smd-reports 0.1.0__tar.gz

smd_reports-0.1.0/.github/ISSUE_TEMPLATE/01-bug.yml

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+name: Bug report
+description: Report incorrect behavior or a regression.
+labels:
+- bug
+- 'status: triage'
+body:
+- type: markdown
+  attributes:
+    value: Use example data only. Do not include patient information, credentials or confidential files.
+      Report security vulnerabilities through the private security-reporting link.
+- type: dropdown
+  id: priority
+  attributes:
+    label: Priority
+    description: Select the impact. Maintainers may adjust the priority.
+    options:
+    - P0 - Critical
+    - P1 - High
+    - P2 - Normal
+    - P3 - Low
+    default: 2
+  validations:
+    required: true
+- type: dropdown
+  id: component
+  attributes:
+    label: Component
+    options:
+    - JSON input and validation
+    - Python interface
+    - Command-line tools
+    - HTML rendering
+    - PDF rendering
+    - Page layout and branding
+    - Images and plots
+    - English and Swedish labels
+    - Packaging and installation
+    - CI and development tools
+    - Documentation
+    - Not sure
+    multiple: true
+  validations:
+    required: true
+- type: dropdown
+  id: report-template
+  attributes:
+    label: Report template
+    options:
+    - Generic
+    - Coyote3
+    - Genexus
+    - CLL Genie
+    - PGx
+    - Not template-specific
+    multiple: true
+  validations:
+    required: true
+- type: textarea
+  id: problem
+  attributes:
+    label: What happened?
+  validations:
+    required: true
+- type: textarea
+  id: reproduction
+  attributes:
+    label: Steps to reproduce
+    description: Include a minimal JSON example or command using example data.
+  validations:
+    required: true
+- type: textarea
+  id: expected
+  attributes:
+    label: Expected behavior
+  validations:
+    required: true
+- type: input
+  id: package-version
+  attributes:
+    label: Package version
+    description: 'Run: python -c "import smd_reports; print(smd_reports.__version__)"'
+  validations:
+    required: true
+- type: input
+  id: python-version
+  attributes:
+    label: Python version
+    description: 'Run: python --version'
+  validations:
+    required: true
+- type: dropdown
+  id: os
+  attributes:
+    label: Operating system
+    options:
+    - Linux
+    - Windows
+    - macOS
+    - Other
+  validations:
+    required: true
+- type: textarea
+  id: logs
+  attributes:
+    label: Error output
+    description: Include relevant output after removing confidential information.
+    render: text
+  validations:
+    required: false
+- type: checkboxes
+  id: checks
+  attributes:
+    label: Before submitting
+    options:
+    - label: I searched the existing issues.
+      required: true
+    - label: My examples contain no patient information, credentials or confidential data.
+      required: true
+  validations:
+    required: true

