sollertia-shared-assets 8.0.0__tar.gz

sollertia_shared_assets-8.0.0/.claude/settings.local.json

@@ -0,0 +1,102 @@
+{
+  "permissions": {
+    "allow": [
+      "Bash(git mv:*)",
+      "Bash(python3 -c \"from sl_shared_assets import MesoscopeSystemConfiguration\")",
+      "Bash(PYTHONPATH=src python:*)",
+      "Bash(python -c \"from sollertia_shared_assets.data_classes.session_data import SessionData; print\\('OK'\\)\")",
+      "Bash(grep:*)",
+      "Bash(python:*)",
+      "Bash(pip show:*)",
+      "Bash(xargs cat:*)",
+      "Bash(git stash:*)",
+      "Bash(awk 'length > 120 {print NR\": \"length\" chars\"}' src/sollertia_shared_assets/data_classes/dataset_data.py)",
+      "Bash(pip install:*)",
+      "Bash(unset PYTHONPATH)",
+      "Bash(env -u PYTHONPATH python -m pytest tests/data_classes_test.py --import-mode=append --cov=sollertia_shared_assets.data_classes --cov-report=term-missing --no-header -q)",
+      "Bash(COVERAGE_CORE=pytrace python -m coverage erase)",
+      "Bash(COVERAGE_CORE=pytrace python -m coverage run --source=sollertia_shared_assets.data_classes -m pytest tests/data_classes_test.py --no-header -q)",
+      "Bash(wc:*)",
+      "Bash(.tox/lint/bin/python:*)",
+      "Bash(uv pip:*)",
+      "Bash(git --no-pager diff src/sollertia_shared_assets/configuration/configuration_utilities.py)",
+      "Read(//tmp/**)",
+      "Bash(git --no-pager diff -U3 src/sollertia_shared_assets/configuration/configuration_utilities.py)",
+      "Bash(git:*)",
+      "Bash(curl -s https://pypi.org/pypi/ataraxis-time/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('ataraxis-time:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/ataraxis-base-utilities/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('ataraxis-base-utilities:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/ataraxis-data-structures/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('ataraxis-data-structures:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/ataraxis-automation/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('ataraxis-automation:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/appdirs/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('appdirs:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/click/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('click:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/polars/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('polars:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/pyarrow/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('pyarrow:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/mcp/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('mcp:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/httpx/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('httpx:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/tox/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('tox:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/tox-uv/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('tox-uv:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/uv/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('uv:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/types-appdirs/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('types-appdirs:', d['info']['version']\\)\")",
+      "Bash(curl -s https://pypi.org/pypi/hatchling/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('hatchling:', d['info']['version']\\)\")",
+      "Bash(curl -sL https://pypi.org/pypi/click/json)",
+      "Bash(curl -sL https://pypi.org/pypi/platformdirs/json)",
+      "Bash(python3 -c \"import json,sys; d=json.load\\(sys.stdin\\); print\\('platformdirs:', d['info']['version']\\)\")",
+      "WebFetch(domain:pypi.org)",
+      "WebFetch(domain:www.apache.org)",
+      "Bash(curl -fsSL https://www.apache.org/licenses/LICENSE-2.0.txt -o /tmp/apache-2.0.txt)",
+      "Bash(PYTHONPATH=src .tox/lint/bin/python -m pytest tests/configuration_test.py -k \"server_configuration\" --no-header -q)",
