small-fish-gui 2.1.1__tar.gz → 2.1.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (63) hide show
  1. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/PKG-INFO +6 -2
  2. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/README.md +5 -1
  3. small_fish_gui-2.1.3/error_log.txt +931 -0
  4. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/pyproject.toml +1 -1
  5. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/__init__.py +1 -1
  6. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/gui/layout.py +3 -1
  7. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/gui/napari_visualiser.py +6 -3
  8. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/interface/settings.json +3 -3
  9. small_fish_gui-2.1.3/src/small_fish_gui/interface/testing.ipynb +4354 -0
  10. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/pipeline/_colocalisation.py +13 -3
  11. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/pipeline/actions.py +54 -40
  12. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/pipeline/spots.py +17 -19
  13. small_fish_gui-2.1.1/error_log.txt +0 -374
  14. small_fish_gui-2.1.1/small_fish_gui.code-workspace +0 -7
  15. small_fish_gui-2.1.1/src/small_fish_gui/batch/values.txt +0 -65
  16. small_fish_gui-2.1.1/src/small_fish_gui/pipeline/testing.ipynb +0 -3636
  17. small_fish_gui-2.1.1/src/small_fish_gui/small_fish_gui.code-workspace +0 -7
  18. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/LICENSE +0 -0
  19. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/illustrations/DetectionVitrine_filtre.png +0 -0
  20. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/illustrations/DetectionVitrine_signal.png +0 -0
  21. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/illustrations/FocciVitrine.png +0 -0
  22. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/illustrations/FocciVitrine_no_spots.png +0 -0
  23. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/illustrations/Segmentation2D.png +0 -0
  24. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/illustrations/Segmentation2D_with_labels.png +0 -0
  25. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/logo.png +0 -0
  26. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/requirements.txt +0 -0
  27. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/screenshot/general_help_screenshot.png +0 -0
  28. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/screenshot/mapping_help_screenshot.png +0 -0
  29. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/screenshot/segmentation_help_screenshot.png +0 -0
  30. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/__main__.py +0 -0
  31. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/batch/__init__.py +0 -0
  32. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/batch/input.py +0 -0
  33. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/batch/integrity.py +0 -0
  34. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/batch/output.py +0 -0
  35. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/batch/pipeline.py +0 -0
  36. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/batch/prompt.py +0 -0
  37. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/batch/test.py +0 -0
  38. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/batch/update.py +0 -0
  39. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/batch/utils.py +0 -0
  40. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/gui/__init__.py +0 -0
  41. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/gui/_napari_widgets.py +0 -0
  42. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/gui/animation.py +0 -0
  43. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/gui/prompts.py +0 -0
  44. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/gui/testing.ipynb +0 -0
  45. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/gui/theme.py +0 -0
  46. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/gui/tooltips.py +0 -0
  47. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/hints.py +0 -0
  48. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/interface/__init__.py +0 -0
  49. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/interface/default_settings.py +0 -0
  50. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/interface/image.py +0 -0
  51. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/interface/inoutput.py +0 -0
  52. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/interface/testing.py +0 -0
  53. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/interface/user_settings.py +0 -0
  54. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/main_menu.py +0 -0
  55. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/pipeline/__init__.py +0 -0
  56. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/pipeline/_bigfish_wrapers.py +0 -0
  57. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/pipeline/_custom_errors.py +0 -0
  58. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/pipeline/_preprocess.py +0 -0
  59. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/pipeline/detection.py +0 -0
  60. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/pipeline/segmentation.py +0 -0
  61. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/pipeline/test.py +0 -0
  62. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/pipeline/utils.py +0 -0
  63. {small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/src/small_fish_gui/utils.py +0 -0
{small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: small_fish_gui
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- Version: 2.1.1
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+ Version: 2.1.3
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  Summary: Small Fish is a python application for the analysis of smFish images. It provides a ready to use graphical interface to combine famous python packages for cell analysis without any need for coding.
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  Project-URL: Homepage, https://github.com/SmallFishGUI/small_fish_gui
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  Project-URL: Wiki, https://github.com/SmallFishGUI/small_fish_gui/wiki
@@ -131,4 +131,8 @@ You are all set! Try it yourself or check the [get started](https://github.com/2
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  ## Developement
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  Bugs to fix :
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- * Use of load button during co-localization quantification yields wrongs results
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+ * Use of load button during co-localization quantification yields diffrent results than when testing from memory :
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+ --> Shown results are correct and consistent with results from memory
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+ --> But background (i.e cell_id = 0) is treated as a cell instead of being filtered
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+ --> But cells on edges are NOT removed from quantification (they are if test is performed from memory)
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+ --> But Cluster related metrics are not computed when test is performed from save
{small_fish_gui-2.1.1 → small_fish_gui-2.1.3}/README.md RENAMED
@@ -96,4 +96,8 @@ You are all set! Try it yourself or check the [get started](https://github.com/2
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  ## Developement
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  Bugs to fix :
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- * Use of load button during co-localization quantification yields wrongs results
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+ * Use of load button during co-localization quantification yields diffrent results than when testing from memory :
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+ --> Shown results are correct and consistent with results from memory
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+ --> But background (i.e cell_id = 0) is treated as a cell instead of being filtered
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+ --> But cells on edges are NOT removed from quantification (they are if test is performed from memory)
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+ --> But Cluster related metrics are not computed when test is performed from save