smd_reports-0.1.0/.github/ISSUE_TEMPLATE/02-feature.yml

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+name: Feature request
+description: Propose a change to package functionality.
+labels:
+- enhancement
+- 'status: triage'
+body:
+- type: markdown
+  attributes:
+    value: Use example data only. Do not include patient information, credentials or confidential files.
+      Report security vulnerabilities through the private security-reporting link.
+- type: dropdown
+  id: priority
+  attributes:
+    label: Priority
+    description: Select the impact. Maintainers may adjust the priority.
+    options:
+    - P0 - Critical
+    - P1 - High
+    - P2 - Normal
+    - P3 - Low
+    default: 2
+  validations:
+    required: true
+- type: dropdown
+  id: component
+  attributes:
+    label: Component
+    options:
+    - JSON input and validation
+    - Python interface
+    - Command-line tools
+    - HTML rendering
+    - PDF rendering
+    - Page layout and branding
+    - Images and plots
+    - English and Swedish labels
+    - Packaging and installation
+    - CI and development tools
+    - Documentation
+    - Not sure
+    multiple: true
+  validations:
+    required: true
+- type: dropdown
+  id: report-template
+  attributes:
+    label: Report template
+    options:
+    - Generic
+    - Coyote3
+    - Genexus
+    - CLL Genie
+    - PGx
+    - Not template-specific
+    multiple: true
+  validations:
+    required: true
+- type: textarea
+  id: problem
+  attributes:
+    label: Problem to solve
+  validations:
+    required: true
+- type: textarea
+  id: proposal
+  attributes:
+    label: Proposed behavior
+  validations:
+    required: true
+- type: textarea
+  id: alternatives
+  attributes:
+    label: Alternatives considered
+  validations:
+    required: false
+- type: dropdown
+  id: compatibility
+  attributes:
+    label: Breaking change
+    description: Would this change existing input or behavior?
+    options:
+    - 'No'
+    - 'Yes'
+    - Not sure
+    default: 0
+  validations:
+    required: true
+- type: checkboxes
+  id: checks
+  attributes:
+    label: Before submitting
+    options:
+    - label: I searched the existing issues.
+      required: true
+    - label: My examples contain no patient information, credentials or confidential data.
+      required: true
+  validations:
+    required: true

smd_reports-0.1.0/.github/ISSUE_TEMPLATE/03-documentation.yml

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+name: Documentation
+description: Report unclear, incorrect or missing documentation.
+labels:
+- documentation
+- 'status: triage'
+body:
+- type: markdown
+  attributes:
+    value: Use example data only. Do not include patient information, credentials or confidential files.
+      Report security vulnerabilities through the private security-reporting link.
+- type: dropdown
+  id: priority
+  attributes:
+    label: Priority
+    description: Select the impact. Maintainers may adjust the priority.
+    options:
+    - P0 - Critical
+    - P1 - High
+    - P2 - Normal
+    - P3 - Low
+    default: 2
+  validations:
+    required: true
+- type: dropdown
+  id: component
+  attributes:
+    label: Component
+    options:
+    - JSON input and validation
+    - Python interface
+    - Command-line tools
+    - HTML rendering
+    - PDF rendering
+    - Page layout and branding
+    - Images and plots
+    - English and Swedish labels
+    - Packaging and installation
+    - CI and development tools
+    - Documentation
+    - Not sure
+    multiple: true
+  validations:
+    required: true
+- type: dropdown
+  id: report-template
+  attributes:
+    label: Report template
+    options:
+    - Generic
+    - Coyote3
+    - Genexus
+    - CLL Genie
+    - PGx
+    - Not template-specific
+    multiple: true
+  validations:
+    required: true
+- type: input
+  id: page
+  attributes:
+    label: Page or section
+    description: Paste the documentation URL or file path.
+  validations:
+    required: true
+- type: textarea
+  id: problem
+  attributes:
+    label: What needs to change?
+  validations:
+    required: true
+- type: textarea
+  id: proposal
+  attributes:
+    label: Suggested correction
+  validations:
+    required: false
+- type: checkboxes
+  id: checks
+  attributes:
+    label: Before submitting
+    options:
+    - label: I searched the existing issues.
+      required: true
+    - label: My examples contain no patient information, credentials or confidential data.
+      required: true
+  validations:
+    required: true

