small-fish-gui 1.3.3__tar.gz → 1.3.4__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (38) hide show
  1. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/PKG-INFO +1 -1
  2. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/pyproject.toml +1 -1
  3. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/__init__.py +1 -1
  4. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/pipeline/_napari_wrapper.py +3 -2
  5. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/LICENSE +0 -0
  6. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/README.md +0 -0
  7. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/.github/workflows/python-publish.yml +0 -0
  8. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/LICENSE +0 -0
  9. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/README.md +0 -0
  10. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/Segmentation example.jpg +0 -0
  11. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/__main__.py +0 -0
  12. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/gui/__init__.py +0 -0
  13. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/gui/animation.py +0 -0
  14. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/gui/general_help_screenshot.png +0 -0
  15. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/gui/help_module.py +0 -0
  16. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/gui/layout.py +0 -0
  17. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/gui/mapping_help_screenshot.png +0 -0
  18. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/gui/prompts.py +0 -0
  19. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/gui/segmentation_help_screenshot.png +0 -0
  20. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/gui/test.py +0 -0
  21. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/interface/__init__.py +0 -0
  22. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/interface/image.py +0 -0
  23. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/interface/output.py +0 -0
  24. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/interface/parameters.py +0 -0
  25. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/interface/testing.py +0 -0
  26. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/napari_detection_example.png +0 -0
  27. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/pipeline/_colocalisation.py +0 -0
  28. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/pipeline/_custom_errors.py +0 -0
  29. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/pipeline/_preprocess.py +0 -0
  30. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/pipeline/_segmentation.py +0 -0
  31. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/pipeline/_signaltonoise.py +0 -0
  32. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/pipeline/actions.py +0 -0
  33. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/pipeline/detection.py +0 -0
  34. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/pipeline/main.py +0 -0
  35. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/pipeline/spots.py +0 -0
  36. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/pipeline/test.py +0 -0
  37. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/requirements.txt +0 -0
  38. {small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/utils.py +0 -0
{small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: small_fish_gui
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- Version: 1.3.3
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+ Version: 1.3.4
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  Summary: Small Fish is a python application for the analysis of smFish images. It provides a ready to use graphical interface to combine famous python packages for cell analysis without any need for coding.
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  Project-URL: Homepage, https://github.com/2Echoes/small_fish
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  Project-URL: Issues, https://github.com/2Echoes/small_fish/issues
{small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
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  [project]
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  name = "small_fish_gui"
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- version = "1.3.3"
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+ version = "1.3.4"
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  authors = [
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  { name="Slimani Floric", email="floric.slimani@live.com" },
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  ]
{small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/__init__.py RENAMED
@@ -38,4 +38,4 @@ ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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  SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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  """
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- __version__ = "1.3.3"
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+ __version__ = "1.3.4"
{small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/src/small_fish_gui/pipeline/_napari_wrapper.py RENAMED
@@ -199,19 +199,20 @@ def threshold_selection(
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  """
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  Viewer = napari.Viewer(title= "Small fish - Threshold selector", ndisplay=2, show=True)
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+ scale = compute_anisotropy_coef(voxel_size)
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  Viewer.add_image(
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  data= image,
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  contrast_limits= [image.min(), image.max()],
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  name= "raw signal",
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  colormap= 'green',
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- scale= voxel_size,
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+ scale= scale,
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  blending= 'additive'
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  )
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  Viewer.add_image(
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  data= filtered_image,
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  contrast_limits= [filtered_image.min(), filtered_image.max()],
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  colormap= 'gray',
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- scale=voxel_size,
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+ scale=scale,
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  blending='additive'
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  )
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{small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/LICENSE RENAMED
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{small_fish_gui-1.3.3 → small_fish_gui-1.3.4}/README.md RENAMED
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