snakemake-interface-software-deployment-plugins 0.10.2__tar.gz → 0.12.0__tar.gz

{snakemake_interface_software_deployment_plugins-0.10.2 → snakemake_interface_software_deployment_plugins-0.12.0}/CHANGELOG.md

@@ -1,5 +1,26 @@
 # Changelog
 
+## [0.12.0](https://github.com/snakemake/snakemake-interface-software-deployment-plugins/compare/v0.11.0...v0.12.0) (2026-02-26)
+
+
+### Features
+
+* make env spec generic ([c7b9971](https://github.com/snakemake/snakemake-interface-software-deployment-plugins/commit/c7b9971d779909081e50b45ff5f858e67435bd08))
+
+
+### Bug Fixes
+
+* make generic args more flexible ([af21397](https://github.com/snakemake/snakemake-interface-software-deployment-plugins/commit/af21397717e9400c5a335f3fde5950b9f522626c))
+* relax typing ([0f10324](https://github.com/snakemake/snakemake-interface-software-deployment-plugins/commit/0f10324da494b2fe4b46616aa283abd7f96dcc09))
+* simplify mountpoint information into self.mountpoints, complemented by self.tempdir holding the temporary directory to use ([7112ee6](https://github.com/snakemake/snakemake-interface-software-deployment-plugins/commit/7112ee6bb5eed944dab7da90a30255431b0042bd))
+
+## [0.11.0](https://github.com/snakemake/snakemake-interface-software-deployment-plugins/compare/v0.10.2...v0.11.0) (2026-02-23)
+
+
+### Features
+
+* make EnvBase generic; enable EnvSpecBase recursive attribute modification ([1425a51](https://github.com/snakemake/snakemake-interface-software-deployment-plugins/commit/1425a516a5c7152bdb6e291d602247ab8e0b4412))
+
 ## [0.10.2](https://github.com/snakemake/snakemake-interface-software-deployment-plugins/compare/v0.10.1...v0.10.2) (2026-02-18)
 
 

{snakemake_interface_software_deployment_plugins-0.10.2 → snakemake_interface_software_deployment_plugins-0.12.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: snakemake-interface-software-deployment-plugins
-Version: 0.10.2
+Version: 0.12.0
 Summary: This package provides a stable interface for interactions between Snakemake and its software deployment plugins.
 Project-URL: repository, https://github.com/snakemake/snakemake-interface-software-deployment-plugins
 Author-email: Johannes Köster <johannes.koester@uni-due.de>

{snakemake_interface_software_deployment_plugins-0.10.2 → snakemake_interface_software_deployment_plugins-0.12.0}/pyproject.toml

@@ -6,7 +6,7 @@ description = "This package provides a stable interface for interactions between
 license = "MIT"
 name = "snakemake-interface-software-deployment-plugins"
 readme = "README.md"
-version = "0.10.2"
+version = "0.12.0"
 requires-python = ">=3.11,<4.0"
 dependencies = [
     "argparse-dataclass >=2.0.0,<3.0",

{snakemake_interface_software_deployment_plugins-0.10.2 → snakemake_interface_software_deployment_plugins-0.12.0}/snakemake_interface_software_deployment_plugins/__init__.py

@@ -21,14 +21,11 @@ from typing import (
     Self,
     Tuple,
     Type,
-    TypeVar,
     Union,
+    Callable,
 )
 import subprocess as sp
 
-from snakemake_interface_software_deployment_plugins.settings import (
-    SoftwareDeploymentSettingsBase,
-)
 from snakemake_interface_common.exceptions import WorkflowError
 
 
@@ -60,8 +57,14 @@ class EnvSpecBase(ABC):
         self._obj_hash: Optional[int] = None
 
     @classmethod
-    def env_cls(cls):
-        return cls.module().EnvBase
+    def env_cls(cls) -> Type["EnvBase"]:
+        try:
+            return cls.module().EnvBase
+        except AttributeError:
+            raise AttributeError(
+                "No class Env found next to EnvSpec class. "
+                "Make sure to import or define it there."
+            )
 
     @classmethod
     @abstractmethod
@@ -92,24 +95,32 @@ class EnvSpecBase(ABC):
             return True
         return False
 
-    def modify_source_paths(self, modify_func) -> Self:
+    def modify_source_paths(self, modify_func: Callable) -> Self:
+        return self._modify_attributes("source_path_attributes", modify_func)
+
+    def modify_identity_attributes(self, modify_func: Callable) -> Self:
+        return self._modify_attributes("identity_attributes", modify_func)
+
+    def _modify_attributes(self, attribute_method: str, modify_func: Callable) -> Self:
         if self.has_source_paths():
             self_or_copied = copy(self)
         else:
             return self
-        for attr_name in self_or_copied.source_path_attributes():
+        for attr_name in getattr(self_or_copied, attribute_method):
             current_value = getattr(self_or_copied, attr_name)
             if current_value is not None:
                 setattr(self_or_copied, attr_name, modify_func(current_value))
 
         if self_or_copied.within is not None:
-            self_or_copied.within = self_or_copied.within.modify_source_paths(
-                modify_func
+            self_or_copied.within = self_or_copied.within._modify_attributes(
+                attribute_method,
+                modify_func,
             )
 
         if self_or_copied.fallback is not None:
-            self_or_copied.fallback = self_or_copied.fallback.modify_source_paths(
-                modify_func
+            self_or_copied.fallback = self_or_copied.fallback._modify_attributes(
+                attribute_method,
+                modify_func,
             )
         return self_or_copied
 
@@ -157,30 +168,28 @@ class ShellExecutable:
         return sp.run([self.executable] + self.args + [self.command_arg, cmd], **kwargs)
 
 
-TSettings = TypeVar("TSettings", bound="SoftwareDeploymentSettingsBase")
-
-
 class EnvBase(ABC):
     _cache: ClassVar[Dict[Tuple[Type["EnvBase"], Optional["EnvBase"]], Any]] = {}
 
     def __init__(
         self,
-        spec: EnvSpecBase,
+        spec,
         within: Optional["EnvBase"],
-        settings: Optional[SoftwareDeploymentSettingsBase],
+        settings,
         shell_executable: ShellExecutable,
+        mountpoints: List[Path],
         tempdir: Path,
-        source_cache: Path,
         cache_prefix: Path,
         deployment_prefix: Path,
         pinfile_prefix: Path,
     ):
+        # type annotation for spec and settings is left for implementing plugins
         self.spec = spec
         self.within = within
-        self.settings: Optional[SoftwareDeploymentSettingsBase] = settings
+        self.settings = settings
         self.shell_executable = shell_executable
+        self.mountpoints = mountpoints
         self.tempdir = tempdir
-        self.source_cache: Path = source_cache
         self._deployment_prefix: Path = deployment_prefix
         self._cache_prefix: Path = cache_prefix
         self._pinfile_prefix: Path = pinfile_prefix