-0.0.80 → spacr-0.0.81}/spacr/version.py +0 -0
  34. {spacr-0.0.80 → spacr-0.0.81}/spacr.egg-info/SOURCES.txt +0 -0
  35. {spacr-0.0.80 → spacr-0.0.81}/spacr.egg-info/dependency_links.txt +0 -0
  36. {spacr-0.0.80 → spacr-0.0.81}/spacr.egg-info/entry_points.txt +0 -0
  37. {spacr-0.0.80 → spacr-0.0.81}/spacr.egg-info/top_level.txt +0 -0
  38. {spacr-0.0.80 → spacr-0.0.81}/tests/test_annotate_app.py +0 -0
  39. {spacr-0.0.80 → spacr-0.0.81}/tests/test_core.py +0 -0
  40. {spacr-0.0.80 → spacr-0.0.81}/tests/test_gui_classify_app.py +0 -0
  41. {spacr-0.0.80 → spacr-0.0.81}/tests/test_gui_mask_app.py +0 -0
  42. {spacr-0.0.80 → spacr-0.0.81}/tests/test_gui_measure_app.py +0 -0
  43. {spacr-0.0.80 → spacr-0.0.81}/tests/test_gui_sim_app.py +0 -0
  44. {spacr-0.0.80 → spacr-0.0.81}/tests/test_gui_utils.py +0 -0
  45. {spacr-0.0.80 → spacr-0.0.81}/tests/test_io.py +0 -0
  46. {spacr-0.0.80 → spacr-0.0.81}/tests/test_mask_app.py +0 -0
  47. {spacr-0.0.80 → spacr-0.0.81}/tests/test_measure.py +0 -0
  48. {spacr-0.0.80 → spacr-0.0.81}/tests/test_plot.py +0 -0
  49. {spacr-0.0.80 → spacr-0.0.81}/tests/test_sim.py +0 -0
  50. {spacr-0.0.80 → spacr-0.0.81}/tests/test_timelapse.py +0 -0
  51. {spacr-0.0.80 → spacr-0.0.81}/tests/test_train.py +0 -0
  52. {spacr-0.0.80 → spacr-0.0.81}/tests/test_umap.py +0 -0
  53. {spacr-0.0.80 → spacr-0.0.81}/tests/test_utils.py +0 -0
{spacr-0.0.80/spacr.egg-info → spacr-0.0.81}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: spacr
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- Version: 0.0.80
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+ Version: 0.0.81
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  Summary: Spatial phenotype analysis of crisp screens (SpaCr)
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  Home-page: https://github.com/EinarOlafsson/spacr
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  Author: Einar Birnir Olafsson
@@ -38,6 +38,7 @@ Requires-Dist: PyWavelets<2.0,>=1.6.0
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  Requires-Dist: torchcam<1.0,>=0.4.0
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  Requires-Dist: ttf_opensans>=2020.10.30
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  Requires-Dist: customtkinter<6.0,>=5.2.2
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+ Requires-Dist: biopython<2.0,>=1.80
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  Requires-Dist: lxml<6.0,>=5.1.0
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  Provides-Extra: dev
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  Requires-Dist: pytest>=3.9; extra == "dev"
{spacr-0.0.80 → spacr-0.0.81}/setup.py RENAMED
@@ -50,13 +50,14 @@ dependencies = [
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  'PyWavelets>=1.6.0,<2.0',
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  'torchcam>=0.4.0,<1.0',
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  'ttf_opensans>=2020.10.30',
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- 'customtkinter>=5.2.2,<6.0',
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+ 'customtkinter>=5.2.2,<6.0',
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+ 'biopython>=1.80,<2.0',
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  'lxml>=5.1.0,<6.0'
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  ]
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  setup(
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  name="spacr",
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- version="0.0.80",
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+ version="0.0.81",
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  author="Einar Birnir Olafsson",
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  author_email="olafsson@med.umich.com",
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  description="Spatial phenotype analysis of crisp screens (SpaCr)",
{spacr-0.0.80 → spacr-0.0.81}/spacr/sequencing.py RENAMED
@@ -342,8 +342,8 @@ def map_barcodes(h5_file_path, settings={}):
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  return df
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- settings.setdefault('grna', '/home/carruthers/Documents/grna_barecodes.csv')
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- settings.setdefault('barcodes', '/home/carruthers/Documents/SCREEN_BARECODES.csv')
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+ settings.setdefault('grna', '/home/carruthers/Documents/grna_barcodes.csv')
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+ settings.setdefault('barcodes', '/home/carruthers/Documents/SCREEN_BARCODES.csv')
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  settings.setdefault('plate_dict', {'EO1': 'plate1', 'EO2': 'plate2', 'EO3': 'plate3', 'EO4': 'plate4', 'EO5': 'plate5', 'EO6': 'plate6', 'EO7': 'plate7', 'EO8': 'plate8'})
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  settings.setdefault('test', False)
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  settings.setdefault('verbose', True)
{spacr-0.0.80 → spacr-0.0.81/spacr.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: spacr
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- Version: 0.0.80
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+ Version: 0.0.81
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  Summary: Spatial phenotype analysis of crisp screens (SpaCr)
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  Home-page: https://github.com/EinarOlafsson/spacr
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  Author: Einar Birnir Olafsson
@@ -38,6 +38,7 @@ Requires-Dist: PyWavelets<2.0,>=1.6.0
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  Requires-Dist: torchcam<1.0,>=0.4.0
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  Requires-Dist: ttf_opensans>=2020.10.30
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  Requires-Dist: customtkinter<6.0,>=5.2.2
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+ Requires-Dist: biopython<2.0,>=1.80
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  Requires-Dist: lxml<6.0,>=5.1.0
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  Provides-Extra: dev
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  Requires-Dist: pytest>=3.9; extra == "dev"
{spacr-0.0.80 → spacr-0.0.81}/spacr.egg-info/requires.txt RENAMED
@@ -27,6 +27,7 @@ PyWavelets<2.0,>=1.6.0
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  torchcam<1.0,>=0.4.0
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  ttf_opensans>=2020.10.30
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  customtkinter<6.0,>=5.2.2
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+ biopython<2.0,>=1.80
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  lxml<6.0,>=5.1.0
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  [dev]
{spacr-0.0.80 → spacr-0.0.81}/LICENSE RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/MANIFEST.in RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/README.rst RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/setup.cfg RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/__init__.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/__main__.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/annotate_app.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/chris.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/core.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/deep_spacr.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/graph_learning.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/gui.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/gui_2.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/gui_classify_app.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/gui_mask_app.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/gui_measure_app.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/gui_sim_app.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/gui_utils.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/io.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/logger.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/mask_app.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/measure.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/plot.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/sim.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/timelapse.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/utils.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/spacr/version.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/tests/test_core.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/tests/test_gui_sim_app.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/tests/test_gui_utils.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/tests/test_io.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/tests/test_mask_app.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/tests/test_measure.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/tests/test_plot.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/tests/test_sim.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/tests/test_timelapse.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/tests/test_train.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/tests/test_umap.py RENAMED
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{spacr-0.0.80 → spacr-0.0.81}/tests/test_utils.py RENAMED
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