snk-cli 0.5.0__tar.gz → 0.5.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {snk_cli-0.5.0 → snk_cli-0.5.1}/PKG-INFO +1 -1
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/__about__.py +1 -1
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/dynamic_typer.py +5 -2
- {snk_cli-0.5.0 → snk_cli-0.5.1}/.github/workflows/publish.yml +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/.github/workflows/tests.yml +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/.gitignore +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/LICENSE.txt +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/README.md +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/docs/index.md +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/docs/reference/cli.md +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/docs/reference/config.md +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/docs/reference/dynamic_typer.md +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/docs/reference/options.md +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/docs/reference/subcommands.md +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/docs/reference/testing.md +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/docs/reference/utils.md +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/docs/reference/validate.md +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/docs/reference/workflow.md +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/mkdocs.yml +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/pyproject.toml +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/__init__.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/cli.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/conda.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/config/__init__.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/config/config.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/config/utils.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/options/__init__.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/options/option.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/options/utils.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/subcommands/__init__.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/subcommands/config.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/subcommands/env.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/subcommands/profile.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/subcommands/run.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/subcommands/script.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/testing.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/utils.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/validate.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/src/snk_cli/workflow.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/__init__.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/conftest.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/artic_v4.1.bed +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/config.yaml +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/cov.fasta +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/print_config/Snakefile +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/print_config/cli.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/print_config/config.yaml +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/print_config/snk.yaml +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/workflow/cli.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/workflow/config.yaml +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/workflow/resources/data.txt +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/workflow/snk.yaml +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/workflow/things/__about__.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/workflow/workflow/Snakefile +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/workflow/workflow/envs/wget.yml +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/workflow/workflow/profiles/base/config.yaml +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/workflow/workflow/profiles/slurm/config.yaml +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/data/workflow/workflow/scripts/hello.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/test_cli/__init__.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/test_cli/test_dynamic_options.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/test_cli/test_profile.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/test_cli/test_run.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/test_cli/test_snk_config.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/test_cli/test_subcommands.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/test_cli/test_validate.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/test_cli/test_workflow_cli.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/test_conda_env.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/test_dynamic_typer.py +0 -0
- {snk_cli-0.5.0 → snk_cli-0.5.1}/tests/utils.py +0 -0
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@@ -152,9 +152,12 @@ class DynamicTyper:
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if option.type is Enum or option.choices:
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if not option.choices:
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raise ValueError(f"Enum type {option.name} requires choices to be defined.")
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annotation_type = Enum('
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annotation_type = Enum(f'{option.name}Enum', {e: e for e in option.choices})
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if default:
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try:
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default = annotation_type(default)
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except ValueError:
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raise ValueError(f"Default value {default} for option {option.name} is not a valid choice.")
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return Parameter(
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option.name,
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kind=Parameter.POSITIONAL_OR_KEYWORD,
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