+      "Bash(PYTHONPATH=src .tox/lint/bin/python -m pytest tests/configuration_test.py --no-header -q)",
+      "Bash(.tox/lint/bin/ruff check:*)",
+      "Bash(.tox/lint/bin/ruff format:*)",
+      "Bash(find:*)",
+      "Read(//home/cyberaxolotl/.claude/plans/**)",
+      "Bash(mkdir -p /home/cyberaxolotl/.claude/plans/)",
+      "Bash(cat envs/*.yml)",
+      "Bash(conda env:*)",
+      "Bash(mamba env:*)",
+      "Bash(/home/cyberaxolotl/miniforge3/envs/slsa_dev_lin/bin/python -c ':*)",
+      "Bash(/home/cyberaxolotl/miniforge3/envs/slsa_dev_lin/bin/python:*)",
+      "Bash(PYTHONPATH=src /home/cyberaxolotl/miniforge3/envs/slsa_dev_lin/bin/python -m pytest tests/ -x -q)",
+      "Bash(PYTHONPATH=src /home/cyberaxolotl/miniforge3/envs/slsa_dev_lin/bin/python -m pytest tests/ -q --deselect tests/configuration_test.py::test_trial_stimulus_location_precedes_trigger_zone)",
+      "Bash(awk '{print length, NR}' src/sollertia_shared_assets/interfaces/mcp_server.py)",
+      "Bash(mkdir -p /home/cyberaxolotl/Desktop/GitHubRepos/sollertia/plugins/experiment/skills /home/cyberaxolotl/Desktop/GitHubRepos/sollertia/plugins/configuration/skills /home/cyberaxolotl/Desktop/GitHubRepos/sollertia/plugins/processing/skills)",
+      "Bash(cp -r /home/cyberaxolotl/Desktop/GitHubRepos/sollertia-experiment/.claude/skills/acquisition-system-setup /home/cyberaxolotl/Desktop/GitHubRepos/sollertia-experiment/.claude/skills/data-management /home/cyberaxolotl/Desktop/GitHubRepos/sollertia-experiment/.claude/skills/experiment-design /home/cyberaxolotl/Desktop/GitHubRepos/sollertia-experiment/.claude/skills/system-health-check /home/cyberaxolotl/Desktop/GitHubRepos/sollertia-experiment/.claude/skills/modifying-mesoscope-vr-system /home/cyberaxolotl/Desktop/GitHubRepos/sollertia-experiment/.claude/skills/zaber-interface /home/cyberaxolotl/Desktop/GitHubRepos/sollertia/plugins/experiment/skills/)",
+      "Bash(cp -r /home/cyberaxolotl/Desktop/GitHubRepos/sollertia-unity-tasks/.claude/skills/configuration-verification /home/cyberaxolotl/Desktop/GitHubRepos/sollertia/plugins/experiment/skills/)",
+      "Bash(rm -rf /home/cyberaxolotl/Desktop/GitHubRepos/sollertia/plugins/experiment/skills/experiment-design)",
+      "Bash(mv /home/cyberaxolotl/Desktop/GitHubRepos/sollertia/plugins/experiment/skills/acquisition-system-setup/MESOSCOPE_REFERENCE.md /home/cyberaxolotl/Desktop/GitHubRepos/sollertia/plugins/configuration/skills/system-configuration/MESOSCOPE_REFERENCE.md)",
+      "Read(//home/cyberaxolotl/Desktop/GitHubRepos/sollertia/plugins/experiment/skills/**)",
+      "Read(//home/cyberaxolotl/Desktop/GitHubRepos/sollertia/**)",
+      "Bash(grep -nE \"experiment-design|/experiment-configuration\" plugins/experiment/skills/pipeline/SKILL.md plugins/experiment/skills/acquisition-system-setup/SKILL.md plugins/experiment/skills/camera-interface/SKILL.md plugins/experiment/skills/microcontroller-interface/SKILL.md plugins/experiment/skills/data-management/SKILL.md plugins/experiment/skills/system-health-check/SKILL.md plugins/experiment/skills/modifying-mesoscope-vr-system/SKILL.md plugins/experiment/skills/zaber-interface/SKILL.md plugins/experiment/skills/configuration-verification/SKILL.md)",
+      "Bash(sed 's/\\(.*$//')",
+      "Bash(python3:*)",
+      "Bash(ls:*)",
+      "Bash(read sym:*)",
+      "Bash(sed -i -e 's/, error_response = /, error = /g' -e 's/if error_response is not None/if error is not None/g' -e 's/return error_response$/return error/' -e 's/\"error_response\"/\"error\"/g' configuration_tools.py data_tools.py)",
+      "Bash(sed -i -e 's/urllib\\\\.error_response/urllib.error/g' -e 's/error_response dict/error dict/g' unity_tools.py)",
+      "Bash(read d:*)",
+      "Bash(cat /home/cyberaxolotl/Desktop/GitHubRepos/*/mcp.json)",
+      "Bash(xargs -I {} bash -c 'echo \"=== {} ===\" && grep \"experiment_name\\\\|segments:\\\\|name:\" {} | head -20')",
+      "Bash(xargs dirname:*)",
+      "Bash(xargs -I {} bash -c 'ls {}/raw_data/')"
+    ]
+  },
+  "enabledMcpjsonServers": [
+    "sl-migration",
+    "sl-shared-assets"
+  ]
+}

