snk-cli 0.5.4__tar.gz → 0.5.5__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {snk_cli-0.5.4 → snk_cli-0.5.5}/PKG-INFO +1 -1
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/__about__.py +1 -1
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/cli.py +3 -2
- {snk_cli-0.5.4 → snk_cli-0.5.5}/.github/workflows/publish.yml +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/.github/workflows/tests.yml +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/.gitignore +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/LICENSE.txt +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/README.md +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/docs/index.md +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/docs/reference/cli.md +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/docs/reference/config.md +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/docs/reference/dynamic_typer.md +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/docs/reference/options.md +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/docs/reference/subcommands.md +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/docs/reference/testing.md +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/docs/reference/utils.md +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/docs/reference/validate.md +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/docs/reference/workflow.md +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/mkdocs.yml +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/pyproject.toml +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/__init__.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/conda.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/config/__init__.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/config/config.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/config/utils.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/dynamic_typer.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/options/__init__.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/options/option.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/options/utils.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/subcommands/__init__.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/subcommands/config.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/subcommands/env.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/subcommands/profile.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/subcommands/run.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/subcommands/script.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/testing.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/utils.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/validate.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/src/snk_cli/workflow.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/__init__.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/conftest.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/artic_v4.1.bed +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/config.yaml +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/cov.fasta +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/print_config/Snakefile +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/print_config/cli.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/print_config/config.yaml +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/print_config/snk.yaml +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/workflow/cli.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/workflow/config.yaml +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/workflow/resources/data.txt +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/workflow/snk.yaml +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/workflow/things/__about__.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/workflow/workflow/Snakefile +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/workflow/workflow/envs/wget.yml +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/workflow/workflow/profiles/base/config.yaml +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/workflow/workflow/profiles/slurm/config.yaml +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/data/workflow/workflow/scripts/hello.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/test_SnkConfig.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/test_cli/__init__.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/test_cli/test_dynamic_options.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/test_cli/test_profile.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/test_cli/test_run.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/test_cli/test_snk_config.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/test_cli/test_subcommands.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/test_cli/test_validate.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/test_cli/test_workflow_cli.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/test_conda_env.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/test_dynamic_typer.py +0 -0
- {snk_cli-0.5.4 → snk_cli-0.5.5}/tests/utils.py +0 -0
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@@ -82,10 +82,11 @@ class CLI(DynamicTyper):
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os.environ["CONDA_SUBDIR"] = "osx-64"
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user = os.environ.get("USER")
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if platform.system() in ["Linux", "Darwin"] and not os.environ.get("XDG_CACHE_HOME") and user:
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# this prevents OSError: [Errno 39] Directory not empty: 'envs'
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# on older versions of snakemake
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os.environ["XDG_CACHE_HOME"] = f"/tmp
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os.environ["XDG_CACHE_HOME"] = f"/tmp/snk-{user}-{self.name}"
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# dynamically create the logo
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self.logo = self._create_logo(
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