smd_reports-0.1.0/.github/ISSUE_TEMPLATE/04-question.yml

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+name: Usage question
+description: Ask about installation, input data or report rendering.
+labels:
+- question
+- 'status: triage'
+body:
+- type: markdown
+  attributes:
+    value: Use example data only. Do not include patient information, credentials or confidential files.
+      Report security vulnerabilities through the private security-reporting link.
+- type: dropdown
+  id: priority
+  attributes:
+    label: Priority
+    description: Select the impact. Maintainers may adjust the priority.
+    options:
+    - P0 - Critical
+    - P1 - High
+    - P2 - Normal
+    - P3 - Low
+    default: 2
+  validations:
+    required: true
+- type: dropdown
+  id: component
+  attributes:
+    label: Component
+    options:
+    - JSON input and validation
+    - Python interface
+    - Command-line tools
+    - HTML rendering
+    - PDF rendering
+    - Page layout and branding
+    - Images and plots
+    - English and Swedish labels
+    - Packaging and installation
+    - CI and development tools
+    - Documentation
+    - Not sure
+    multiple: true
+  validations:
+    required: true
+- type: dropdown
+  id: report-template
+  attributes:
+    label: Report template
+    options:
+    - Generic
+    - Coyote3
+    - Genexus
+    - CLL Genie
+    - PGx
+    - Not template-specific
+    multiple: true
+  validations:
+    required: true
+- type: textarea
+  id: question
+  attributes:
+    label: Question
+  validations:
+    required: true
+- type: textarea
+  id: attempts
+  attributes:
+    label: What have you tried?
+  validations:
+    required: true
+- type: input
+  id: version
+  attributes:
+    label: Package version
+  validations:
+    required: true
+- type: checkboxes
+  id: checks
+  attributes:
+    label: Before submitting
+    options:
+    - label: I searched the existing issues.
+      required: true
+    - label: My examples contain no patient information, credentials or confidential data.
+      required: true
+  validations:
+    required: true

smd_reports-0.1.0/.github/ISSUE_TEMPLATE/05-maintenance.yml

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+name: Maintenance task
+description: Track refactoring, dependencies, tests or development tooling.
+labels:
+- maintenance
+- 'status: triage'
+body:
+- type: markdown
+  attributes:
+    value: Use example data only. Do not include patient information, credentials or confidential files.
+      Report security vulnerabilities through the private security-reporting link.
+- type: dropdown
+  id: priority
+  attributes:
+    label: Priority
+    description: Select the impact. Maintainers may adjust the priority.
+    options:
+    - P0 - Critical
+    - P1 - High
+    - P2 - Normal
+    - P3 - Low
+    default: 2
+  validations:
+    required: true
+- type: dropdown
+  id: component
+  attributes:
+    label: Component
+    options:
+    - JSON input and validation
+    - Python interface
+    - Command-line tools
+    - HTML rendering
+    - PDF rendering
+    - Page layout and branding
+    - Images and plots
+    - English and Swedish labels
+    - Packaging and installation
+    - CI and development tools
+    - Documentation
+    - Not sure
+    multiple: true
+  validations:
+    required: true
+- type: dropdown
+  id: report-template
+  attributes:
+    label: Report template
+    options:
+    - Generic
+    - Coyote3
+    - Genexus
+    - CLL Genie
+    - PGx
+    - Not template-specific
+    multiple: true
+  validations:
+    required: true
+- type: textarea
+  id: work
+  attributes:
+    label: Work to be done
+  validations:
+    required: true
+- type: textarea
+  id: acceptance
+  attributes:
+    label: Acceptance criteria
+    description: Describe the results needed to close this issue.
+  validations:
+    required: true
+- type: textarea
+  id: dependencies
+  attributes:
+    label: Dependencies or related issues
+  validations:
+    required: false
+- type: checkboxes
+  id: checks
+  attributes:
+    label: Before submitting
+    options:
+    - label: I searched the existing issues.
+      required: true
+    - label: My examples contain no patient information, credentials or confidential data.
+      required: true
+  validations:
+    required: true

smd_reports-0.1.0/.github/ISSUE_TEMPLATE/config.yml

@@ -0,0 +1,5 @@
+blank_issues_enabled: false
+contact_links:
+- name: Report a security vulnerability
+  url: https://github.com/SMD-Bioinformatics-Lund/smd-reports/security/advisories/new
+  about: Report vulnerabilities privately. Do not open a public issue.

