snakemake-executor-plugin-slurm 0.10.2__tar.gz → 0.11.1__tar.gz

{snakemake_executor_plugin_slurm-0.10.2 → snakemake_executor_plugin_slurm-0.11.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: snakemake-executor-plugin-slurm
-Version: 0.10.2
+Version: 0.11.1
 Summary: A Snakemake executor plugin for submitting jobs to a SLURM cluster.
 Home-page: https://github.com/snakemake/snakemake-executor-plugin-slurm
 License: MIT
@@ -12,6 +12,7 @@ Classifier: License :: OSI Approved :: MIT License
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
 Requires-Dist: snakemake-executor-plugin-slurm-jobstep (>=0.2.0,<0.3.0)
 Requires-Dist: snakemake-interface-common (>=1.13.0,<2.0.0)
 Requires-Dist: snakemake-interface-executor-plugins (>=9.1.1,<10.0.0)

{snakemake_executor_plugin_slurm-0.10.2 → snakemake_executor_plugin_slurm-0.11.1}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "snakemake-executor-plugin-slurm"
-version = "0.10.2"
+version = "0.11.1"
 description = "A Snakemake executor plugin for submitting jobs to a SLURM cluster."
 authors = [
     "Christian Meesters <meesters@uni-mainz.de>",

{snakemake_executor_plugin_slurm-0.10.2 → snakemake_executor_plugin_slurm-0.11.1}/snakemake_executor_plugin_slurm/__init__.py

@@ -42,6 +42,18 @@ class ExecutorSettings(ExecutorSettingsBase):
             "required": False,
         },
     )
+    requeue: bool = field(
+        default=False,
+        metadata={
+            "help": """
+                    Allow requeuing preempted of failed jobs,
+                    if no cluster default. Results in `sbatch ... --requeue ...`
+                    This flag has no effect, if not set.
+                    """,
+            "env_var": False,
+            "required": False,
+        },
+    )
 
 
 # Required:
@@ -79,8 +91,6 @@ class Executor(RemoteExecutor):
         self._fallback_account_arg = None
         self._fallback_partition = None
         self._preemption_warning = False  # no preemption warning has been issued
-        # providing a short-hand, even if subsequent calls seem redundant
-        self.settings: ExecutorSettings = self.workflow.executor_settings
 
     def warn_on_jobcontext(self, done=None):
         if not done:
@@ -145,6 +155,9 @@ class Executor(RemoteExecutor):
         call += self.get_account_arg(job)
         call += self.get_partition_arg(job)
 
+        if self.workflow.executor_settings.requeue:
+            call += " --requeue"
+
         if job.resources.get("clusters"):
             call += f" --clusters {job.resources.clusters}"