small-fish-gui 1.7.0__tar.gz → 1.7.1__tar.gz

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Files changed (53) hide show
  1. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/PKG-INFO +1 -1
  2. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/pyproject.toml +1 -1
  3. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/__init__.py +1 -1
  4. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/interface/output.py +2 -2
  5. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/LICENSE +0 -0
  6. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/README.md +0 -0
  7. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/.github/workflows/python-publish.yml +0 -0
  8. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/.readthedocs.yaml +0 -0
  9. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/LICENSE +0 -0
  10. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/README.md +0 -0
  11. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/Segmentation example.jpg +0 -0
  12. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/__main__.py +0 -0
  13. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/batch/__init__.py +0 -0
  14. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/batch/input.py +0 -0
  15. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/batch/integrity.py +0 -0
  16. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/batch/output.py +0 -0
  17. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/batch/pipeline.py +0 -0
  18. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/batch/prompt.py +0 -0
  19. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/batch/test.py +0 -0
  20. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/batch/update.py +0 -0
  21. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/batch/utils.py +0 -0
  22. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/batch/values.py +0 -0
  23. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/batch/values.txt +0 -0
  24. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/docs/conf.py +0 -0
  25. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/gui/__init__.py +0 -0
  26. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/gui/_napari_widgets.py +0 -0
  27. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/gui/animation.py +0 -0
  28. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/gui/general_help_screenshot.png +0 -0
  29. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/gui/help_module.py +0 -0
  30. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/gui/layout.py +0 -0
  31. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/gui/mapping_help_screenshot.png +0 -0
  32. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/gui/napari.py +0 -0
  33. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/gui/prompts.py +0 -0
  34. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/gui/segmentation_help_screenshot.png +0 -0
  35. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/interface/__init__.py +0 -0
  36. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/interface/image.py +0 -0
  37. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/interface/parameters.py +0 -0
  38. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/interface/testing.py +0 -0
  39. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/napari_detection_example.png +0 -0
  40. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/pipeline/__init__.py +0 -0
  41. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/pipeline/_colocalisation.py +0 -0
  42. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/pipeline/_custom_errors.py +0 -0
  43. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/pipeline/_preprocess.py +0 -0
  44. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/pipeline/_segmentation.py +0 -0
  45. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/pipeline/_signaltonoise.py +0 -0
  46. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/pipeline/actions.py +0 -0
  47. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/pipeline/detection.py +0 -0
  48. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/pipeline/main.py +0 -0
  49. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/pipeline/spots.py +0 -0
  50. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/pipeline/test.py +0 -0
  51. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/pipeline/utils.py +0 -0
  52. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/requirements.txt +0 -0
  53. {small_fish_gui-1.7.0 → small_fish_gui-1.7.1}/src/small_fish_gui/utils.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: small_fish_gui
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- Version: 1.7.0
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+ Version: 1.7.1
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  Summary: Small Fish is a python application for the analysis of smFish images. It provides a ready to use graphical interface to combine famous python packages for cell analysis without any need for coding.
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  Project-URL: Homepage, https://github.com/2Echoes/small_fish
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  Project-URL: Issues, https://github.com/2Echoes/small_fish/issues
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
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  [project]
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  name = "small_fish_gui"
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- version = "1.7.0"
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+ version = "1.7.1"
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  authors = [
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  { name="Slimani Floric", email="floric.slimani@live.com" },
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  ]
@@ -38,4 +38,4 @@ ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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  SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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  """
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- __version__ = "1.7.0"
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+ __version__ = "1.7.1"
@@ -33,13 +33,13 @@ def write_results(dataframe: pd.DataFrame, path:str, filename:str, do_excel= Tru
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  i= 1
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  if not overwrite :
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- while new_filename + '.xlsx' in os.listdir(path) or new_filename + '.feather' in os.listdir(path) or new_filename + '.csv' in os.listdir(path) :
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+ while new_filename + '.xlsx' in os.listdir(path) or new_filename + '.parquet' in os.listdir(path) or new_filename + '.csv' in os.listdir(path) :
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  new_filename = filename + '_{0}'.format(i)
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  i+=1
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  COLUMNS_TO_DROP = ['image', 'spots', 'clusters', 'rna_coords', 'cluster_coords']
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  for col in COLUMNS_TO_DROP :
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- dataframe = dataframe.drop(columns=col)
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+ if col in dataframe.columns : dataframe = dataframe.drop(columns=col)
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  if reset_index : dataframe = dataframe.reset_index(drop=True)
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