sollertia_shared_assets-8.0.0/.gitignore

@@ -0,0 +1,202 @@
+# This version of gitignore is designed to work for python projects using C++ computational core. It has been
+# configured, it to exclude certain jetbrains files, but additional configuration may be needed for contributors
+# seeking to use VSCode or other IDE / code editor.
+
+# Prerequisites
+*.d
+
+# Compiled Object files
+*.slo
+*.lo
+*.o
+*.obj
+
+# Precompiled Headers
+*.gch
+*.pch
+
+# Compiled Dynamic libraries
+*.so
+*.dylib
+*.dll
+
+# Fortran module files
+*.mod
+*.smod
+
+# Compiled Static libraries
+*.lai
+*.la
+*.a
+*.lib
+
+# Executables
+*.exe
+*.out
+*.app
+
+# Platformio files
+*.pio
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+ python-version
+
+# pipenv
+Pipfile.lock
+
+# poetry
+poetry.lock
+
+# uv
+uv.lock
+
+# pdm
+pdm.lock
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+.idea/**/workspace.xml
+.idea/**/tasks.xml
+.idea/**/usage.statistics.xml
+.idea/**/shelf
+
+# OSx
+.DS_Store
+
+# Project files that are part of the general Sun Lab C-Python project architecture that should not be uploaded to and
+# from Github
+/cmake-build-debug/
+/reports/
+/docs/source/doxygen/
+/docs/build/
+/stubs/
+/.pypirc
+
+# Project: Add any project-specific exclusions here
+/temp

sollertia_shared_assets-8.0.0/.idea/.gitignore

@@ -0,0 +1,3 @@
+# Default ignored files
+/shelf/
+/workspace.xml

sollertia_shared_assets-8.0.0/.idea/dictionaries/project.xml

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+<component name="ProjectDictionaryState">
+  <dictionary name="project">
+    <words>
+      <w>appauthor</w>
+      <w>biohpc</w>
+      <w>cbsuwsun</w>
+      <w>checksummed</w>
+      <w>cybermouse</w>
+      <w>doctrees</w>
+      <w>envname</w>
+      <w>headbar</w>
+      <w>hexstring</w>
+      <w>inkaros</w>
+      <w>kondratyev</w>
+      <w>kushaan</w>
+      <w>kushaangupta</w>
+      <w>loadgroup</w>
+      <w>myuser</w>
+      <w>nanoliters</w>
+      <w>stubgen</w>
+      <w>testpass</w>
+      <w>testuser</w>
+      <w>yeung</w>
+    </words>
+  </dictionary>
+</component>

sollertia_shared_assets-8.0.0/.idea/inspectionProfiles/Project_Default.xml

@@ -0,0 +1,48 @@
+<component name="InspectionProjectProfileManager">
+  <profile version="1.0">
+    <option name="myName" value="Project Default" />
+    <inspection_tool class="DuplicatedCode" enabled="false" level="WEAK WARNING" enabled_by_default="false" />
+    <inspection_tool class="LongLine" enabled="true" level="WARNING" enabled_by_default="true" />
+    <inspection_tool class="PyAugmentAssignmentInspection" enabled="true" level="WEAK WARNING" enabled_by_default="true" />
+    <inspection_tool class="PyBroadExceptionInspection" enabled="true" level="INFORMATION" enabled_by_default="true" editorAttributes="INFORMATION_ATTRIBUTES" />
+    <inspection_tool class="PyPackageRequirementsInspection" enabled="false" level="WARNING" enabled_by_default="false">
+      <option name="ignoredPackages">
+        <list>
+          <option value="pyyaml" />
+        </list>
+      </option>
+    </inspection_tool>
+    <inspection_tool class="PyPep8Inspection" enabled="true" level="WEAK WARNING" enabled_by_default="true">
+      <option name="ignoredErrors">
+        <list>
+          <option value="E402" />
+          <option value="E722" />
+          <option value="E203" />
+          <option value="E501" />
+        </list>
+      </option>
+    </inspection_tool>
+    <inspection_tool class="PyPep8NamingInspection" enabled="true" level="WEAK WARNING" enabled_by_default="true">
+      <option name="ignoredErrors">
+        <list>
+          <option value="N813" />
+        </list>
+      </option>
+    </inspection_tool>
+    <inspection_tool class="PyShadowingBuiltinsInspection" enabled="true" level="WEAK WARNING" enabled_by_default="true">
+      <option name="ignoredNames">
+        <list>
+          <option value="print" />
+        </list>
+      </option>
+    </inspection_tool>
+    <inspection_tool class="PyUnresolvedReferencesInspection" enabled="true" level="WARNING" enabled_by_default="true">
+      <option name="ignoredIdentifiers">
+        <list>
+          <option value="write_data" />
+        </list>
+      </option>
+    </inspection_tool>
+    <inspection_tool class="StructuralWrap" enabled="false" level="TYPO" enabled_by_default="false" />
+  </profile>
+</component>

