small-fish-gui 1.3.2__tar.gz → 1.3.3__tar.gz

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Files changed (38) hide show
  1. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/PKG-INFO +1 -1
  2. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/pyproject.toml +1 -1
  3. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/__init__.py +1 -1
  4. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/pipeline/detection.py +6 -5
  5. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/LICENSE +0 -0
  6. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/README.md +0 -0
  7. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/.github/workflows/python-publish.yml +0 -0
  8. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/LICENSE +0 -0
  9. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/README.md +0 -0
  10. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/Segmentation example.jpg +0 -0
  11. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/__main__.py +0 -0
  12. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/gui/__init__.py +0 -0
  13. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/gui/animation.py +0 -0
  14. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/gui/general_help_screenshot.png +0 -0
  15. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/gui/help_module.py +0 -0
  16. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/gui/layout.py +0 -0
  17. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/gui/mapping_help_screenshot.png +0 -0
  18. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/gui/prompts.py +0 -0
  19. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/gui/segmentation_help_screenshot.png +0 -0
  20. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/gui/test.py +0 -0
  21. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/interface/__init__.py +0 -0
  22. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/interface/image.py +0 -0
  23. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/interface/output.py +0 -0
  24. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/interface/parameters.py +0 -0
  25. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/interface/testing.py +0 -0
  26. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/napari_detection_example.png +0 -0
  27. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/pipeline/_colocalisation.py +0 -0
  28. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/pipeline/_custom_errors.py +0 -0
  29. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/pipeline/_napari_wrapper.py +0 -0
  30. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/pipeline/_preprocess.py +0 -0
  31. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/pipeline/_segmentation.py +0 -0
  32. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/pipeline/_signaltonoise.py +0 -0
  33. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/pipeline/actions.py +0 -0
  34. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/pipeline/main.py +0 -0
  35. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/pipeline/spots.py +0 -0
  36. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/pipeline/test.py +0 -0
  37. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/requirements.txt +0 -0
  38. {small_fish_gui-1.3.2 → small_fish_gui-1.3.3}/src/small_fish_gui/utils.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: small_fish_gui
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- Version: 1.3.2
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+ Version: 1.3.3
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  Summary: Small Fish is a python application for the analysis of smFish images. It provides a ready to use graphical interface to combine famous python packages for cell analysis without any need for coding.
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  Project-URL: Homepage, https://github.com/2Echoes/small_fish
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  Project-URL: Issues, https://github.com/2Echoes/small_fish/issues
@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
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  [project]
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  name = "small_fish_gui"
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- version = "1.3.2"
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+ version = "1.3.3"
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  authors = [
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  { name="Slimani Floric", email="floric.slimani@live.com" },
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  ]
@@ -38,4 +38,4 @@ ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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  SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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  """
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- __version__ = "1.3.2"
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+ __version__ = "1.3.3"
@@ -327,8 +327,8 @@ def _launch_detection(image, image_input_values: dict) :
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  logfiltered_image=filtered_image,
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  local_maxima=local_maxima,
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  default=threshold,
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- min=filtered_image[local_maxima].min(),
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- max=filtered_image[local_maxima].max(),
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+ min_value=filtered_image[local_maxima].min(),
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+ max_value=filtered_image[local_maxima].max(),
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  voxel_size=voxel_size
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  )
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@@ -752,11 +752,12 @@ def _create_threshold_slider(
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  ) :
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  if isinstance(default, float) : default = round(default)
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- min_value = max(min_value,25) #Security to avoid user put too low threshold and crashes Napari if out of memory.
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+ min_value = max(min_value,15) #Security to avoid user put too low threshold and crashes Napari if out of memory.
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  @magicgui(
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- threshold={'widget_type' : 'Slider', 'value' : default, 'min' : min_value, 'max' : max_value},
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- auto_call=True
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+ threshold={'widget_type' : 'Slider', 'value' : default, 'min' : min_value, 'max' : max_value, 'tracking' : True,},
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+ auto_call=False,
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+ call_button= "Apply"
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  )
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  def threshold_slider(threshold: int) -> LayerDataTuple:
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  spots = detection.spots_thresholding(
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