snk-cli 0.2.0__tar.gz → 0.2.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {snk_cli-0.2.0 → snk_cli-0.2.1}/PKG-INFO +1 -1
- {snk_cli-0.2.0 → snk_cli-0.2.1}/pyproject.toml +1 -6
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/__about__.py +1 -1
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/subcommands/run.py +1 -3
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/test_cli/test_run.py +9 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/.github/workflows/publish.yml +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/.github/workflows/tests.yml +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/.gitignore +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/LICENSE.txt +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/README.md +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/docs/index.md +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/docs/reference/cli.md +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/docs/reference/config.md +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/docs/reference/dynamic_typer.md +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/docs/reference/options.md +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/docs/reference/subcommands.md +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/docs/reference/testing.md +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/docs/reference/utils.md +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/docs/reference/validate.md +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/docs/reference/workflow.md +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/mkdocs.yml +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/__init__.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/cli.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/conda.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/config/__init__.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/config/config.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/config/utils.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/dynamic_typer.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/options/__init__.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/options/option.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/options/utils.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/subcommands/__init__.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/subcommands/config.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/subcommands/env.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/subcommands/profile.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/subcommands/script.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/testing.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/utils.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/validate.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/src/snk_cli/workflow.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/__init__.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/conftest.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/artic_v4.1.bed +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/config.yaml +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/cov.fasta +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/print_config/Snakefile +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/print_config/cli.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/print_config/config.yaml +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/print_config/snk.yaml +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/workflow/cli.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/workflow/config.yaml +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/workflow/resources/data.txt +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/workflow/snk.yaml +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/workflow/things/__about__.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/workflow/workflow/Snakefile +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/workflow/workflow/envs/python.yml +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/workflow/workflow/profiles/base/config.yaml +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/workflow/workflow/profiles/slurm/config.yaml +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/data/workflow/workflow/scripts/hello.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/test_cli/__init__.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/test_cli/test_dynamic_options.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/test_cli/test_snk_config.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/test_cli/test_subcommands.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/test_cli/test_validate.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/test_cli/test_workflow_cli.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/test_conda_env.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/test_dynamic_typer.py +0 -0
- {snk_cli-0.2.0 → snk_cli-0.2.1}/tests/utils.py +0 -0
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@@ -46,16 +46,11 @@ path = "src/snk_cli/__about__.py"
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[[tool.hatch.envs.snakemake.matrix]]
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snakemake = ["7.32.4", "8.10.8"]
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[tool.hatch.snakemake.test]
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dependencies = [
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"coverage[toml]>=6.5",
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"pytest",
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"snakemake=={matrix:snakemake}"]
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[tool.hatch.envs.default]
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dependencies = [
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"coverage[toml]>=6.5",
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"pytest",
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"snakemake=={matrix:snakemake:7.32.4}",
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]
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[tool.hatch.envs.default.scripts]
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test = "pytest {args:tests}"
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@@ -39,3 +39,12 @@ def test_run_with_config(tmp_path):
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assert res.exit_code == 0, res.stderr
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assert "cli" in res.stdout, res.stderr
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def test_snakemake_help(local_runner: SnkCliRunner):
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res = local_runner(["run", "-hs"])
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assert res.exit_code == 0, res.stderr
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assert "snakemake" in res.stdout
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def test_snakemake_version(local_runner: SnkCliRunner):
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res = local_runner(["run", "--snake-v"])
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assert res.exit_code == 0, res.stderr
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assert res.stdout in ["7.32.4\n", "8.10.8\n"]
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