sollertia_shared_assets-8.0.0/.idea/inspectionProfiles/profiles_settings.xml

@@ -0,0 +1,6 @@
+<component name="InspectionProjectProfileManager">
+  <settings>
+    <option name="USE_PROJECT_PROFILE" value="false" />
+    <version value="1.0" />
+  </settings>
+</component>

sollertia_shared_assets-8.0.0/.idea/jsonSchemas.xml

@@ -0,0 +1,27 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="JsonSchemaMappingsProjectConfiguration">
+    <state>
+      <map>
+        <entry key="No JSON schema">
+          <value>
+            <SchemaInfo>
+              <option name="ignoredFile" value="true" />
+              <option name="name" value="No JSON schema" />
+              <option name="relativePathToSchema" value="" />
+              <option name="applicationDefined" value="true" />
+              <option name="patterns">
+                <list>
+                  <Item>
+                    <option name="path" value="file://$PROJECT_DIR$/pyproject.toml" />
+                  </Item>
+                </list>
+              </option>
+              <option name="isIgnoredFile" value="true" />
+            </SchemaInfo>
+          </value>
+        </entry>
+      </map>
+    </state>
+  </component>
+</project>

sollertia_shared_assets-8.0.0/.idea/misc.xml

@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="Black">
+    <option name="sdkName" value="Python 3.13" />
+  </component>
+  <component name="ProjectRootManager" version="2" project-jdk-name="slsa_dev_lin" project-jdk-type="Python SDK" />
+</project>

sollertia_shared_assets-8.0.0/.idea/modules.xml

@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="ProjectModuleManager">
+    <modules>
+      <module fileurl="file://$PROJECT_DIR$/.idea/sollertia-shared-assets.iml" filepath="$PROJECT_DIR$/.idea/sollertia-shared-assets.iml" />
+    </modules>
+  </component>
+</project>

sollertia_shared_assets-8.0.0/.idea/pyLspTools.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="RuffConfiguration">
+    <option name="enabled" value="true" />
+  </component>
+</project>

sollertia_shared_assets-8.0.0/.idea/pyProjectModel.xml

@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="PyProjectModelSettings">
+    <option name="showConfigurationNotification" value="false" />
+    <option name="usePyprojectToml" value="true" />
+  </component>
+</project>

sollertia_shared_assets-8.0.0/.idea/sollertia-shared-assets.iml

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+<?xml version="1.0" encoding="UTF-8"?>
+<module external.system.id="pyproject.toml" type="PYTHON_MODULE" version="4">
+  <component name="NewModuleRootManager">
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+      <sourceFolder url="file://$MODULE_DIR$/src" isTestSource="false" />
+      <excludeFolder url="file://$MODULE_DIR$/.venv" />
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+    <orderEntry type="jdk" jdkName="slsa_dev_win" jdkType="Python SDK" />
+    <orderEntry type="sourceFolder" forTests="false" />
+  </component>
+</module>

sollertia_shared_assets-8.0.0/.idea/vcs.xml

@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+  <component name="VcsDirectoryMappings">
+    <mapping directory="" vcs="Git" />
+    <mapping directory="$PROJECT_DIR$" vcs="Git" />
+  </component>
+</project>