smd_reports-0.1.0/.github/labels.json

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+[
+  {
+    "name": "bug",
+    "color": "d73a4a",
+    "description": "Incorrect behavior or a regression"
+  },
+  {
+    "name": "enhancement",
+    "color": "a2eeef",
+    "description": "New functionality or an improvement"
+  },
+  {
+    "name": "documentation",
+    "color": "0075ca",
+    "description": "Documentation corrections or additions"
+  },
+  {
+    "name": "question",
+    "color": "d876e3",
+    "description": "Help using or configuring the package"
+  },
+  {
+    "name": "maintenance",
+    "color": "5319e7",
+    "description": "Refactoring, dependency updates or development tooling"
+  },
+  {
+    "name": "priority: critical",
+    "color": "b60205",
+    "description": "P0: immediate attention; report content is incorrect or release use is blocked"
+  },
+  {
+    "name": "priority: high",
+    "color": "d93f0b",
+    "description": "P1: major functionality is unavailable or significantly impaired"
+  },
+  {
+    "name": "priority: normal",
+    "color": "fbca04",
+    "description": "P2: standard bug fixes and planned improvements"
+  },
+  {
+    "name": "priority: low",
+    "color": "c2e0c6",
+    "description": "P3: minor improvements with a workaround"
+  },
+  {
+    "name": "status: triage",
+    "color": "ededed",
+    "description": "Needs review, reproduction or clarification"
+  },
+  {
+    "name": "status: ready",
+    "color": "bfdadc",
+    "description": "Ready to be assigned and scheduled"
+  },
+  {
+    "name": "status: in progress",
+    "color": "1d76db",
+    "description": "Implementation is underway"
+  },
+  {
+    "name": "status: blocked",
+    "color": "b60205",
+    "description": "Waiting on a dependency or decision"
+  },
+  {
+    "name": "status: in review",
+    "color": "5319e7",
+    "description": "Implementation is awaiting review"
+  },
+  {
+    "name": "breaking change",
+    "color": "d93f0b",
+    "description": "Changes existing public behavior or accepted input"
+  },
+  {
+    "name": "area: schema",
+    "color": "c5def5",
+    "description": "JSON input and validation"
+  },
+  {
+    "name": "area: python",
+    "color": "c5def5",
+    "description": "Python interface"
+  },
+  {
+    "name": "area: cli",
+    "color": "c5def5",
+    "description": "Command-line tools"
+  },
+  {
+    "name": "area: html",
+    "color": "c5def5",
+    "description": "HTML rendering"
+  },
+  {
+    "name": "area: pdf",
+    "color": "c5def5",
+    "description": "PDF rendering"
+  },
+  {
+    "name": "area: layout",
+    "color": "c5def5",
+    "description": "Page layout and branding"
+  },
+  {
+    "name": "area: images",
+    "color": "c5def5",
+    "description": "Images and plots"
+  },
+  {
+    "name": "area: localization",
+    "color": "c5def5",
+    "description": "English and Swedish labels"
+  },
+  {
+    "name": "area: packaging",
+    "color": "c5def5",
+    "description": "Packaging and installation"
+  },
+  {
+    "name": "area: ci",
+    "color": "c5def5",
+    "description": "CI and development tools"
+  },
+  {
+    "name": "area: docs",
+    "color": "c5def5",
+    "description": "Documentation"
+  },
+  {
+    "name": "template: generic",
+    "color": "d4c5f9",
+    "description": "Generic report template"
+  },
+  {
+    "name": "template: coyote3",
+    "color": "d4c5f9",
+    "description": "Coyote3 report template"
+  },
+  {
+    "name": "template: genexus",
+    "color": "d4c5f9",
+    "description": "Genexus report template"
+  },
+  {
+    "name": "template: cll-genie",
+    "color": "d4c5f9",
+    "description": "CLL Genie report template"
+  },
+  {
+    "name": "template: pgx",
+    "color": "d4c5f9",
+    "description": "PGx report template"
+  }
+]